Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021072 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D018141 8.6e-60 233.4 114 100.0
Actinidia13274 Actinidia chinensis HOM05D000494 ORTHO05D000556 1.3e-36 156.4 121 67.8
Actinidia14633 Actinidia chinensis HOM05D000494 ORTHO05D000556 5.6e-35 151.0 123 65.0
TAR636G3256 Trochodendron aralioides HOM05D000494 ORTHO05D000556 1.4e-33 146.4 121 62.8
CSS0031483 Camellia sinensis var. sinensis HOM05D000494 ORTHO05D000556 1.5e-32 142.9 121 65.3
GSVIVG01035778001 Vitis vinifera HOM05D000494 ORTHO05D000556 3.4e-32 141.7 121 60.3
Prupe.1G471100 Prunus persica HOM05D000494 ORTHO05D000556 4.4e-32 141.4 121 61.2
TAR625G1250 Trochodendron aralioides HOM05D000494 ORTHO05D000556 8.4e-31 137.1 121 61.2
MD08G1140800 Malus domestica HOM05D000494 ORTHO05D000556 1.4e-30 136.3 124 58.1
FAN24G3041 Fragaria x ananassa HOM05D000494 ORTHO05D000556 3.2e-30 135.2 121 57.0
RcHm_v2.0_Chr6g0298921 Rosa chinensis HOM05D000494 ORTHO05D000556 5.4e-30 134.4 121 56.2
PGR044G2549 Punica granatum HOM05D000494 ORTHO05D000556 7.1e-30 134.0 123 56.1
FAN27G0323 Fragaria x ananassa HOM05D000494 ORTHO05D000556 4.6e-29 131.3 122 56.6
FAN20G1133 Fragaria x ananassa HOM05D000494 ORTHO05D000556 6.0e-29 131.0 121 55.4
FAN15G0105 Fragaria x ananassa HOM05D000494 ORTHO05D000556 7.8e-29 130.6 122 56.6
MD15G1117700 Malus domestica HOM05D000494 ORTHO05D000556 7.8e-29 130.6 125 55.2
MBI04_g08376_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D000556 1.7e-28 129.4 114 59.6
Nitab4.5_0004611g0010 Nicotiana tabacum HOM05D000494 ORTHO05D000556 1.7e-28 129.4 117 57.3
Nitab4.5_0003128g0020 Nicotiana tabacum HOM05D000494 ORTHO05D000556 2.3e-28 129.0 117 57.3
Ciclev10008648m.g Citrus clementina HOM05D000494 ORTHO05D000556 6.6e-28 127.5 126 53.2
Nn8g39318 Nelumbo nucifera HOM05D000494 ORTHO05D000556 1.9e-27 125.9 122 57.4
Thecc.09G146600 Theobroma cacao HOM05D000494 ORTHO05D000556 1.9e-27 125.9 115 56.5
QL12p031598 Quercus lobata HOM05D000494 ORTHO05D018141 2.5e-27 125.6 111 55.0
Rhsim07G0148900 Rhododendron simsii HOM05D000494 ORTHO05D000556 9.6e-27 123.6 125 52.0
THA.LOC104818629 Tarenaya hassleriana HOM05D000494 ORTHO05D000556 1.2e-26 123.2 130 52.3
Atru.chr7.2346 Acer truncatum HOM05D000494 ORTHO05D018141 1.6e-26 122.9 109 60.6
SalBow4G2276 Salvia bowleyana HOM05D000494 ORTHO05D000556 1.6e-26 122.9 129 53.5
Duzib168G1398 Durio zibethinus HOM05D000494 ORTHO05D000556 2.8e-26 122.1 112 55.4
Cfa013202 Carpinus fangiana HOM05D000494 ORTHO05D000556 4.7e-26 121.3 118 53.4
PGSC0003DMG400026085 Solanum tuberosum HOM05D000494 ORTHO05D000556 6.2e-26 120.9 117 55.6
CAN.G199.32 Capsicum annuum HOM05D000494 ORTHO05D000556 8.1e-26 120.6 113 57.5
Haze_21607 Corylus avellana HOM05D000494 ORTHO05D000556 1.1e-25 120.2 118 54.2
Solyc06g065610.3 Solanum lycopersicum HOM05D000494 ORTHO05D000556 1.1e-25 120.2 117 54.7
