Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021053 Camellia sinensis var. sinensis HOM05D002801 ORTHO05D003002 1.7e-88 329.3 166 100.0
Dinv37307 Davidia involucrata HOM05D002801 ORTHO05D003002 7.6e-49 197.6 117 83.8
Actinidia08779 Actinidia chinensis HOM05D002801 ORTHO05D003002 2.9e-48 195.7 117 82.9
Dinv35783 Davidia involucrata HOM05D002801 ORTHO05D003002 6.0e-46 188.0 117 81.2
GSVIVG01025725001 Vitis vinifera HOM05D002801 ORTHO05D003002 1.7e-45 186.4 117 78.6
vmacro07286 Vaccinium macrocarpon HOM05D002801 ORTHO05D003002 4.3e-44 181.8 118 78.0
Rhsim03G0092600 Rhododendron simsii HOM05D002801 ORTHO05D003002 1.3e-43 180.3 118 77.1
Glyma.02G048100 Glycine max HOM05D002801 ORTHO05D003002 9.0e-42 174.1 117 75.2
Thecc.05G064900 Theobroma cacao HOM05D002801 ORTHO05D003002 1.5e-41 173.3 117 74.4
Lj2A116G73 Lonicera japonica HOM05D002801 ORTHO05D003002 2.6e-41 172.6 118 73.7
Phvul.003G261500 Phaseolus vulgaris HOM05D002801 ORTHO05D003002 3.4e-41 172.2 117 72.6
TAR636G1313 Trochodendron aralioides HOM05D002801 ORTHO05D003002 4.5e-41 171.8 117 73.5
VMungo0251G2590 Vigna mungo HOM05D002801 ORTHO05D003002 4.5e-41 171.8 117 72.6
MD12G1113900 Malus domestica HOM05D002801 ORTHO05D003002 5.8e-41 171.4 117 75.2
Prupe.6G232900 Prunus persica HOM05D002801 ORTHO05D003002 5.8e-41 171.4 117 75.2
Ciclev10011099m.g Citrus clementina HOM05D002801 ORTHO05D003002 6.4e-40 167.9 114 75.4
Gohir.A04G072200 Gossypium hirsutum HOM05D002801 ORTHO05D003002 6.4e-40 167.9 117 72.6
Gohir.D04G110700 Gossypium hirsutum HOM05D002801 ORTHO05D003002 6.4e-40 167.9 117 72.6
Gorai.009G414900 Gossypium raimondii HOM05D002801 ORTHO05D003002 6.4e-40 167.9 117 72.6
TAR633G0396 Trochodendron aralioides HOM05D002801 ORTHO05D003002 6.4e-40 167.9 117 70.1
Hma1.2p1_0205F.1_g087110 Hydrangea macrophylla HOM05D002801 ORTHO05D003002 8.4e-40 167.5 117 75.2
Glyma.16G128300 Glycine max HOM05D002801 ORTHO05D003002 3.2e-39 165.6 117 71.8
Cfa017598 Carpinus fangiana HOM05D002801 ORTHO05D003002 7.1e-39 164.5 117 70.9
Duzib093G0446 Durio zibethinus HOM05D002801 ORTHO05D003002 9.3e-39 164.1 117 72.6
Haze_20554 Corylus avellana HOM05D002801 ORTHO05D003002 1.6e-38 163.3 117 70.1
QL07p043643 Quercus lobata HOM05D002801 ORTHO05D003002 1.6e-38 163.3 117 71.8
Atru.chr8.1823 Acer truncatum HOM05D002801 ORTHO05D003002 2.1e-38 162.9 117 72.6
arahy.Tifrunner.gnm1.ann1.IM29MK Arachis hypogaea HOM05D002801 ORTHO05D003002 2.7e-38 162.5 117 69.2
arahy.Tifrunner.gnm1.ann1.KV6AVL Arachis hypogaea HOM05D002801 ORTHO05D003002 2.7e-38 162.5 117 69.2
Ca_22518_v3 Cicer arietinum L. HOM05D002801 ORTHO05D003002 2.7e-38 162.5 117 70.1
