Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021046 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 6.3e-269 930.2 485 100.0
RhsimUnG0054500 Rhododendron simsii HOM05D002474 ORTHO05D006727 1.2e-206 723.4 499 74.9
QL02p080225 Quercus lobata HOM05D002474 ORTHO05D006727 4.1e-204 714.9 481 76.1
Nn4g23008 Nelumbo nucifera HOM05D002474 ORTHO05D006727 1.5e-201 706.4 485 73.4
CSS0037906 Camellia sinensis var. sinensis HOM05D002474 ORTHO05D006727 3.3e-201 705.3 354 100.0
GSVIVG01032597001 Vitis vinifera HOM05D002474 ORTHO05D006727 5.6e-201 704.5 480 77.3
Atru.chr8.2476 Acer truncatum HOM05D002474 ORTHO05D006727 1.2e-198 696.8 478 72.4
Hma1.2p1_0449F.1_g154950 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 8.3e-197 690.6 419 80.7
Thecc.09G254500 Theobroma cacao HOM05D002474 ORTHO05D006727 2.7e-195 685.6 481 70.9
PSO478G4089 Papaver somniferum HOM05D002474 ORTHO05D006727 8.6e-194 680.6 422 78.4
Migut.K01338 Erythranthe guttata HOM05D002474 ORTHO05D006727 1.5e-193 679.9 478 71.3
Eucgr.J02138 Eucalyptus grandis HOM05D002474 ORTHO05D006727 1.5e-193 679.9 475 71.6
Gorai.013G255100 Gossypium raimondii HOM05D002474 ORTHO05D006727 7.3e-193 677.6 481 71.3
Oeu033341.3 Olea europaea HOM05D002474 ORTHO05D006727 9.5e-193 677.2 511 68.1
Solyc02g067480.3 Solanum lycopersicum HOM05D002474 ORTHO05D006727 2.3e-191 672.5 472 70.8
Ciclev10011620m.g Citrus clementina HOM05D002474 ORTHO05D006727 3.1e-191 672.2 477 74.0
Gohir.A13G220300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 5.2e-191 671.4 481 70.5
CAN.G1128.5 Capsicum annuum HOM05D002474 ORTHO05D006727 6.8e-191 671.0 473 71.2
Rhsim10G0032000 Rhododendron simsii HOM05D002474 ORTHO05D006727 7.6e-190 667.5 479 75.2
HanXRQChr17g0547501 Helianthus annuus HOM05D002474 ORTHO05D006727 1.3e-189 666.8 419 77.1
ECA246G0556 Erigeron canadensis HOM05D002474 ORTHO05D006727 2.2e-189 666.0 415 76.9
Sopen02g016630 Solanum pennellii HOM05D002474 ORTHO05D006727 3.8e-189 665.2 472 69.9
Potri.004G130000 Populus trichocarpa HOM05D002474 ORTHO05D006727 6.4e-189 664.5 483 70.4
PSO161G0033 Papaver somniferum HOM05D002474 ORTHO05D006727 1.4e-188 663.3 422 76.8
Aqoxy3G00804 Aquilegia oxysepala HOM05D002474 ORTHO05D006727 4.1e-188 661.8 413 76.8
PGSC0003DMG400006940 Solanum tuberosum HOM05D002474 ORTHO05D006727 5.4e-188 661.4 467 70.7
RcHm_v2.0_Chr2g0169251 Rosa chinensis HOM05D002474 ORTHO05D006727 3.9e-186 655.2 478 68.0
Nitab4.5_0006062g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 6.6e-186 654.4 466 70.4
MELO3C021965.2 Cucumis melo HOM05D002474 ORTHO05D006727 1.1e-185 653.7 411 76.6
CsaV3_5G037800 Cucumis sativus L. HOM05D002474 ORTHO05D006727 1.9e-185 652.9 420 75.2
TAR629G1594 Trochodendron aralioides HOM05D002474 ORTHO05D006727 2.5e-185 652.5 436 74.5
FvH4_6g49390 Fragaria vesca HOM05D002474 ORTHO05D006727 6.2e-184 647.9 478 67.6
Gohir.D13G224300 Gossypium hirsutum HOM05D002474 ORTHO05D006727 6.2e-184 647.9 490 68.6
