Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021086 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.0e-66 256.5 126 100.0
CSS0027294 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 5.2e-66 254.2 126 99.2
CSS0048510 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 5.9e-54 214.2 107 97.2
CSS0008025 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.0e-53 213.4 107 97.2
CSS0046447 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 4.7e-51 204.5 137 78.8
CSS0031941 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.7e-48 196.1 99 96.0
CSS0034141 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 6.4e-48 194.1 99 94.9
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 2.0e-46 189.1 96 95.8
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 6.6e-45 184.1 112 83.9
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 6.6e-45 184.1 112 83.9
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 6.6e-45 184.1 112 83.9
vmacro19341 Vaccinium macrocarpon HOM05D004313 ORTHO05D005036 6.6e-45 184.1 112 83.9
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 1.9e-44 182.6 112 83.0
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 8.1e-43 177.2 112 80.4
CSS0043265 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.4e-42 176.4 99 87.9
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 1.8e-42 176.0 112 80.4
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 1.8e-42 176.0 112 80.4
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 1.8e-42 176.0 112 80.4
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 3.1e-42 175.3 112 79.5
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 8.9e-42 173.7 112 79.5
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 2.6e-41 172.2 115 76.5
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 4.4e-41 171.4 112 77.7
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 4.4e-41 171.4 96 86.5
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 4.4e-41 171.4 112 78.6
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 7.5e-41 170.6 112 78.6
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 1.7e-40 169.5 112 77.7
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 1.7e-40 169.5 112 75.9
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 1.7e-40 169.5 112 75.9
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 2.9e-40 168.7 112 75.9
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 2.9e-40 168.7 112 75.9
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 3.7e-40 168.3 112 75.9
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 3.7e-40 168.3 112 76.8
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 6.4e-40 167.5 112 75.9
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 6.4e-40 167.5 112 75.9
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 6.4e-40 167.5 112 75.0
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 6.4e-40 167.5 112 76.8
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 8.3e-40 167.2 113 76.1
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 1.1e-39 166.8 96 83.3
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 1.1e-39 166.8 112 75.9
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 1.4e-39 166.4 112 75.9
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 1.4e-39 166.4 113 73.5
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 2.4e-39 165.6 112 73.2
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 2.4e-39 165.6 112 75.0
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 3.2e-39 165.2 112 74.1
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 3.2e-39 165.2 112 75.0
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 3.2e-39 165.2 112 75.0
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 5.4e-39 164.5 112 75.9
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 7.1e-39 164.1 112 75.0
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 7.1e-39 164.1 112 75.0
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 1.6e-38 162.9 112 75.0
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 2.7e-38 162.2 112 74.1
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 2.7e-38 162.2 112 74.1
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 2.7e-38 162.2 112 74.1
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 2.7e-38 162.2 112 74.1
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 2.7e-38 162.2 112 74.1
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 2.7e-38 162.2 112 74.1
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 3.5e-38 161.8 112 74.1
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 3.5e-38 161.8 112 74.1
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 3.5e-38 161.8 112 73.2
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 4.6e-38 161.4 112 74.1
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 4.6e-38 161.4 112 74.1
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 4.6e-38 161.4 112 74.1
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 6.0e-38 161.0 112 74.1
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 7.8e-38 160.6 112 72.3
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 7.8e-38 160.6 112 74.1
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 1.0e-37 160.2 112 73.2