CiPaw.10G130400 Carya illinoinensis HOM05D002801 ORTHO05D003002 7.9e-38 161.0 117 69.2
MELO3C009350.2 Cucumis melo HOM05D002801 ORTHO05D003002 1.3e-37 160.2 105 78.1
CsaV3_3G035910 Cucumis sativus L. HOM05D002801 ORTHO05D003002 1.3e-37 160.2 105 78.1
Nn2g13773 Nelumbo nucifera HOM05D002801 ORTHO05D003002 3.9e-37 158.7 115 69.6
Sed0017434 Sechium edule HOM05D002801 ORTHO05D003002 3.9e-37 158.7 105 76.2
Potri.006G125400 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.1e-36 157.1 117 68.4
Oeu040375.1 Olea europaea HOM05D002801 ORTHO05D003002 1.5e-36 156.8 117 68.4
CANSAT80G2908 Cannabis sativa HOM05D002801 ORTHO05D003002 5.6e-36 154.8 117 70.1
Sc02g0001680 Simmondsia chinensis HOM05D002801 ORTHO05D003002 5.6e-36 154.8 149 56.4
TPR.G24800 Trifolium pratense HOM05D002801 ORTHO05D003002 5.6e-36 154.8 117 66.7
Lalb_Chr09g0333141 Lupinus albus HOM05D002801 ORTHO05D003002 9.6e-36 154.1 117 69.2
MSTRG.26694 Avicennia marina HOM05D002801 ORTHO05D003002 1.3e-35 153.7 119 68.1
Manes.09G067140 Manihot esculenta HOM05D002801 ORTHO05D003002 1.3e-35 153.7 117 68.4
Manes.08G009700 Manihot esculenta HOM05D002801 ORTHO05D003002 1.6e-35 153.3 117 67.5
ClCG10G020190 Citrullus lanatus HOM05D002801 ORTHO05D003002 2.8e-35 152.5 106 76.4
Medtr8g069965 Medicago truncatula HOM05D002801 ORTHO05D003002 2.8e-35 152.5 117 66.7
Nn2g11575 Nelumbo nucifera HOM05D002801 ORTHO05D003002 3.7e-35 152.1 117 67.5
Cpa.g.sc56.26 Carica papaya HOM05D002801 ORTHO05D003002 1.1e-34 150.6 117 65.8
Potri.016G091700 Populus trichocarpa HOM05D002801 ORTHO05D003002 1.1e-34 150.6 117 68.4
RcHm_v2.0_Chr3g0470121 Rosa chinensis HOM05D002801 ORTHO05D003002 1.4e-34 150.2 117 68.4
CiPaw.10G130300 Carya illinoinensis HOM05D002801 ORTHO05D003002 1.8e-34 149.8 117 65.8
Lj4g0021696 Lotus japonicus HOM05D002801 ORTHO05D003002 1.8e-34 149.8 117 67.5
Aqoxy1G00134 Aquilegia oxysepala HOM05D002801 ORTHO05D003002 4.0e-34 148.7 118 67.8
Sabra06G0099000 Salix brachista HOM05D002801 ORTHO05D003002 4.0e-34 148.7 119 64.7
FAN05G5473 Fragaria x ananassa HOM05D002801 ORTHO05D003002 5.3e-34 148.3 117 67.5
SalBow5G1472 Salvia bowleyana HOM05D002801 ORTHO05D003002 5.3e-34 148.3 117 62.4
SalBow5G4156 Salvia bowleyana HOM05D002801 ORTHO05D003002 5.3e-34 148.3 117 62.4
EL10Ac7g16619 Beta vulgaris HOM05D002801 ORTHO05D003002 9.0e-34 147.5 117 66.7
Ah.15g092490 Amaranthus hybridus HOM05D002801 ORTHO05D003002 1.2e-33 147.1 115 63.5
FAN09G1888 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.2e-33 147.1 117 67.5
Sed0003779 Sechium edule HOM05D002801 ORTHO05D003002 1.2e-33 147.1 105 71.4
Eucgr.A01690 Eucalyptus grandis HOM05D002801 ORTHO05D003002 1.5e-33 146.7 117 67.5