Lsat_1_v5_gn_3_102300 Lactuca sativa HOM05D002474 ORTHO05D006727 1.8e-183 646.4 455 70.8
Nitab4.5_0002699g0040 Nicotiana tabacum HOM05D002474 ORTHO05D006727 3.4e-182 642.1 403 77.4
CiPaw.04G020500 Carya illinoinensis HOM05D002474 ORTHO05D006727 7.6e-182 641.0 482 69.1
Cfa007503 Carpinus fangiana HOM05D002474 ORTHO05D006727 3.8e-181 638.6 512 64.6
Phvul.004G025500 Phaseolus vulgaris HOM05D002474 ORTHO05D006727 6.4e-181 637.9 416 73.1
Psat1g077640 Pisum sativum HOM05D002474 ORTHO05D006727 1.9e-180 636.3 415 72.8
Sc11g0006920 Simmondsia chinensis HOM05D002474 ORTHO05D006727 1.6e-179 633.3 411 75.7
Lalb_Chr06g0175531 Lupinus albus HOM05D002474 ORTHO05D006727 2.7e-179 632.5 413 71.7
Ca_04259_v3 Cicer arietinum L. HOM05D002474 ORTHO05D006727 1.3e-178 630.2 414 72.0
COL.COLO4_24935 Corchorus olitorius HOM05D002474 ORTHO05D006727 2.3e-178 629.4 416 75.0
Duzib168G1861 Durio zibethinus HOM05D002474 ORTHO05D006727 1.9e-177 626.3 412 75.7
Medtr6g011270 Medicago truncatula HOM05D002474 ORTHO05D006727 2.5e-177 625.9 414 71.7
arahy.Tifrunner.gnm1.ann1.B2F8E8 Arachis hypogaea HOM05D002474 ORTHO05D006727 2.8e-176 622.5 430 70.2
TPR.G4252 Trifolium pratense HOM05D002474 ORTHO05D006727 6.2e-176 621.3 412 72.1
Haze_14590 Corylus avellana HOM05D002474 ORTHO05D006727 1.1e-175 620.5 485 66.0
Lj2g0026556 Lotus japonicus HOM05D002474 ORTHO05D006727 5.8e-174 614.8 414 70.5
THA.LOC104805441 Tarenaya hassleriana HOM05D002474 ORTHO05D006727 2.9e-173 612.5 416 71.4
PGR083G0251 Punica granatum HOM05D002474 ORTHO05D006727 6.4e-173 611.3 417 72.9
ATR0609G116 Amborella trichopoda HOM05D002474 ORTHO05D006727 1.4e-172 610.1 455 69.0
Nitab4.5_0023901g0010 Nicotiana tabacum HOM05D002474 ORTHO05D006727 2.4e-172 609.4 394 75.6
unitig_748.g8621 Utricularia gibba HOM05D002474 ORTHO05D006727 3.2e-172 609.0 415 69.6
Sabra04G0087600 Salix brachista HOM05D002474 ORTHO05D006727 5.4e-172 608.2 528 63.1
SGA_v2.0_scaffold224G42953 Striga asiatica HOM05D002474 ORTHO05D006727 1.2e-171 607.1 430 70.7
Cpa.g.sc14.49 Carica papaya HOM05D002474 ORTHO05D006727 1.8e-170 603.2 495 64.2
Os12g0638800 Oryza sativa ssp. japonica HOM05D002474 ORTHO05D006727 1.6e-168 596.7 411 70.1
BraA04t16928Z Brassica rapa HOM05D002474 ORTHO05D006727 4.8e-168 595.1 441 69.2
Dinv33713 Davidia involucrata HOM05D002474 ORTHO05D006727 1.4e-167 593.6 352 82.7
Carub.0007s3579 Capsella rubella HOM05D002474 ORTHO05D006727 3.1e-167 592.4 415 69.4
CDE08G1502 Ceratophyllum demersum HOM05D002474 ORTHO05D006727 6.9e-167 591.3 411 69.8
Hund13252 Selenicereus undatus HOM05D002474 ORTHO05D006727 3.4e-166 589.0 479 64.7
Zm00001eb033100 Zea mays HOM05D002474 ORTHO05D006727 4.5e-166 588.6 451 63.9
FAN02G0112 Fragaria x ananassa HOM05D002474 ORTHO05D006727 7.6e-166 587.8 478 63.4
CARHR262240 Cardamine hirsuta HOM05D002474 ORTHO05D006727 1.3e-165 587.0 411 69.6
TWI60G0106 Tripterygium wilfordii HOM05D002474 ORTHO05D006727 3.2e-164 582.4 471 64.5
