Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 2.6e-56 221.9 115 100.0
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-35 153.3 108 76.9
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.3e-34 149.8 114 73.7
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 2.1e-29 132.5 110 68.2
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 7.9e-29 130.6 114 64.9
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.8e-25 119.4 98 68.4
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 3.1e-25 118.6 108 66.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 5.9e-24 114.4 102 63.7
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.0e-23 113.6 93 68.8
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 4.2e-22 108.2 103 63.1
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 5.5e-22 107.8 95 63.2
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 9.3e-22 107.1 103 61.2
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 9.3e-22 107.1 106 56.6
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 1.6e-21 106.3 103 59.2
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 3.5e-21 105.1 106 58.5
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 3.5e-21 105.1 108 60.2
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.5e-21 105.1 112 58.0
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.6e-21 104.8 106 56.6
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 4.6e-21 104.8 108 55.6
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.1e-21 104.4 106 56.6
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.0e-20 103.6 103 58.3
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 1.8e-20 102.8 109 56.0
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.8e-20 102.8 108 55.6
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.3e-20 102.4 105 59.0
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 3.0e-20 102.1 100 61.0
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 3.9e-20 101.7 106 55.7
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.1e-20 101.3 102 58.8
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 8.7e-20 100.5 112 58.0
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.1e-19 100.1 106 56.6
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.1e-19 100.1 96 60.4
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 1.5e-19 99.8 112 59.8
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 1.9e-19 99.4 113 55.8
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 5.7e-19 97.8 113 54.9
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 5.7e-19 97.8 109 58.7
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 9.7e-19 97.1 106 59.4
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 9.7e-19 97.1 87 65.5
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.3e-18 96.7 107 56.1
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 8.2e-18 94.0 96 57.3
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 8.2e-18 94.0 95 53.7
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 8.2e-18 94.0 97 57.7
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 8.2e-18 94.0 106 53.8
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 1.1e-17 93.6 97 58.8
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 3.1e-17 92.0 100 54.0
Actinidia02072 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.1e-17 91.7 85 63.5
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 4.1e-17 91.7 103 53.4
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 5.3e-17 91.3 95 56.8
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.3e-17 91.3 107 54.2
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 6.9e-17 90.9 95 55.8
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 6.9e-17 90.9 95 53.7
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.5e-16 89.7 97 57.7
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.0e-16 89.4 95 55.8
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 3.4e-16 88.6 99 53.5
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 3.4e-16 88.6 105 51.4
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 5.9e-16 87.8 106 55.7
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 7.7e-16 87.4 98 51.0
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 2.2e-15 85.9 106 50.9
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.1e-14 83.6 95 52.6
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.4e-14 83.2 95 52.6
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 9.4e-14 80.5 98 50.0
THA.LOC104814010 Tarenaya hassleriana HOM05D003683 ORTHO05D004143 1.2e-13 80.1 95 51.6
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.6e-13 79.7 102 48.0
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 2.1e-13 79.3 104 48.1
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.7e-13 79.0 98 49.0
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 4.6e-13 78.2 98 48.0
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.0e-12 77.0 101 44.6
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 1.4e-12 76.6 72 62.5
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 1.4e-12 76.6 101 44.6
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 1.4e-12 76.6 101 44.6
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.8e-12 76.3 104 49.0
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.3e-12 75.9 101 44.6
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 2.3e-12 75.9 94 51.1
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 5.1e-12 74.7 96 51.0
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 5.1e-12 74.7 99 49.5
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 5.1e-12 74.7 101 44.6
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 8.8e-12 73.9 92 54.3
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.0e-11 72.8 102 46.1
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 2.5e-11 72.4 85 51.8
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 2.5e-11 72.4 101 46.5
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 5.7e-11 71.2 100 47.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 5.7e-11 71.2 102 47.1