Cc04_g12180 Coffea canephora HOM05D002801 ORTHO05D003002 5.8e-33 144.8 117 64.1
FvH4_6g16260 Fragaria vesca HOM05D002801 ORTHO05D003002 5.8e-33 144.8 117 67.5
FAN14G2570 Fragaria x ananassa HOM05D002801 ORTHO05D003002 5.8e-33 144.8 117 67.5
Sabra16G0097400 Salix brachista HOM05D002801 ORTHO05D009785 1.0e-32 144.1 117 65.8
FAN02G3555 Fragaria x ananassa HOM05D002801 ORTHO05D003002 1.3e-32 143.7 105 70.5
Peaxi162Scf00701g00031 Petunia axillaris HOM05D002801 ORTHO05D003002 1.7e-32 143.3 117 64.1
Psat4g113080 Pisum sativum HOM05D002801 ORTHO05D003002 1.7e-32 143.3 117 64.1
PGR004G0677 Punica granatum HOM05D002801 ORTHO05D003002 2.9e-32 142.5 117 67.5
Solyc09g008100.4 Solanum lycopersicum HOM05D002801 ORTHO05D003002 2.5e-31 139.4 117 65.0
Sopen09g002910 Solanum pennellii HOM05D002801 ORTHO05D003002 2.5e-31 139.4 117 65.0
TWI53G0691 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 4.2e-31 138.7 114 64.9
MBI19_g35569_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 5.5e-31 138.3 117 59.8
TWI74G0434 Tripterygium wilfordii HOM05D002801 ORTHO05D003002 7.1e-31 137.9 115 66.1
CAN.G900.43 Capsicum annuum HOM05D002801 ORTHO05D003002 1.2e-30 137.1 117 61.5
Lalb_Chr16g0391251 Lupinus albus HOM05D002801 ORTHO05D003002 2.1e-30 136.3 117 66.7
PSO339G6183 Papaver somniferum HOM05D002801 ORTHO05D003002 2.1e-30 136.3 121 62.8
SGA_v2.0_scaffold35G14132 Striga asiatica HOM05D002801 ORTHO05D003002 2.1e-30 136.3 118 57.6
PSO801G0542 Papaver somniferum HOM05D002801 ORTHO05D003002 3.5e-30 135.6 121 61.2
Nitab4.5_0002632g0070 Nicotiana tabacum HOM05D002801 ORTHO05D003002 6.0e-30 134.8 144 53.5
ECA238G4143 Erigeron canadensis HOM05D002801 ORTHO05D003002 3.9e-29 132.1 117 57.3
THA.LOC104806477 Tarenaya hassleriana HOM05D002801 ORTHO05D003002 5.1e-29 131.7 109 64.2
Migut.L01697 Erythranthe guttata HOM05D002801 ORTHO05D003002 1.1e-28 130.6 117 57.3
MBI11_g28438_MAGBIO Magnolia biondii HOM05D002801 ORTHO05D003002 4.3e-28 128.6 96 63.5
Carub.0004s1880 Capsella rubella HOM05D002801 ORTHO05D003002 1.4e-26 123.6 110 59.1
AT2G36960 Arabidopsis thaliana HOM05D002801 ORTHO05D003002 4.0e-26 122.1 110 57.3
AL4G33200 Arabidopsis lyrata HOM05D002801 ORTHO05D003002 1.2e-25 120.6 110 57.3
CARHR131420 Cardamine hirsuta HOM05D002801 ORTHO05D003002 2.6e-25 119.4 92 65.2
Duzib128G1402 Durio zibethinus HOM05D002801 ORTHO05D003002 1.0e-24 117.5 117 54.7
BcaB01g03805 Brassica carinata HOM05D002801 ORTHO05D003002 1.3e-24 117.1 92 62.0
Thhalv10016298m.g Eutrema salsugineum HOM05D002801 ORTHO05D003002 1.3e-24 117.1 110 55.5
Sp4g19240 Schrenkiella parvula HOM05D002801 ORTHO05D003002 8.4e-24 114.4 110 54.5