AL7G50200 Arabidopsis lyrata HOM05D002474 ORTHO05D006727 9.3e-164 580.9 411 69.3
Aa31LG9G1670 Aethionema arabicum HOM05D002474 ORTHO05D006727 2.1e-163 579.7 412 69.7
Ah.12g065360 Amaranthus hybridus HOM05D002474 ORTHO05D006727 2.7e-163 579.3 411 69.6
AT5G39940 Arabidopsis thaliana HOM05D002474 ORTHO05D006727 3.5e-163 578.9 419 68.0
VMungo0464G0136 Vigna mungo HOM05D002474 ORTHO05D006727 7.9e-163 577.8 471 62.8
arahy.Tifrunner.gnm1.ann1.DRNA5E Arachis hypogaea HOM05D002474 ORTHO05D006727 8.7e-162 574.3 430 65.6
DCAR_011168 Daucus carota HOM05D002474 ORTHO05D006727 1.9e-161 573.2 401 72.1
Glyma.19G019000 Glycine max HOM05D002474 ORTHO05D006727 1.9e-161 573.2 419 66.3
FAN14G2185 Fragaria x ananassa HOM05D002474 ORTHO05D006727 4.3e-161 572.0 510 59.6
Peaxi162Scf00059g00319 Petunia axillaris HOM05D002474 ORTHO05D006727 7.4e-161 571.2 456 64.9
Thhalv10028129m.g Eutrema salsugineum HOM05D002474 ORTHO05D006727 1.6e-160 570.1 411 69.6
CANSAT64G2711 Cannabis sativa HOM05D002474 ORTHO05D006727 1.1e-156 557.4 476 63.0
EL10Ac2g02929 Beta vulgaris HOM05D002474 ORTHO05D006727 1.4e-156 557.0 411 67.9
ClCG09G018440 Citrullus lanatus HOM05D002474 ORTHO05D006727 2.3e-154 549.7 552 53.8
AUR62031654 Chenopodium quinoa HOM05D002474 ORTHO05D006727 6.7e-154 548.1 421 65.1
Sed0010242 Sechium edule HOM05D002474 ORTHO05D006727 6.7e-154 548.1 362 73.2
vmacro05750 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 1.5e-153 547.0 430 68.1
FAN09G4837 Fragaria x ananassa HOM05D002474 ORTHO05D006727 2.2e-152 543.1 510 57.8
FAN05G2709 Fragaria x ananassa HOM05D002474 ORTHO05D006727 6.3e-152 541.6 479 59.9
BcaB06g27397 Brassica carinata HOM05D002474 ORTHO05D006727 3.8e-149 532.3 404 66.6
A04p12710 Brassica napus HOM05D002474 ORTHO05D006727 1.3e-144 517.3 400 66.8
C04p46420 Brassica napus HOM05D002474 ORTHO05D006727 1.3e-144 517.3 400 64.5
AagrBONN_evm.TU.Sc2ySwM_369.199 Anthoceros agrestis HOM05D002474 ORTHO05D006727 3.3e-137 492.7 417 56.8
HanXRQChr16g0519921 Helianthus annuus HOM05D002474 ORTHO05D006727 6.3e-136 488.4 324 74.4
Prupe.3G272800 Prunus persica HOM05D002474 ORTHO05D006727 2.4e-135 486.5 373 67.3
SalBow1G0883 Salvia bowleyana HOM05D002474 ORTHO05D006727 1.0e-133 481.1 478 55.6
Pp3c23_2270 Physcomitrium patens HOM05D002474 ORTHO05D006727 6.5e-133 478.4 411 58.2
Mapoly0035s0063 Marchantia polymorpha HOM05D002474 ORTHO05D006727 1.8e-130 470.3 409 56.2
AUR62018296 Chenopodium quinoa HOM05D002474 ORTHO05D006727 3.8e-125 452.6 415 57.6
Hma1.2p1_0449F.1_g154940 Hydrangea macrophylla HOM05D002474 ORTHO05D006727 1.4e-122 444.1 311 72.7
Manes.S095220 Manihot esculenta HOM05D002474 ORTHO05D006727 6.8e-114 415.2 306 68.3
SMO137G0254 Selaginella moellendorffii HOM05D002474 ORTHO05D006727 4.4e-113 412.5 454 47.8
HPP92_014139 Vanilla planifolia HOM05D002474 ORTHO05D006727 1.0e-109 401.4 454 50.4
Cc07_g02920 Coffea canephora HOM05D002474 ORTHO05D006727 2.1e-99 367.1 284 66.9
QL02p080117 Quercus lobata HOM05D002474 ORTHO05D006727 1.4e-98 364.4 267 72.7
