Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 2.3e-114 415.6 217 100.0
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 8.9e-58 227.6 219 63.9
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.3e-56 223.8 263 52.9
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 1.7e-56 223.4 217 60.4
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 8.4e-56 221.1 219 61.6
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 5.6e-52 208.4 188 63.8
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 7.3e-52 208.0 223 55.6
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 3.6e-51 205.7 250 52.8
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 3.1e-50 202.6 162 70.4
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 5.3e-50 201.8 162 71.6
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 6.9e-50 201.4 187 63.1
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.5e-49 200.3 221 58.4
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 1.5e-49 200.3 217 57.6
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 2.0e-49 199.9 162 69.8
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 3.4e-49 199.1 162 69.8
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 4.5e-49 198.7 194 60.8
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 7.6e-49 198.0 187 62.6
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 9.9e-49 197.6 187 58.3
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 9.9e-49 197.6 227 55.1
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 2.2e-48 196.4 160 69.4
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 3.8e-48 195.7 222 54.1
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 6.4e-48 194.9 223 57.0
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 1.1e-47 194.1 158 67.7
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 1.1e-47 194.1 217 53.9
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.4e-47 193.7 165 69.1
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.9e-47 193.4 169 63.9
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 2.4e-47 193.0 187 61.5
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 2.4e-47 193.0 162 69.1
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 5.4e-47 191.8 185 60.5
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 7.1e-47 191.4 198 61.1
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.2e-46 190.7 160 69.4
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.0e-45 187.6 188 60.6
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 1.8e-45 186.8 182 57.7
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 3.0e-45 186.0 221 50.7
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 3.0e-45 186.0 212 55.2
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 5.1e-45 185.3 177 62.7
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 1.1e-44 184.1 156 65.4
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 1.5e-44 183.7 222 54.1
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 1.9e-44 183.3 181 60.8
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 2.8e-43 179.5 220 53.2
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 2.8e-43 179.5 188 58.5
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.2e-43 178.3 219 51.1
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 6.2e-43 178.3 191 57.6
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 8.1e-43 177.9 217 53.0
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 8.1e-43 177.9 187 56.7
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 1.1e-42 177.6 172 60.5
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.4e-42 177.2 156 62.8
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.8e-42 176.8 219 51.1
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 2.4e-42 176.4 176 57.4
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 3.1e-42 176.0 220 51.4
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 3.1e-42 176.0 187 54.5
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 4.0e-42 175.6 218 51.4
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 4.0e-42 175.6 155 62.6
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 4.0e-42 175.6 187 54.5
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.3e-42 175.3 220 51.4
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 6.9e-42 174.9 155 61.9
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 9.0e-42 174.5 172 55.2
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 9.0e-42 174.5 220 50.9
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 1.5e-41 173.7 221 50.7
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 1.5e-41 173.7 156 62.8
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 7.6e-41 171.4 219 50.7
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 1.7e-40 170.2 161 61.5
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 4.9e-40 168.7 152 60.5
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 1.4e-39 167.2 156 61.5
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 4.2e-39 165.6 158 60.1
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 4.2e-39 165.6 164 61.6
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 7.1e-39 164.9 98 79.6
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 7.1e-39 164.9 219 49.3
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 7.1e-39 164.9 219 49.3
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 1.2e-38 164.1 170 60.6
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 4.6e-38 162.2 219 49.8
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 3.9e-37 159.1 202 50.5
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 5.1e-37 158.7 202 52.0
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 8.7e-37 157.9 213 49.8
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 8.7e-37 157.9 117 68.4
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 7.4e-36 154.8 169 59.8
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 2.8e-35 152.9 163 57.7
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 6.2e-35 151.8 164 58.5
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 6.2e-35 151.8 155 54.8
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 6.2e-35 151.8 241 45.2
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 1.8e-34 150.2 168 57.7
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 1.8e-34 150.2 167 56.3
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 1.8e-34 150.2 168 57.7
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 1.8e-34 150.2 168 57.7
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 2.4e-34 149.8 169 55.6
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 5.3e-34 148.7 155 54.2
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 2.6e-33 146.4 193 49.7
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 3.4e-33 146.0 168 56.5
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 7.6e-33 144.8 168 56.0
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 7.6e-33 144.8 193 49.7
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-31 141.0 171 53.8
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 1.1e-31 141.0 171 53.8
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 3.2e-31 139.4 171 56.1
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 2.7e-30 136.3 109 60.6
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 6.0e-30 135.2 167 52.7
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 6.0e-30 135.2 167 52.7
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 1.0e-29 134.4 169 50.9
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 3.0e-29 132.9 156 50.6
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 6.7e-29 131.7 167 51.5
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 8.7e-29 131.3 94 69.1
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 8.7e-29 131.3 99 71.7
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 8.7e-29 131.3 99 71.7
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 8.7e-29 131.3 99 71.7
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.5e-28 130.6 145 52.4
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 3.3e-28 129.4 147 51.0
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 2.1e-27 126.7 164 51.8
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.8e-27 125.6 138 56.5
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 6.3e-27 125.2 146 49.3
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 6.9e-26 121.7 219 41.6
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.4e-23 114.0 217 39.6
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 1.9e-23 113.6 86 64.0
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 4.6e-22 109.0 97 54.6
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 4.6e-22 109.0 97 54.6
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 1.3e-19 100.9 145 43.4
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.4e-18 96.7 132 47.7
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 2.4e-18 96.7 110 44.5
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 9.1e-18 94.7 58 81.0
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 9.1e-18 94.7 58 81.0
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 4.5e-17 92.4 127 45.7
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.5e-15 85.5 87 48.3
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 5.5e-15 85.5 87 48.3
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 5.5e-15 85.5 69 71.0
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 2.1e-14 83.6 105 50.5
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 7.4e-12 75.1 44 70.5
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 6.9e-10 68.6 59 50.8
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 1.2e-09 67.8 53 50.9
FAN22G1271 Fragaria x ananassa HOM05D038641 ORTHO05D035590 2.2e-08 63.5 66 57.6
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 7.2e-07 58.5 36 66.7


User provided reference genes

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