Aa31LG5G22170 Aethionema arabicum HOM05D002801 ORTHO05D003002 1.4e-23 113.6 92 62.0
C04p65610 Brassica napus HOM05D002801 ORTHO05D003002 1.4e-23 113.6 106 54.7
BraA04t18309Z Brassica rapa HOM05D002801 ORTHO05D003002 1.4e-23 113.6 106 54.7
Gohir.A01G214500 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.9e-23 113.2 114 57.9
Gohir.D01G203000 Gossypium hirsutum HOM05D002801 ORTHO05D003002 1.9e-23 113.2 114 57.9
CDE06G1853 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 5.5e-23 111.7 114 53.5
BcaC02g11818 Brassica carinata HOM05D002801 ORTHO05D003002 3.5e-22 109.0 110 52.7
C04p11020 Brassica napus HOM05D002801 ORTHO05D003002 3.5e-22 109.0 110 52.7
A05p08890 Brassica napus HOM05D002801 ORTHO05D003002 4.6e-22 108.6 110 52.7
BolC4t22748H Brassica oleracea HOM05D002801 ORTHO05D003002 4.6e-22 108.6 110 52.7
BraA05t19854Z Brassica rapa HOM05D002801 ORTHO05D003002 4.6e-22 108.6 110 52.7
CDE02G0847 Ceratophyllum demersum HOM05D002801 ORTHO05D003002 4.6e-22 108.6 117 52.1
ATR0115G018 Amborella trichopoda HOM05D002801 ORTHO05D003002 6.1e-22 108.2 115 53.0
BcaB02g09317 Brassica carinata HOM05D002801 ORTHO05D003002 6.1e-22 108.2 110 52.7
SHI12444 Sapria himalayana HOM05D002801 ORTHO05D003002 1.0e-21 107.5 120 55.0
HPP92_012371 Vanilla planifolia HOM05D002801 ORTHO05D003002 3.3e-20 102.4 97 59.8
Nitab4.5_0003861g0040 Nicotiana tabacum HOM05D002801 ORTHO05D003002 1.8e-18 96.7 89 57.3
HanXRQChr01g0027631 Helianthus annuus HOM05D002801 ORTHO05D003002 4.1e-18 95.5 63 76.2
DCAR_017687 Daucus carota HOM05D002801 ORTHO05D003002 2.0e-17 93.2 117 46.2
HanXRQChr02g0053371 Helianthus annuus HOM05D002801 ORTHO05D003002 3.4e-17 92.4 69 69.6
Os03g0241100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 7.7e-17 91.3 114 45.6
AUR62026908 Chenopodium quinoa HOM05D002801 ORTHO05D003002 5.5e-15 85.1 109 46.8
AUR62044138 Chenopodium quinoa HOM05D002801 ORTHO05D003002 5.5e-15 85.1 109 45.0
Zm00001eb399030 Zea mays HOM05D002801 ORTHO05D003002 1.2e-14 84.0 118 44.1
Mapoly0009s0010 Marchantia polymorpha HOM05D002801 ORTHO05D003002 1.4e-13 80.5 116 43.1
ECA248G2038 Erigeron canadensis HOM05D002801 ORTHO05D003002 2.3e-13 79.7 73 60.3
Lsat_1_v5_gn_6_11100 Lactuca sativa HOM05D002801 ORTHO05D003002 2.3e-13 79.7 73 58.9
Zm00001eb010280 Zea mays HOM05D002801 ORTHO05D003002 1.1e-10 70.9 72 56.9
HanXRQChr17g0568771 Helianthus annuus HOM05D002801 ORTHO05D003002 2.4e-10 69.7 47 70.2
SMO116G0270 Selaginella moellendorffii HOM05D002801 ORTHO05D003002 7.2e-07 58.2 42 64.3
Os03g0773100 Oryza sativa ssp. japonica HOM05D002801 ORTHO05D003002 3.6e-06 55.8 33 75.8


User provided reference genes

Program Settings