CiPaw.08G014400 Carya illinoinensis HOM05D000494 ORTHO05D000556 1.4e-25 119.8 112 55.4
MSTRG.25863 Avicennia marina HOM05D000494 ORTHO05D000556 1.8e-25 119.4 128 50.0
DCAR_001032 Daucus carota HOM05D000494 ORTHO05D000556 3.1e-25 118.6 94 63.8
Hund03008 Selenicereus undatus HOM05D000494 ORTHO05D000556 5.2e-25 117.9 121 52.9
Sopen06g024070 Solanum pennellii HOM05D000494 ORTHO05D000556 5.2e-25 117.9 117 53.8
AL4G17090 Arabidopsis lyrata HOM05D000494 ORTHO05D000556 1.5e-24 116.3 129 47.3
Potri.006G248400 Populus trichocarpa HOM05D000494 ORTHO05D000556 2.0e-24 115.9 118 52.5
EL10Ac2g02558 Beta vulgaris HOM05D000494 ORTHO05D000556 2.6e-24 115.5 115 53.9
Potri.018G033000 Populus trichocarpa HOM05D000494 ORTHO05D000556 4.4e-24 114.8 114 51.8
Manes.03G018800 Manihot esculenta HOM05D000494 ORTHO05D000556 7.6e-24 114.0 121 52.1
SGA_v2.0_scaffold448G51774 Striga asiatica HOM05D000494 ORTHO05D000556 7.6e-24 114.0 129 49.6
THA.LOC104803824 Tarenaya hassleriana HOM05D000494 ORTHO05D000556 7.6e-24 114.0 116 51.7
Carub.0004s0539 Capsella rubella HOM05D000494 ORTHO05D000556 1.3e-23 113.2 128 46.1
AUR62024858 Chenopodium quinoa HOM05D000494 ORTHO05D000556 1.7e-23 112.8 121 52.1
Aa31sc251G60 Aethionema arabicum HOM05D000494 ORTHO05D000556 2.2e-23 112.5 133 47.4
Peaxi162Scf00075g02123 Petunia axillaris HOM05D000494 ORTHO05D000556 2.2e-23 112.5 105 52.4
AUR62032363 Chenopodium quinoa HOM05D000494 ORTHO05D000556 2.9e-23 112.1 121 52.1
Lj7A715T36 Lonicera japonica HOM05D000494 ORTHO05D000556 2.9e-23 112.1 69 76.8
Atru.chr7.1776 Acer truncatum HOM05D000494 ORTHO05D018141 3.8e-23 111.7 109 54.1
Thhalv10000194m.g Eutrema salsugineum HOM05D000494 ORTHO05D000556 3.8e-23 111.7 132 47.7
PSO017G6808 Papaver somniferum HOM05D000494 ORTHO05D000556 3.8e-23 111.7 122 52.5
MSTRG.11747 Avicennia marina HOM05D000494 ORTHO05D000556 4.9e-23 111.3 128 50.8
AT2G25620 Arabidopsis thaliana HOM05D000494 ORTHO05D000556 1.1e-22 110.2 130 45.4
Sp4g05180 Schrenkiella parvula HOM05D000494 ORTHO05D000556 1.4e-22 109.8 134 45.5
Migut.A00289 Erythranthe guttata HOM05D000494 ORTHO05D000556 1.9e-22 109.4 94 58.5
TWI34G0349 Tripterygium wilfordii HOM05D000494 ORTHO05D000556 2.4e-22 109.0 121 52.9
PSO170G2362 Papaver somniferum HOM05D000494 ORTHO05D000556 4.2e-22 108.2 122 50.0
Sc09g0008730 Simmondsia chinensis HOM05D000494 ORTHO05D000556 4.2e-22 108.2 114 53.5
COL.COLO4_24025 Corchorus olitorius HOM05D000494 ORTHO05D000556 5.4e-22 107.8 112 50.9
CARHR115680 Cardamine hirsuta HOM05D000494 ORTHO05D000556 9.3e-22 107.1 128 45.3
Glyma.04G069900 Glycine max HOM05D000494 ORTHO05D000556 1.6e-21 106.3 98 56.1
Aqoxy7G01924 Aquilegia oxysepala HOM05D000494 ORTHO05D000556 2.1e-21 105.9 99 55.6
VMungo1309G2622 Vigna mungo HOM05D000494 ORTHO05D000556 2.7e-21 105.5 98 56.1
Gohir.A05G009800 Gossypium hirsutum HOM05D000494 ORTHO05D000556 3.5e-21 105.1 113 50.4
ECA246G1806 Erigeron canadensis HOM05D000103 ORTHO05D000049 7.8e-21 104.0 99 51.5