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 1.0e-37 160.2 112 75.0
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 1.3e-37 159.8 112 73.2
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 1.7e-37 159.5 112 71.4
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 1.7e-37 159.5 112 71.4
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 1.7e-37 159.5 112 72.3
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 2.3e-37 159.1 112 72.3
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 2.3e-37 159.1 112 73.2
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 3.0e-37 158.7 112 73.2
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 5.1e-37 157.9 112 73.2
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 5.1e-37 157.9 112 72.3
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 5.1e-37 157.9 112 72.3
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 6.6e-37 157.5 112 72.3
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 1.1e-36 156.8 112 71.4
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 1.1e-36 156.8 112 72.3
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.5e-36 156.4 112 72.3
MD14G1189400 Malus domestica HOM05D004313 ORTHO05D005036 1.5e-36 156.4 115 70.4
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 1.5e-36 156.4 112 71.4
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 5.6e-36 154.5 112 71.4
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 1.6e-35 152.9 117 66.7
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 1.6e-35 152.9 112 72.3
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 2.1e-35 152.5 115 68.7
Cpa.g.sc203.11 Carica papaya HOM05D004313 ORTHO05D005036 6.2e-35 151.0 113 69.9
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 8.1e-35 150.6 112 68.8
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 8.1e-35 150.6 112 68.8
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 8.1e-35 150.6 112 68.8
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 8.1e-35 150.6 112 68.8
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.1e-34 150.2 112 67.9
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.1e-34 150.2 112 68.8
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 1.4e-34 149.8 112 68.8
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 1.4e-34 149.8 126 62.7
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 1.4e-34 149.8 112 68.8
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 1.8e-34 149.4 112 67.9
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 4.0e-34 148.3 112 67.9
A09p07780 Brassica napus HOM05D004313 ORTHO05D005036 4.0e-34 148.3 112 67.9
BraA09t36426Z Brassica rapa HOM05D004313 ORTHO05D005036 4.0e-34 148.3 112 67.9
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 4.0e-34 148.3 112 67.9
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 5.2e-34 147.9 112 67.0
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 5.2e-34 147.9 112 67.9
C09p08680 Brassica napus HOM05D004313 ORTHO05D005036 5.2e-34 147.9 112 67.9
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 6.8e-34 147.5 112 67.0
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.2e-33 146.7 112 67.9
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 2.6e-33 145.6 112 67.0
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 2.6e-33 145.6 112 67.0
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 3.4e-33 145.2 112 67.0
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 5.8e-33 144.4 112 65.2
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 1.7e-32 142.9 112 68.8
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 2.9e-32 142.1 116 64.7
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 3.5e-30 135.2 116 62.1
MBI18_g11289_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 2.8e-27 125.6 97 67.0
MBI18_g11290_MAGBIO Magnolia biondii HOM05D004313 ORTHO05D005036 2.8e-27 125.6 97 67.0
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 1.3e-24 116.7 112 56.2
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 5.4e-23 111.3 85 69.4
Mapoly0187s0007 Marchantia polymorpha HOM05D004313 ORTHO05D005036 2.7e-22 109.0 116 47.4
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 1.6e-19 99.8 112 46.4
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 3.6e-19 98.6 112 45.5
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 1.4e-18 96.7 118 45.8
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 1.2e-17 93.6 47 97.9
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 2.0e-17 92.8 50 92.0
arahy.Tifrunner.gnm1.ann1.835HL2 Arachis hypogaea HOM05D004313 ORTHO05D004397 4.4e-17 91.7 48 85.4
arahy.Tifrunner.gnm1.ann1.225J64 Arachis hypogaea HOM05D004313 ORTHO05D005036 2.2e-16 89.4 49 81.6
unitig_744.g24391 Utricularia gibba HOM05D004313 ORTHO05D005036 2.2e-16 89.4 60 70.0
Atru.chr9.2370 Acer truncatum HOM05D004313 ORTHO05D005036 8.4e-16 87.4 49 79.6
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 9.3e-15 84.0 53 81.1
Cre02.g097250 Chlamydomonas reinhardtii HOM05D004313 ORTHO05D005036 8.7e-13 77.4 141 36.9
PRCOL_00006613 Prasinoderma coloniale HOM05D004313 ORTHO05D005036 9.9e-09 63.9 113 34.5
Lj1g0019586 Lotus japonicus HOM05D004313 ORTHO05D005036 2.4e-07 59.3 47 66.0


User provided reference genes

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