Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021115 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.5e-44 181.8 95 100.0
CSS0035617 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 2.6e-41 171.8 95 94.7
CSS0008945 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 1.7e-40 169.1 95 92.6
CSS0044029 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 3.7e-40 167.9 95 92.6
CSS0041715 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 5.3e-31 137.5 77 93.5
CSS0017526 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D111394 2.0e-22 109.0 77 81.8
CSS0038513 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 7.0e-15 84.0 52 82.7
Nitab4.5_0007473g0010 Nicotiana tabacum HOM05D007824 ORTHO05D009875 3.8e-13 78.2 53 77.4
Solyc08g006580.3 Solanum lycopersicum HOM05D007824 ORTHO05D009875 4.2e-12 74.7 52 75.0
PGSC0003DMG402026306 Solanum tuberosum HOM05D007824 ORTHO05D009875 5.5e-12 74.3 52 75.0
Oeu030057.1 Olea europaea HOM05D007824 ORTHO05D009875 3.6e-11 71.6 52 73.1
CiPaw.08G004000 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.4e-10 69.7 54 70.4
ClCG05G016050 Citrullus lanatus HOM05D007824 ORTHO05D009875 2.3e-10 68.9 52 67.3
Prupe.1G398400 Prunus persica HOM05D007824 ORTHO05D009875 3.0e-10 68.6 54 70.4
CSS0018794 Camellia sinensis var. sinensis HOM05D007824 ORTHO05D009875 4.0e-10 68.2 36 94.4
Migut.A00397 Erythranthe guttata HOM05D007824 ORTHO05D009875 6.8e-10 67.4 52 69.2
Migut.E01438 Erythranthe guttata HOM05D007824 ORTHO05D009875 8.8e-10 67.0 52 65.4
Nn5g27701 Nelumbo nucifera HOM05D007824 ORTHO05D009875 1.5e-09 66.2 52 65.4
ClCG08G013840 Citrullus lanatus HOM05D007824 ORTHO05D009875 2.6e-09 65.5 52 61.5
Ciclev10010135m.g Citrus clementina HOM05D007824 ORTHO05D009875 2.6e-09 65.5 52 69.2
RcHm_v2.0_Chr6g0299081 Rosa chinensis HOM05D007824 ORTHO05D009875 2.6e-09 65.5 54 68.5
Sc23g0006310 Simmondsia chinensis HOM05D007824 ORTHO05D009875 2.6e-09 65.5 52 69.2
Sed0001567 Sechium edule HOM05D007824 ORTHO05D009875 3.4e-09 65.1 52 63.5
Eucgr.C04026 Eucalyptus grandis HOM05D007824 ORTHO05D009875 4.4e-09 64.7 48 68.8
MELO3C016940.2 Cucumis melo HOM05D007824 ORTHO05D009875 9.8e-09 63.5 71 53.5
CiPaw.07G233700 Carya illinoinensis HOM05D007824 ORTHO05D009875 1.3e-08 63.2 42 78.6
Phvul.009G085600 Phaseolus vulgaris HOM05D007824 ORTHO05D009875 2.8e-08 62.0 50 62.0
Manes.03G006300 Manihot esculenta HOM05D007824 ORTHO05D009875 3.7e-08 61.6 48 64.6
Sed0025799 Sechium edule HOM05D007824 ORTHO05D009875 3.7e-08 61.6 52 59.6
Sed0025864 Sechium edule HOM05D007824 ORTHO05D009875 3.7e-08 61.6 52 59.6
THA.LOC104803330 Tarenaya hassleriana HOM05D007824 ORTHO05D009875 8.3e-08 60.5 52 59.6
Aa31LG3G16350 Aethionema arabicum HOM05D007824 ORTHO05D009875 1.1e-07 60.1 68 52.9
Glyma.04G059451 Glycine max HOM05D007824 ORTHO05D009875 1.1e-07 60.1 53 62.3
MD08G1050300 Malus domestica HOM05D007824 ORTHO05D009875 1.1e-07 60.1 54 63.0
Thecc.09G011700 Theobroma cacao HOM05D007824 ORTHO05D009875 1.1e-07 60.1 43 69.8
Atru.chr7.2598 Acer truncatum HOM05D007824 ORTHO05D009875 1.8e-07 59.3 55 60.0
unitig_46.g18221 Utricularia gibba HOM05D007824 ORTHO05D009875 1.8e-07 59.3 52 53.8
Gohir.A13G178900 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.4e-07 58.9 43 67.4
Gohir.D13G187000 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.4e-07 58.9 43 67.4
Lalb_Chr08g0244541 Lupinus albus HOM05D007824 ORTHO05D009875 2.4e-07 58.9 53 62.3
Duzib168G1878 Durio zibethinus HOM05D007824 ORTHO05D009875 4.1e-07 58.2 43 65.1
Sed0013399 Sechium edule HOM05D007824 ORTHO05D009875 4.1e-07 58.2 52 55.8
Medtr3g105765 Medicago truncatula HOM05D007824 ORTHO05D009875 5.4e-07 57.8 53 58.5
Potri.018G014101 Populus trichocarpa HOM05D007824 ORTHO05D009875 5.4e-07 57.8 43 67.4
Oeu006856.1 Olea europaea HOM05D007824 ORTHO05D009875 1.2e-06 56.6 49 61.2
Glyma.06G059900 Glycine max HOM05D007824 ORTHO05D009875 2.0e-06 55.8 53 58.5
Gohir.A05G062100 Gossypium hirsutum HOM05D007824 ORTHO05D009875 2.7e-06 55.5 42 61.9
MD15G1044500 Malus domestica HOM05D007824 ORTHO05D009875 2.7e-06 55.5 49 59.2
Gohir.D05G064600 Gossypium hirsutum HOM05D007824 ORTHO05D009875 4.5e-06 54.7 43 60.5
Gorai.009G065300 Gossypium raimondii HOM05D007824 ORTHO05D009875 5.9e-06 54.3 42 61.9


User provided reference genes

Program Settings