Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021101 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 3.7e-36 154.5 83 100.0
CSS0032367 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 4.8e-28 127.5 70 95.7
Actinidia23927 Actinidia chinensis HOM05D004998 ORTHO05D006104 1.8e-19 99.0 71 73.2
Actinidia34418 Actinidia chinensis HOM05D004998 ORTHO05D006104 4.5e-18 94.4 67 74.6
CSS0033668 Camellia sinensis var. sinensis HOM05D004998 ORTHO05D006104 1.0e-17 93.2 72 73.6
Dinv17028 Davidia involucrata HOM05D004998 ORTHO05D006104 2.3e-14 82.0 70 67.1
Dinv42976 Davidia involucrata HOM05D004998 ORTHO05D006104 2.3e-14 82.0 70 67.1
Dinv43123 Davidia involucrata HOM05D004998 ORTHO05D006104 2.3e-14 82.0 70 67.1
Cfa011521 Carpinus fangiana HOM05D004998 ORTHO05D006104 4.0e-14 81.3 80 60.0
Atru.chr3.3979 Acer truncatum HOM05D004998 ORTHO05D006104 3.4e-13 78.2 73 60.3
Hma1.2p1_0615F.1_g189810 Hydrangea macrophylla HOM05D004998 ORTHO05D006104 4.4e-13 77.8 70 60.0
Ciclev10029345m.g Citrus clementina HOM05D004998 ORTHO05D006104 5.7e-13 77.4 63 66.7
GSVIVG01024930001 Vitis vinifera HOM05D004998 ORTHO05D006104 1.7e-12 75.9 63 65.1
Rhsim13G0078800 Rhododendron simsii HOM05D004998 ORTHO05D006104 2.8e-12 75.1 73 60.3
Migut.D02075 Erythranthe guttata HOM05D004998 ORTHO05D006104 8.3e-12 73.6 72 59.7
vmacro03047 Vaccinium macrocarpon HOM05D004998 ORTHO05D006104 1.1e-11 73.2 73 58.9
Cc01_g13080 Coffea canephora HOM05D004998 ORTHO05D006104 1.8e-11 72.4 63 60.3
Eucgr.B02327 Eucalyptus grandis HOM05D004998 ORTHO05D006104 1.8e-11 72.4 67 55.2
CiPaw.14G067400 Carya illinoinensis HOM05D004998 ORTHO05D006104 3.1e-11 71.6 62 62.9
Lj1A149T62 Lonicera japonica HOM05D004998 ORTHO05D006104 5.4e-11 70.9 63 65.1
MD03G1088800 Malus domestica HOM05D004998 ORTHO05D006104 7.7e-10 67.0 67 55.2
TWI79G0863 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.0e-09 66.6 63 57.1
SGA_v2.0_scaffold41G15739 Striga asiatica HOM05D004998 ORTHO05D006104 1.3e-09 66.2 61 62.3
THA.LOC104810769 Tarenaya hassleriana HOM05D004998 ORTHO05D006104 1.3e-09 66.2 62 59.7
TAR636G1117 Trochodendron aralioides HOM05D004998 ORTHO05D006104 1.3e-09 66.2 76 51.3
PGR102G0830 Punica granatum HOM05D004998 ORTHO05D006104 1.7e-09 65.9 67 53.7
TWI75G0636 Tripterygium wilfordii HOM05D004998 ORTHO05D006104 1.7e-09 65.9 66 56.1
Prupe.6G073200 Prunus persica HOM05D004998 ORTHO05D006104 2.9e-09 65.1 63 58.7
Oeu053883.1 Olea europaea HOM05D004998 ORTHO05D006104 3.8e-09 64.7 63 61.9
