Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021128 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 4.0e-137 491.5 264 100.0
Actinidia17789 Actinidia chinensis HOM05D005242 ORTHO05D006778 2.6e-51 206.5 314 43.6
DCAR_001139 Daucus carota HOM05D005242 ORTHO05D006778 3.2e-49 199.5 278 43.2
CSS0002508 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 9.2e-49 198.0 425 36.7
Dinv25870 Davidia involucrata HOM05D005242 ORTHO05D006778 2.1e-48 196.8 363 39.4
CSS0020035 Camellia sinensis var. sinensis HOM05D005242 ORTHO05D006778 3.5e-48 196.1 425 37.6
Oeu011949.1 Olea europaea HOM05D005242 ORTHO05D006778 3.6e-45 186.0 294 39.1
Cc10_g14420 Coffea canephora HOM05D005242 ORTHO05D006778 4.0e-44 182.6 299 38.5
PGSC0003DMG400024099 Solanum tuberosum HOM05D005242 ORTHO05D006778 6.8e-44 181.8 299 37.8
SGA_v2.0_scaffold19G08682 Striga asiatica HOM05D001302 ORTHO05D001107 2.6e-43 179.9 279 39.8
Peaxi162Scf00599g00049 Petunia axillaris HOM05D005242 ORTHO05D006778 4.4e-43 179.1 321 38.3
vmacro01456 Vaccinium macrocarpon HOM05D005242 ORTHO05D006778 4.4e-43 179.1 380 37.4
Haze_17757 Corylus avellana HOM05D005242 ORTHO05D006778 4.9e-42 175.6 197 52.3
Sopen04g027460 Solanum pennellii HOM05D005242 ORTHO05D006778 6.4e-42 175.3 304 39.8
CAN.G268.26 Capsicum annuum HOM05D005242 ORTHO05D006778 5.4e-41 172.2 313 36.4
Nitab4.5_0010749g0010 Nicotiana tabacum HOM05D005242 ORTHO05D006778 5.4e-41 172.2 327 35.5
QL02p039039 Quercus lobata HOM05D005242 ORTHO05D006778 9.3e-41 171.4 181 51.9
Cfa018319 Carpinus fangiana HOM05D005242 ORTHO05D006778 3.5e-40 169.5 195 52.3
Actinidia29532 Actinidia chinensis HOM05D005242 ORTHO05D006778 3.0e-39 166.4 207 48.8
DCAR_014441 Daucus carota HOM05D005242 ORTHO05D006778 4.3e-38 162.5 335 34.6
MD10G1026100 Malus domestica HOM05D005242 ORTHO05D006778 5.6e-38 162.2 148 56.1
Nitab4.5_0001062g0060 Nicotiana tabacum HOM05D005242 ORTHO05D006778 5.6e-38 162.2 335 33.1
Solyc04g071490.3 Solanum lycopersicum HOM05D005242 ORTHO05D006778 5.6e-38 162.2 332 35.5
Potri.002G067700 Populus trichocarpa HOM05D005242 ORTHO05D006778 7.3e-38 161.8 191 47.1
Peaxi162Scf01294g00121 Petunia axillaris HOM05D005242 ORTHO05D006778 4.8e-37 159.1 313 36.7
Potri.005G192700 Populus trichocarpa HOM05D005242 ORTHO05D006778 8.1e-37 158.3 190 47.4
Eucgr.F02701 Eucalyptus grandis HOM05D005242 ORTHO05D006778 1.8e-36 157.1 282 39.7
TWI60G0101 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 1.8e-36 157.1 263 38.8
Nn5g28757 Nelumbo nucifera HOM05D005242 ORTHO05D006778 3.1e-36 156.4 207 44.0
SalBow6G1825 Salvia bowleyana HOM05D005242 ORTHO05D006778 6.9e-36 155.2 202 46.0
Lalb_Chr21g0305491 Lupinus albus HOM05D005242 ORTHO05D006778 9.0e-36 154.8 262 40.5
Aqoxy5G02077 Aquilegia oxysepala HOM05D005242 ORTHO05D006778 1.2e-35 154.5 188 45.7
CANSAT25G1562 Cannabis sativa HOM05D005242 ORTHO05D006778 1.2e-35 154.5 319 37.0
arahy.Tifrunner.gnm1.ann1.BM3N3L Arachis hypogaea HOM05D005242 ORTHO05D006778 2.0e-35 153.7 256 41.0
