Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.4e-59 231.5 118 100.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 3.4e-27 125.2 100 73.0
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 7.6e-27 124.0 93 75.3
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.4e-25 119.8 99 71.7
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.6e-24 116.3 98 67.3
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 2.1e-24 115.9 99 69.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 6.6e-23 110.9 95 68.4
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 1.9e-22 109.4 100 67.0
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 9.6e-22 107.1 109 59.6
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 6.2e-21 104.4 106 56.6
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 6.2e-21 104.4 99 59.6
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.4e-20 102.4 99 57.6
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 4.0e-20 101.7 92 60.9
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 4.0e-20 101.7 106 62.3
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.2e-19 100.1 90 62.2
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.0e-19 99.4 87 65.5
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 2.6e-19 99.0 90 57.8
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 3.4e-19 98.6 85 61.2
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 3.4e-19 98.6 101 64.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.4e-19 98.6 105 56.2
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 4.5e-19 98.2 85 60.0
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 4.5e-19 98.2 99 56.6
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 9.9e-19 97.1 89 62.9
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.7e-18 96.3 98 56.1
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 2.2e-18 95.9 95 57.9
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.2e-18 95.9 98 56.1
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.9e-18 95.5 100 60.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 6.4e-18 94.4 99 55.6
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 8.4e-18 94.0 99 55.6
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 8.4e-18 94.0 95 58.9
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.1e-17 93.6 82 61.0
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.1e-17 93.6 81 69.1
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.1e-17 93.6 99 55.6
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.1e-17 93.6 95 57.9
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.4e-17 93.2 98 55.1
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.4e-17 93.2 99 54.5
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 4.2e-17 91.7 83 60.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 4.2e-17 91.7 113 54.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.4e-17 91.3 74 62.2
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 7.1e-17 90.9 108 50.0
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 7.1e-17 90.9 79 62.0
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 7.1e-17 90.9 104 51.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 7.1e-17 90.9 87 57.5
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 9.3e-17 90.5 98 60.2
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.2e-16 90.1 56 78.6
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.2e-16 90.1 108 51.9
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.1e-16 89.4 93 53.8
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 2.7e-16 89.0 95 53.7
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.5e-16 88.6 103 57.3
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 4.6e-16 88.2 77 57.1
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.3e-15 86.7 78 57.7
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.3e-15 86.7 76 60.5
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.3e-15 86.7 109 52.3
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.8e-15 86.3 94 55.3
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 1.8e-15 86.3 111 47.7
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.3e-15 85.9 104 52.9
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.3e-15 85.9 104 52.9
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 2.3e-15 85.9 79 55.7
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 2.3e-15 85.9 89 53.9
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 3.9e-15 85.1 95 56.8
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 3.9e-15 85.1 109 51.4
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-14 83.6 96 52.1
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 1.1e-14 83.6 76 61.8
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.5e-14 83.2 98 53.1
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 1.9e-14 82.8 120 47.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.9e-14 82.8 99 54.5
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.9e-14 82.8 93 51.6
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.9e-14 82.8 87 56.3
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.5e-14 82.4 99 54.5
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.5e-14 82.4 101 53.5
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.3e-14 81.6 85 61.2
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.3e-14 81.6 101 50.5
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 5.6e-14 81.3 81 49.4
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.6e-14 81.3 89 56.2
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 5.6e-14 81.3 87 58.6
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.1e-13 79.3 93 54.8
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 2.1e-13 79.3 85 56.5
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 2.1e-13 79.3 74 54.1
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 2.8e-13 79.0 96 49.0
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 2.8e-13 79.0 96 49.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 2.8e-13 79.0 77 53.2
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 3.7e-13 78.6 96 52.1
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 4.8e-13 78.2 64 64.1
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 4.8e-13 78.2 87 49.4
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 4.8e-13 78.2 95 49.5
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.1e-12 77.0 76 51.3
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.4e-12 76.6 108 43.5
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.4e-12 76.6 81 56.8
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.8e-12 76.3 97 49.5
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 2.4e-12 75.9 116 37.9
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.4e-12 75.9 105 46.7
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.4e-12 75.9 86 52.3
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 3.1e-12 75.5 95 42.1
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 4.0e-12 75.1 81 50.6
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 4.0e-12 75.1 105 45.7
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.0e-12 75.1 77 57.1
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 5.3e-12 74.7 81 51.9
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 6.9e-12 74.3 93 41.9
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 6.9e-12 74.3 100 48.0
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 6.9e-12 74.3 90 44.4
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 9.0e-12 73.9 84 51.2
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 9.0e-12 73.9 81 51.9
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 9.0e-12 73.9 92 44.6
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.2e-11 73.6 99 49.5
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.5e-11 73.2 100 52.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 2.0e-11 72.8 86 51.2
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.0e-11 72.8 105 45.7
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.6e-11 72.4 81 46.9
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.6e-11 72.4 81 46.9
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 3.4e-11 72.0 79 50.6
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 3.4e-11 72.0 96 43.8
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 4.5e-11 71.6 60 53.3
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 4.5e-11 71.6 98 45.9
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 4.5e-11 71.6 94 45.7
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 4.5e-11 71.6 94 45.7
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 4.5e-11 71.6 104 48.1
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 4.5e-11 71.6 95 48.4
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 5.8e-11 71.2 92 47.8
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 5.8e-11 71.2 76 48.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 7.6e-11 70.9 86 50.0
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 7.6e-11 70.9 97 47.4
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 7.6e-11 70.9 66 59.1
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 7.6e-11 70.9 92 46.7
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 9.9e-11 70.5 79 45.6
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 2.2e-10 69.3 94 44.7
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.9e-10 68.9 64 56.2
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 3.8e-10 68.6 81 46.9
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 3.8e-10 68.6 93 47.3
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 4.9e-10 68.2 113 43.4
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 6.4e-10 67.8 79 51.9
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 6.4e-10 67.8 92 43.5
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 6.4e-10 67.8 87 48.3
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 8.4e-10 67.4 100 41.0
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.1e-09 67.0 79 51.9
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.1e-09 67.0 79 51.9
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 1.4e-09 66.6 79 50.6
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.9e-09 66.2 103 46.6
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 5.5e-09 64.7 98 49.0
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.7e-08 62.4 91 41.8
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 2.7e-08 62.4 64 53.1
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.3e-07 60.1 45 62.2
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.8e-07 59.7 49 59.2
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.3e-07 59.3 86 44.2
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 3.9e-07 58.5 72 44.4
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 5.1e-07 58.2 69 52.2
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 1.9e-06 56.2 69 50.7
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.9e-06 56.2 64 50.0
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 7.4e-06 54.3 79 41.8


User provided reference genes

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