Gohir.D05G010500 Gossypium hirsutum HOM05D000494 ORTHO05D000556 7.8e-21 104.0 113 50.4
Gorai.009G010900 Gossypium raimondii HOM05D000494 ORTHO05D000556 7.8e-21 104.0 113 50.4
Glyma.06G071900 Glycine max HOM05D000494 ORTHO05D000556 1.0e-20 103.6 98 54.1
A09p55520 Brassica napus HOM05D000494 ORTHO05D000556 1.3e-20 103.2 132 42.4
BraA09t40954Z Brassica rapa HOM05D000494 ORTHO05D000556 1.3e-20 103.2 132 42.4
arahy.Tifrunner.gnm1.ann1.24PQDM Arachis hypogaea HOM05D000494 ORTHO05D000556 3.0e-20 102.1 109 48.6
BcaC07g40852 Brassica carinata HOM05D000494 ORTHO05D000556 3.9e-20 101.7 130 42.3
arahy.Tifrunner.gnm1.ann1.84MHXV Arachis hypogaea HOM05D000494 ORTHO05D000556 5.1e-20 101.3 109 48.6
Cc11_g01410 Coffea canephora HOM05D000494 ORTHO05D000556 5.1e-20 101.3 112 51.8
Phvul.009G096300 Phaseolus vulgaris HOM05D000494 ORTHO05D000556 5.1e-20 101.3 98 54.1
Sabra06G0194400 Salix brachista HOM05D000494 ORTHO05D000556 1.5e-19 99.8 69 62.3
C08p38500 Brassica napus HOM05D000494 ORTHO05D000556 1.9e-19 99.4 132 40.9
BolC8t51422H Brassica oleracea HOM05D000494 ORTHO05D000556 7.3e-19 97.4 132 40.2
Zm00001eb385910 Zea mays HOM05D000494 ORTHO05D000556 7.3e-19 97.4 91 49.5
BcaB08g35203 Brassica carinata HOM05D000494 ORTHO05D000556 9.6e-19 97.1 127 44.1
Dinv30198 Davidia involucrata HOM05D000494 ORTHO05D000556 2.1e-18 95.9 92 64.1
Lalb_Chr08g0243871 Lupinus albus HOM05D000494 ORTHO05D000556 2.1e-18 95.9 114 45.6
Oeu035825.1 Olea europaea HOM05D000494 ORTHO05D023310 4.8e-18 94.7 69 65.2
Medtr3g107880 Medicago truncatula HOM05D000494 ORTHO05D000556 5.3e-17 91.3 125 45.6
Ca_15709_v3 Cicer arietinum L. HOM05D000494 ORTHO05D000556 6.9e-17 90.9 82 57.3
ATR0083G027 Amborella trichopoda HOM05D000494 ORTHO05D000556 9.0e-17 90.5 124 46.8
HanXRQChr08g0236301 Helianthus annuus HOM05D000494 ORTHO05D000556 9.0e-17 90.5 92 48.9
Psat5g027080 Pisum sativum HOM05D000494 ORTHO05D000556 1.2e-16 90.1 124 45.2
HPP92_023334 Vanilla planifolia HOM05D000494 ORTHO05D000556 4.5e-16 88.2 97 47.4
Lj1g0002787 Lotus japonicus HOM05D000494 ORTHO05D000556 4.9e-15 84.7 79 53.2
Sabra18G0033800 Salix brachista HOM05D000494 ORTHO05D000556 4.9e-15 84.7 101 47.5
Eucgr.C02836 Eucalyptus grandis HOM05D000494 ORTHO05D000556 6.4e-15 84.3 65 56.9
Lalb_Chr23g0268851 Lupinus albus HOM05D000494 ORTHO05D000556 6.4e-15 84.3 109 43.1
PGR142G3638 Punica granatum HOM05D000494 ORTHO05D024157 1.1e-14 83.6 69 55.1
Lsat_1_v5_gn_5_32440 Lactuca sativa HOM05D000494 ORTHO05D000556 2.7e-13 79.0 68 52.9
Os06g0597200 Oryza sativa ssp. japonica HOM05D000494 ORTHO05D000556 6.0e-13 77.8 90 41.1
unitig_748.g7369 Utricularia gibba HOM05D000494 ORTHO05D000556 5.1e-12 74.7 61 57.4
Ah.12g063640 Amaranthus hybridus HOM05D000494 ORTHO05D018141 7.4e-11 70.9 54 61.1
CDE06G1103 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 2.1e-10 69.3 66 48.5