QL02p080121 Quercus lobata HOM05D002474 ORTHO05D006727 1.7e-85 320.9 194 79.9
Rhsim10G0031600 Rhododendron simsii HOM05D002474 ORTHO05D006727 2.1e-83 313.9 229 71.6
CBR_g50657 Chara braunii HOM05D002474 ORTHO05D006727 3.5e-78 296.6 263 56.7
Cc07_g02930 Coffea canephora HOM05D002474 ORTHO05D006727 3.9e-77 293.1 184 76.1
Lj7A402G46 Lonicera japonica HOM05D002474 ORTHO05D006727 2.1e-75 287.3 300 57.0
Hund13251 Selenicereus undatus HOM05D002474 ORTHO05D006727 3.4e-65 253.4 167 75.4
BolC4t26228H Brassica oleracea HOM05D002474 ORTHO05D006727 1.1e-55 221.9 187 61.5
Lsat_1_v5_gn_6_77521 Lactuca sativa HOM05D002474 ORTHO05D006727 3.7e-51 206.8 260 45.4
HanXRQChr09g0265421 Helianthus annuus HOM05D002474 ORTHO05D006727 2.5e-44 184.1 121 71.9
Lj7A402G47 Lonicera japonica HOM05D002474 ORTHO05D006727 7.4e-44 182.6 161 71.4
Actinidia35021 Actinidia chinensis HOM05D002474 ORTHO05D006727 7.6e-41 172.6 276 44.2
SEGI_13584 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 8.4e-40 169.1 146 57.5
SpUN0485_0010 Schrenkiella parvula HOM05D002474 ORTHO05D006727 7.1e-39 166.0 97 78.4
CBR_g59258 Chara braunii HOM05D002474 ORTHO05D006727 2.2e-35 154.5 113 64.6
Lsat_1_v5_gn_2_107941 Lactuca sativa HOM05D002474 ORTHO05D005260 6.5e-32 142.9 236 38.1
Sp7g01810 Schrenkiella parvula HOM05D002474 ORTHO05D006727 1.1e-31 142.1 134 56.0
SEGI_37465 Sequoiadendron giganteum HOM05D002474 ORTHO05D006727 1.9e-31 141.4 91 68.1
MBI04_g20672_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.1e-26 125.6 223 37.7
C09p60950 Brassica napus HOM05D002474 ORTHO05D006727 1.8e-26 124.8 111 56.8
MCO07G529 Micromonas commoda HOM05D002474 ORTHO05D006727 2.9e-24 117.5 441 27.2
BolC9t56457H Brassica oleracea HOM05D002474 ORTHO05D006727 2.7e-22 110.9 103 55.3
C09p36190 Brassica napus HOM05D002474 ORTHO05D006727 8.2e-19 99.4 96 54.2
MBI04_g20673_MAGBIO Magnolia biondii HOM05D002474 ORTHO05D006727 1.3e-16 92.0 77 58.4
FAN10G3970 Fragaria x ananassa HOM05D002474 ORTHO05D006727 1.7e-16 91.7 52 82.7
Rhsim10G0031800 Rhododendron simsii HOM05D002474 ORTHO05D006727 7.2e-15 86.3 47 83.0
PRCOL_00006911 Prasinoderma coloniale HOM05D002474 ORTHO05D006727 3.6e-14 84.0 476 23.3
BcaC04g18910 Brassica carinata HOM05D002474 ORTHO05D006727 4.7e-14 83.6 128 41.4
FAN10G3068 Fragaria x ananassa HOM05D002474 ORTHO05D006727 8.0e-14 82.8 47 80.9
Peaxi162Scf00036g01918 Petunia axillaris HOM05D002474 ORTHO05D006727 1.0e-13 82.4 66 56.1
Cre09.g389400 Chlamydomonas reinhardtii HOM05D002474 ORTHO05D006727 1.1e-12 79.0 269 26.0
Peaxi162Scf00781g00210 Petunia axillaris HOM05D002474 ORTHO05D006727 3.3e-12 77.4 57 57.9
vmacro05749 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 6.3e-11 73.2 40 85.0
vmacro03926 Vaccinium macrocarpon HOM05D002474 ORTHO05D006727 9.1e-10 69.3 40 80.0
Glyma.13G065601 Glycine max HOM05D002474 ORTHO05D006727 5.9e-09 66.6 79 49.4


User provided reference genes

Program Settings