Lj2g0024086 Lotus japonicus HOM05D005242 ORTHO05D006778 7.6e-35 151.8 145 53.8
Lj5g0003985 Lotus japonicus HOM05D005242 ORTHO05D006778 7.6e-35 151.8 262 37.8
MD05G1026800 Malus domestica HOM05D005242 ORTHO05D006778 7.6e-35 151.8 215 42.8
arahy.Tifrunner.gnm1.ann1.661UAU Arachis hypogaea HOM05D005242 ORTHO05D006778 9.9e-35 151.4 191 44.5
PGR042G2442 Punica granatum HOM05D005242 ORTHO05D006778 1.3e-34 151.0 306 38.2
arahy.Tifrunner.gnm1.ann1.3DXP20 Arachis hypogaea HOM05D005242 ORTHO05D006778 1.7e-34 150.6 211 44.1
CAN.G18.12 Capsicum annuum HOM05D005242 ORTHO05D006778 1.7e-34 150.6 272 37.9
Lsat_1_v5_gn_6_100581 Lactuca sativa HOM05D005242 ORTHO05D006778 1.7e-34 150.6 255 39.6
CiPaw.16G012200 Carya illinoinensis HOM05D005242 ORTHO05D006778 2.9e-34 149.8 207 43.0
Sabra05G0147300 Salix brachista HOM05D005242 ORTHO05D006778 4.9e-34 149.1 188 46.8
PSO447G0326 Papaver somniferum HOM05D005242 ORTHO05D006778 1.1e-33 147.9 143 52.4
CiPaw.15G015900 Carya illinoinensis HOM05D005242 ORTHO05D006778 3.2e-33 146.4 195 43.6
Medtr1g098690 Medicago truncatula HOM05D005242 ORTHO05D006778 3.2e-33 146.4 259 39.0
PSO210G0022 Papaver somniferum HOM05D005242 ORTHO05D006778 3.2e-33 146.4 189 45.0
Glyma.16G166700 Glycine max HOM05D005242 ORTHO05D006778 4.2e-33 146.0 143 53.1
TPR.G31185 Trifolium pratense HOM05D004559 ORTHO05D005283 5.4e-33 145.6 147 50.3
VMungo0464G2160 Vigna mungo HOM05D005242 ORTHO05D006778 7.1e-33 145.2 145 51.0
COL.COLO4_08566 Corchorus olitorius HOM05D005242 ORTHO05D006778 1.6e-32 144.1 144 52.1
Lalb_Chr19g0130231 Lupinus albus HOM05D005242 ORTHO05D006778 1.6e-32 144.1 142 50.7
Psat6g192600 Pisum sativum HOM05D005242 ORTHO05D006778 1.6e-32 144.1 257 39.3
Rhsim11G0083400 Rhododendron simsii HOM05D005242 ORTHO05D006778 1.6e-32 144.1 263 42.2
GSVIVG01034538001 Vitis vinifera HOM05D005242 ORTHO05D006778 2.1e-32 143.7 235 38.7
arahy.Tifrunner.gnm1.ann1.H39N2I Arachis hypogaea HOM05D005242 ORTHO05D006778 4.6e-32 142.5 256 39.1
Duzib041G0461 Durio zibethinus HOM05D005242 ORTHO05D006778 4.6e-32 142.5 170 47.1
Psat1g101840 Pisum sativum HOM05D005242 ORTHO05D006778 4.6e-32 142.5 143 50.3
Sc26g0002570 Simmondsia chinensis HOM05D005242 ORTHO05D006778 1.0e-31 141.4 277 34.3
Prupe.8G031300 Prunus persica HOM05D005242 ORTHO05D006778 1.3e-31 141.0 230 37.8
Glyma.02G081300 Glycine max HOM05D005242 ORTHO05D006778 3.0e-31 139.8 183 44.8
Manes.02G179900 Manihot esculenta HOM05D005242 ORTHO05D006778 3.0e-31 139.8 191 46.1
Atru.chr13.2099 Acer truncatum HOM05D005242 ORTHO05D006778 5.1e-31 139.0 210 42.4
HanXRQChr05g0161961 Helianthus annuus HOM05D005242 ORTHO05D006778 8.7e-31 138.3 264 36.7
Medtr1246s0010 Medicago truncatula HOM05D005242 ORTHO05D006778 1.1e-30 137.9 143 47.6
FAN24G0150 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.5e-30 137.5 205 37.6
FAN20G3127 Fragaria x ananassa HOM05D005242 ORTHO05D006778 3.3e-30 136.3 240 35.0
Phvul.007G080300 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 5.6e-30 135.6 259 33.6