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 1.3e-10 70.1 95 46.3
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.8e-10 68.9 103 44.7
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 2.8e-10 68.9 93 51.6
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 2.8e-10 68.9 70 52.9
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.7e-10 68.6 91 49.5
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 4.8e-10 68.2 102 48.0
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 8.2e-10 67.4 100 47.0
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.1e-09 67.0 107 40.2
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.4e-09 66.6 93 49.5
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 1.8e-09 66.2 97 48.5
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 2.4e-09 65.9 87 47.1
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 2.4e-09 65.9 99 43.4
ATR0810G009 Amborella trichopoda HOM05D003683 ORTHO05D004143 3.1e-09 65.5 90 44.4
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 3.1e-09 65.5 93 45.2
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.1e-09 65.1 99 44.4
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 5.3e-09 64.7 93 45.2
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 6.9e-09 64.3 92 46.7
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 6.9e-09 64.3 93 46.2
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.9e-09 64.3 95 40.0
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 9.1e-09 63.9 93 45.2
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 1.2e-08 63.5 97 44.3
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-08 63.5 93 44.1
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 1.2e-08 63.5 97 44.3
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 1.2e-08 63.5 97 44.3
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.2e-08 63.5 93 44.1
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.6e-08 62.4 93 45.2
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 2.6e-08 62.4 103 45.6
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 97 44.3
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 93 44.1
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 93 44.1
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 3.4e-08 62.0 93 44.1
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 3.4e-08 62.0 57 61.4
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 4.5e-08 61.6 93 46.2
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.5e-08 61.6 78 47.4
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.5e-08 61.6 78 52.6
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.5e-08 61.6 78 51.3
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.9e-08 61.2 54 57.4
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 7.7e-08 60.8 113 39.8
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 1.0e-07 60.5 95 45.3
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 93 44.1
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 1.3e-07 60.1 94 42.6
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.3e-07 60.1 100 42.0
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 2.2e-07 59.3 93 40.9
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 2.2e-07 59.3 93 40.9
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 2.2e-07 59.3 97 43.3
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 2.9e-07 58.9 93 44.1
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 115 37.4
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 3.8e-07 58.5 87 43.7
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 5.0e-07 58.2 101 43.6
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 6.5e-07 57.8 93 41.9
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 6.5e-07 57.8 95 42.1
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.1e-06 57.0 79 44.3
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.4e-06 56.6 93 38.7
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.4e-06 56.6 93 38.7
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.4e-06 56.6 93 38.7
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.4e-06 56.6 99 38.4
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 1.9e-06 56.2 92 39.1
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.9e-06 56.2 103 40.8
Gohir.D01G196550 Gossypium hirsutum HOM05D003360 ORTHO05D003759 1.9e-06 56.2 46 63.0
Gorai.002G240800 Gossypium raimondii HOM05D003360 ORTHO05D003759 1.9e-06 56.2 46 63.0
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 1.9e-06 56.2 53 56.6
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 2.5e-06 55.8 92 42.4
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 3.2e-06 55.5 77 42.9
A07p25250 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-06 55.5 99 38.4
BraA07t30167Z Brassica rapa HOM05D003683 ORTHO05D004143 3.2e-06 55.5 99 37.4
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 3.2e-06 55.5 85 40.0
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.2e-06 55.5 101 42.6
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 4.2e-06 55.1 48 60.4
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.2e-06 55.1 72 43.1
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 4.2e-06 55.1 97 36.1
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 5.5e-06 54.7 91 42.9
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.5e-06 54.7 46 54.3
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 5.5e-06 54.7 69 46.4
Os09g0520500 Oryza sativa ssp. japonica HOM05D003683 ORTHO05D004143 5.5e-06 54.7 43 62.8
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 5.5e-06 54.7 79 46.8
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 5.5e-06 54.7 93 41.9
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 7.2e-06 54.3 82 47.6
Gohir.A01G207150 Gossypium hirsutum HOM05D003360 ORTHO05D003759 7.2e-06 54.3 46 60.9
Lsat_1_v5_gn_3_5041 Lactuca sativa HOM05D003683 ORTHO05D004143 9.4e-06 53.9 91 39.6


User provided reference genes

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