CDE04G2007 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 4.8e-10 68.2 53 52.8
CANSAT11G1060 Cannabis sativa HOM05D000494 ORTHO05D000556 2.4e-09 65.9 65 44.6
Hma1.2p1_0182F.1_g080400 Hydrangea macrophylla HOM05D000494 ORTHO05D000556 3.4e-08 62.0 47 48.9
Lj7A450T51 Lonicera japonica HOM05D000494 ORTHO05D000556 4.5e-08 61.6 49 51.0
MBI15_g25664_MAGBIO Magnolia biondii HOM05D000494 ORTHO05D000556 4.5e-08 61.6 55 45.5
Manes.06G041800 Manihot esculenta HOM05D000494 ORTHO05D000556 5.8e-08 61.2 59 44.1
Manes.14G137700 Manihot esculenta HOM05D000494 ORTHO05D000556 5.8e-08 61.2 68 42.6
COL.COLO4_24116 Corchorus olitorius HOM05D000494 ORTHO05D000556 7.6e-08 60.8 49 49.0
GSVIVG01022296001 Vitis vinifera HOM05D000494 ORTHO05D000556 7.6e-08 60.8 64 39.1
FAN23G1845 Fragaria x ananassa HOM05D000894 ORTHO05D002325 9.9e-08 60.5 47 48.9
Lsat_1_v5_gn_5_94240 Lactuca sativa HOM05D000494 ORTHO05D000556 9.9e-08 60.5 59 45.8
Rhsim01G0052100 Rhododendron simsii HOM05D000494 ORTHO05D000556 1.3e-07 60.1 47 51.1
Hma1.2p1_0949F.1_g240630 Hydrangea macrophylla HOM05D000494 ORTHO05D000556 1.7e-07 59.7 49 49.0
Os02g0799000 Oryza sativa ssp. japonica HOM05D000494 ORTHO05D000556 1.7e-07 59.7 53 39.6
TWI34G1178 Tripterygium wilfordii HOM05D000494 ORTHO05D000556 1.7e-07 59.7 49 46.9
vmacro21888 Vaccinium macrocarpon HOM05D000494 ORTHO05D000556 1.7e-07 59.7 69 40.6
Haze_19328 Corylus avellana HOM05D000494 ORTHO05D020297 2.2e-07 59.3 50 44.0
AUR62042584 Chenopodium quinoa HOM05D000494 ORTHO05D000556 4.9e-07 58.2 88 35.2
Ciclev10020453m.g Citrus clementina HOM05D000494 ORTHO05D000556 6.4e-07 57.8 89 38.2
Duzib150G1596 Durio zibethinus HOM05D000494 ORTHO05D000556 6.4e-07 57.8 49 46.9
MD15G1160600 Malus domestica HOM05D000494 ORTHO05D000556 6.4e-07 57.8 47 46.8
TWI23G0577 Tripterygium wilfordii HOM05D000494 ORTHO05D000556 6.4e-07 57.8 89 37.1
unitig_899.g14727 Utricularia gibba HOM05D000494 ORTHO05D000556 6.4e-07 57.8 87 36.8
AUR62035145 Chenopodium quinoa HOM05D000494 ORTHO05D000556 8.4e-07 57.4 88 35.2
SEGI_16641 Sequoiadendron giganteum HOM05D000494 ORTHO05D000556 8.4e-07 57.4 112 33.0
Solyc07g007220.3 Solanum lycopersicum HOM05D000494 ORTHO05D000556 8.4e-07 57.4 49 42.9
PGSC0003DMG400007819 Solanum tuberosum HOM05D000494 ORTHO05D000556 8.4e-07 57.4 67 40.3
RcHm_v2.0_Chr6g0280911 Rosa chinensis HOM05D000494 ORTHO05D000556 1.1e-06 57.0 86 32.6
SEGI_13617 Sequoiadendron giganteum HOM05D000494 ORTHO05D000556 1.1e-06 57.0 96 33.3
SEGI_19270 Sequoiadendron giganteum HOM05D000494 ORTHO05D000556 1.1e-06 57.0 96 33.3
Sopen12g005470 Solanum pennellii HOM05D000494 ORTHO05D000556 1.1e-06 57.0 67 40.3
CANSAT25G2901 Cannabis sativa HOM05D000494 ORTHO05D000556 1.4e-06 56.6 98 33.7
PGR042G1722 Punica granatum HOM05D000494 ORTHO05D000556 1.4e-06 56.6 55 45.5
TPR.G15787 Trifolium pratense HOM05D000494 ORTHO05D000556 1.4e-06 56.6 47 44.7
Aqoxy6G01595 Aquilegia oxysepala HOM05D000494 ORTHO05D000556 1.9e-06 56.2 90 34.4