Duzib168G2185 Durio zibethinus HOM05D004998 ORTHO05D006104 5.0e-09 64.3 62 54.8
Nn2g11147 Nelumbo nucifera HOM05D004998 ORTHO05D006104 6.5e-09 63.9 69 50.7
Thecc.09G318900 Theobroma cacao HOM05D004998 ORTHO05D006104 6.5e-09 63.9 62 54.8
Sc12g0001370 Simmondsia chinensis HOM05D004998 ORTHO05D006104 1.1e-08 63.2 60 61.7
FvH4_3g36750 Fragaria vesca HOM05D004998 ORTHO05D006104 1.9e-08 62.4 63 58.7
QL01p031100 Quercus lobata HOM05D004998 ORTHO05D006104 1.9e-08 62.4 62 61.3
Peaxi162Scf00122g01415 Petunia axillaris HOM05D004998 ORTHO05D006104 2.5e-08 62.0 61 57.4
Phvul.L006843 Phaseolus vulgaris HOM05D004998 ORTHO05D006104 2.5e-08 62.0 64 51.6
Potri.009G033400 Populus trichocarpa HOM05D004998 ORTHO05D006104 2.5e-08 62.0 61 55.7
Hund18896 Selenicereus undatus HOM05D004998 ORTHO05D006104 2.5e-08 62.0 63 50.8
Sabra09G0023800 Salix brachista HOM05D004998 ORTHO05D006104 3.2e-08 61.6 57 57.9
Glyma.15G036800 Glycine max HOM05D004998 ORTHO05D006104 4.2e-08 61.2 57 54.4
FAN16G3214 Fragaria x ananassa HOM05D004998 ORTHO05D006104 7.2e-08 60.5 61 59.0
MD11G1097800 Malus domestica HOM05D004998 ORTHO05D006104 7.2e-08 60.5 61 57.4
Lalb_Chr03g0026531 Lupinus albus HOM05D004998 ORTHO05D006104 1.6e-07 59.3 61 54.1
Lalb_Chr01g0003571 Lupinus albus HOM05D004998 ORTHO05D006104 2.1e-07 58.9 61 50.8
FAN11G2014 Fragaria x ananassa HOM05D004998 ORTHO05D006104 2.7e-07 58.5 65 55.4
Peaxi162Scf00092g01117 Petunia axillaris HOM05D004998 ORTHO05D006104 2.7e-07 58.5 61 54.1
Duzib150G0269 Durio zibethinus HOM05D004998 ORTHO05D006104 3.6e-07 58.2 60 56.7
FAN21G1380 Fragaria x ananassa HOM05D004998 ORTHO05D006104 3.6e-07 58.2 62 56.5
Gohir.A05G094300 Gossypium hirsutum HOM05D004998 ORTHO05D006104 3.6e-07 58.2 73 47.9
RcHm_v2.0_Chr5g0065711 Rosa chinensis HOM05D004998 ORTHO05D006104 3.6e-07 58.2 63 55.6
CiPaw.13G091800 Carya illinoinensis HOM05D004998 ORTHO05D006104 8.0e-07 57.0 60 55.0
TAR633G0520 Trochodendron aralioides HOM05D004998 ORTHO05D006104 8.0e-07 57.0 70 48.6
FAN25G0408 Fragaria x ananassa HOM05D004998 ORTHO05D006104 1.0e-06 56.6 61 57.4
Nitab4.5_0000272g0050 Nicotiana tabacum HOM05D004998 ORTHO05D006104 1.8e-06 55.8 61 55.7
ClCG02G020020 Citrullus lanatus HOM05D004998 ORTHO05D006104 4.0e-06 54.7 64 51.6
Manes.01G171600 Manihot esculenta HOM05D004998 ORTHO05D006104 4.0e-06 54.7 62 54.8
Psat5g285160 Pisum sativum HOM05D004998 ORTHO05D006104 5.2e-06 54.3 56 50.0
VMungo1080G1028 Vigna mungo HOM05D004998 ORTHO05D006104 5.2e-06 54.3 55 50.9


User provided reference genes

Program Settings