FAN27G0674 Fragaria x ananassa HOM05D005242 ORTHO05D006778 9.6e-30 134.8 205 37.6
FAN15G2695 Fragaria x ananassa HOM05D005242 ORTHO05D006778 1.6e-29 134.0 244 34.8
EL10Ac1g01555 Beta vulgaris HOM05D005242 ORTHO05D006778 2.8e-29 133.3 264 35.2
AUR62026703 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.6e-29 132.9 275 33.5
Glyma.10G224400 Glycine max HOM05D005242 ORTHO05D006778 6.2e-29 132.1 256 36.7
PGSC0003DMG402010796 Solanum tuberosum HOM05D005242 ORTHO05D006778 8.1e-29 131.7 269 34.9
RcHm_v2.0_Chr6g0275301 Rosa chinensis HOM05D005242 ORTHO05D006778 1.1e-28 131.3 207 38.2
Aa31LG4G6850 Aethionema arabicum HOM05D005242 ORTHO05D006778 1.8e-28 130.6 202 40.1
Ciclev10003945m.g Citrus clementina HOM05D005242 ORTHO05D006778 1.8e-28 130.6 217 41.9
Glyma.20G167400 Glycine max HOM05D005242 ORTHO05D006778 1.8e-28 130.6 259 35.5
Gohir.A05G243801 Gossypium hirsutum HOM05D005242 ORTHO05D006778 9.0e-28 128.3 143 47.6
Thecc.08G153500 Theobroma cacao HOM05D005242 ORTHO05D006778 9.0e-28 128.3 142 50.0
AUR62013591 Chenopodium quinoa HOM05D005242 ORTHO05D006778 3.4e-27 126.3 275 32.4
Sc02g0004040 Simmondsia chinensis HOM05D005242 ORTHO05D006778 4.5e-27 125.9 194 40.2
THA.LOC104813717 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 4.5e-27 125.9 150 44.7
Sopen12g029170 Solanum pennellii HOM05D005242 ORTHO05D006778 7.6e-27 125.2 256 33.6
VMungo0720G2917 Vigna mungo HOM05D005242 ORTHO05D006778 7.6e-27 125.2 140 47.1
A02p20890 Brassica napus HOM05D005242 ORTHO05D018625 2.9e-26 123.2 143 41.3
BraA02t07120Z Brassica rapa HOM05D005242 ORTHO05D018625 4.9e-26 122.5 170 37.1
Solyc12g056560.2 Solanum lycopersicum HOM05D005242 ORTHO05D006778 1.1e-25 121.3 266 32.0
BraA02t07119Z Brassica rapa HOM05D005242 ORTHO05D006778 5.5e-25 119.0 144 42.4
AT1G76780 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 9.3e-25 118.2 212 33.5
Gorai.009G254600 Gossypium raimondii HOM05D005242 ORTHO05D006778 9.3e-25 118.2 228 35.1
Carub.0002s2368 Capsella rubella HOM05D005242 ORTHO05D006778 1.6e-24 117.5 139 43.2
AT1G76770 Arabidopsis thaliana HOM05D005242 ORTHO05D006778 3.5e-24 116.3 142 43.0
A02p20880 Brassica napus HOM05D005242 ORTHO05D006778 3.5e-24 116.3 144 41.0
Hund17437 Selenicereus undatus HOM05D005242 ORTHO05D006778 6.0e-24 115.5 123 49.6
ClCG09G010170 Citrullus lanatus HOM05D005242 ORTHO05D006778 1.0e-23 114.8 188 38.8
C02p32790 Brassica napus HOM05D005242 ORTHO05D006778 1.3e-23 114.4 144 41.0
BcaC03g15701 Brassica carinata HOM05D005242 ORTHO05D006778 1.8e-23 114.0 144 41.0
CARHR070310 Cardamine hirsuta HOM05D005242 ORTHO05D006778 5.1e-23 112.5 143 39.2
Lsat_1_v5_gn_9_40940 Lactuca sativa HOM05D005242 ORTHO05D006778 8.7e-23 111.7 240 33.8
THA.LOC104812037 Tarenaya hassleriana HOM05D005242 ORTHO05D006778 8.7e-23 111.7 146 41.8
Ca_27679_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.9e-22 110.5 161 39.8
Aa31LG4G6840 Aethionema arabicum HOM05D005242 ORTHO05D006778 2.5e-22 110.2 132 43.9