MSTRG.6087 Avicennia marina HOM05D000494 ORTHO05D000556 1.9e-06 56.2 66 40.9
EL10Ac8g18808 Beta vulgaris HOM05D000494 ORTHO05D000556 1.9e-06 56.2 68 38.2
CAN.G551.19 Capsicum annuum HOM05D000494 ORTHO05D000556 1.9e-06 56.2 82 36.6
Glyma.17G105800 Glycine max HOM05D000494 ORTHO05D000556 1.9e-06 56.2 47 44.7
Sabra06G0042900 Salix brachista HOM05D000494 ORTHO05D000556 1.9e-06 56.2 49 49.0
TPR.G38143 Trifolium pratense HOM05D000494 ORTHO05D000556 1.9e-06 56.2 110 31.8
CAN.G459.20 Capsicum annuum HOM05D000494 ORTHO05D020297 2.4e-06 55.8 105 33.3
FAN08G1671 Fragaria x ananassa HOM05D000494 ORTHO05D000556 2.4e-06 55.8 95 33.7
PSO170G1179 Papaver somniferum HOM05D000494 ORTHO05D000556 2.4e-06 55.8 49 49.0
Sabra18G0097900 Salix brachista HOM05D000494 ORTHO05D000556 2.4e-06 55.8 49 44.9
Sopen07g003270 Solanum pennellii HOM05D000494 ORTHO05D000556 2.4e-06 55.8 49 42.9
CDE06G1996 Ceratophyllum demersum HOM05D000494 ORTHO05D000556 3.2e-06 55.5 57 36.8
HanXRQChr03g0063961 Helianthus annuus HOM05D000494 ORTHO05D000556 3.2e-06 55.5 65 41.5
HanXRQChr09g0243021 Helianthus annuus HOM05D000494 ORTHO05D000556 3.2e-06 55.5 65 41.5
Lsat_1_v5_gn_7_46741 Lactuca sativa HOM05D000494 ORTHO05D000556 3.2e-06 55.5 59 39.0
FAN04G1233 Fragaria x ananassa HOM05D000494 ORTHO05D000556 4.2e-06 55.1 95 32.6
FAN18G3646 Fragaria x ananassa HOM05D000494 ORTHO05D000556 4.2e-06 55.1 95 33.7
FAN28G2574 Fragaria x ananassa HOM05D000494 ORTHO05D000556 4.2e-06 55.1 97 30.9
MD02G1014300 Malus domestica HOM05D000494 ORTHO05D000556 4.2e-06 55.1 88 30.7
Carub.0001s3715 Capsella rubella HOM05D000494 ORTHO05D000556 5.5e-06 54.7 84 35.7
FvH4_1g01790 Fragaria vesca HOM05D000494 ORTHO05D000556 5.5e-06 54.7 97 30.9
THA.LOC104821803 Tarenaya hassleriana HOM05D000494 ORTHO05D000556 5.5e-06 54.7 48 50.0
Ah.00g001050 Amaranthus hybridus HOM05D000494 ORTHO05D000556 7.1e-06 54.3 121 26.4
Ah.09g223980 Amaranthus hybridus HOM05D000494 ORTHO05D000556 7.1e-06 54.3 71 33.8
EL10Ac1g01909 Beta vulgaris HOM05D000494 ORTHO05D000556 7.1e-06 54.3 104 30.8
Ciclev10008623m.g Citrus clementina HOM05D000494 ORTHO05D000556 7.1e-06 54.3 49 44.9
Haze_05110 Corylus avellana HOM05D000494 ORTHO05D000556 7.1e-06 54.3 75 33.3
MD05G1139300 Malus domestica HOM05D000494 ORTHO05D000556 7.1e-06 54.3 86 32.6
PGSC0003DMG400030694 Solanum tuberosum HOM05D000494 ORTHO05D000556 7.1e-06 54.3 46 43.5
COL.COLO4_37753 Corchorus olitorius HOM05D000494 ORTHO05D000556 9.3e-06 53.9 55 41.8
Dinv31969 Davidia involucrata HOM05D000494 ORTHO05D000556 9.3e-06 53.9 104 32.7
Duzib041G0119 Durio zibethinus HOM05D000494 ORTHO05D000556 9.3e-06 53.9 63 42.9
MD10G1141800 Malus domestica HOM05D000494 ORTHO05D000556 9.3e-06 53.9 95 31.6
PGR142G1971 Punica granatum HOM05D000494 ORTHO05D000556 9.3e-06 53.9 29 72.4


User provided reference genes

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