A07p42410 Brassica napus HOM05D005242 ORTHO05D006778 7.4e-22 108.6 140 39.3
BolC2t09420H Brassica oleracea HOM05D005242 ORTHO05D018625 2.8e-21 106.7 152 38.8
AL2G36920 Arabidopsis lyrata HOM05D005242 ORTHO05D006778 3.7e-21 106.3 146 39.0
Cpa.g.sc21.205 Carica papaya HOM05D005242 ORTHO05D006778 3.7e-21 106.3 143 42.0
C06p50980 Brassica napus HOM05D005242 ORTHO05D006778 6.2e-21 105.5 133 40.6
BolC6t40122H Brassica oleracea HOM05D005242 ORTHO05D006778 6.2e-21 105.5 133 40.6
BraA07t31767Z Brassica rapa HOM05D005242 ORTHO05D006778 1.8e-20 104.0 141 39.0
Nitab4.5_0002487g0010 Nicotiana tabacum HOM05D001302 ORTHO05D001107 2.4e-20 103.6 248 32.3
TPR.G33911 Trifolium pratense HOM05D005786 ORTHO05D006946 5.3e-20 102.4 98 54.1
ATR0820G162 Amborella trichopoda HOM05D005242 ORTHO05D006778 1.5e-19 100.9 144 41.0
Migut.N03213 Erythranthe guttata HOM05D005242 ORTHO05D006778 1.5e-19 100.9 143 41.3
CDE08G0940 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 5.8e-19 99.0 117 46.2
GSVIVG01034537001 Vitis vinifera HOM05D005242 ORTHO05D006778 1.9e-17 94.0 168 37.5
CDE02G4447 Ceratophyllum demersum HOM05D005242 ORTHO05D006778 2.5e-17 93.6 238 33.6
FvH4_2g13660 Fragaria vesca HOM05D005242 ORTHO05D006778 4.2e-17 92.8 156 32.7
unitig_52.g17530 Utricularia gibba HOM05D005242 ORTHO05D006778 5.5e-17 92.4 237 29.1
Nitab4.5_0004505g0020 Nicotiana tabacum HOM05D005242 ORTHO05D006778 2.1e-16 90.5 238 32.8
BcaC03g15702 Brassica carinata HOM05D005242 ORTHO05D018625 1.8e-15 87.4 142 33.1
TWI60G1058 Tripterygium wilfordii HOM05D005242 ORTHO05D006778 2.5e-14 83.6 115 44.3
BcaB05g25009 Brassica carinata HOM05D005242 ORTHO05D006778 7.4e-14 82.0 145 35.2
Ca_10684_v3 Cicer arietinum L. HOM05D005242 ORTHO05D006778 1.1e-12 78.2 174 35.6
Sed0006497 Sechium edule HOM05D005242 ORTHO05D006778 2.6e-11 73.6 129 34.1
Phvul.004G094700 Phaseolus vulgaris HOM05D005242 ORTHO05D006778 5.9e-11 72.4 70 50.0
Carub.0002s2369 Capsella rubella HOM05D005242 ORTHO05D018625 8.5e-10 68.6 90 41.1
ECA232G5004 Erigeron canadensis HOM05D005242 ORTHO05D006778 5.5e-09 65.9 176 28.4
ECA246G4795 Erigeron canadensis HOM05D000028 ORTHO05D001176 9.3e-09 65.1 224 28.1
BcaC03g15700 Brassica carinata HOM05D005242 ORTHO05D006778 1.2e-08 64.7 106 34.0
Sp5g31920 Schrenkiella parvula HOM05D005242 ORTHO05D006778 1.3e-07 61.2 66 47.0
SEGI_03948 Sequoiadendron giganteum HOM05D005242 ORTHO05D000080 1.8e-07 60.8 139 30.9
HPP92_004419 Vanilla planifolia HOM05D024549 ORTHO05D006778 1.1e-06 58.2 170 29.4
Zm00001eb139380 Zea mays HOM05D005242 ORTHO05D006778 1.1e-06 58.2 107 29.0
Pp3c19_14230 Physcomitrium patens HOM05D000136 ORTHO05D000080 3.3e-06 56.6 93 34.4
Atru.chr12.278 Acer truncatum HOM05D000136 ORTHO05D000080 4.3e-06 56.2 93 36.6
Sed0005574 Sechium edule HOM05D000136 ORTHO05D000080 5.7e-06 55.8 135 32.6
SEGI_17081 Sequoiadendron giganteum HOM05D000136 ORTHO05D000080 5.7e-06 55.8 93 38.7


User provided reference genes

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