Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021042 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.9e-285 984.2 512 100.0
CSS0048429 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.3e-266 921.8 511 95.7
CSS0002385 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 1.0e-208 730.3 561 72.7
Dinv37611 Davidia involucrata HOM05D003450 ORTHO05D004150 1.1e-199 700.3 561 70.1
GSVIVG01000649001 Vitis vinifera HOM05D003450 ORTHO05D004150 9.7e-196 687.2 561 68.8
CSS0024266 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 7.2e-191 671.0 588 68.5
QL02p074015 Quercus lobata HOM05D003450 ORTHO05D004150 8.0e-190 667.5 561 66.1
Potri.001G343500 Populus trichocarpa HOM05D003450 ORTHO05D004150 4.0e-189 665.2 561 66.5
Haze_14757 Corylus avellana HOM05D003450 ORTHO05D004150 3.4e-188 662.1 561 66.5
Hma1.2p1_1136F.1_g260470 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 3.4e-188 662.1 560 65.7
CiPaw.09G022500 Carya illinoinensis HOM05D003450 ORTHO05D004150 6.3e-187 657.9 561 65.6
Cfa007340 Carpinus fangiana HOM05D003450 ORTHO05D004150 8.3e-187 657.5 561 65.8
Duzib264G1290 Durio zibethinus HOM05D003450 ORTHO05D004150 1.4e-186 656.8 561 66.0
Sabra16G0222800 Salix brachista HOM05D003450 ORTHO05D004150 5.4e-186 654.8 561 66.5
Cc08_g15080 Coffea canephora HOM05D003450 ORTHO05D004150 7.2e-183 644.4 557 65.0
QL03p035003 Quercus lobata HOM05D003450 ORTHO05D004150 1.6e-182 643.3 561 64.2
Thecc.04G019300 Theobroma cacao HOM05D003450 ORTHO05D004150 1.6e-182 643.3 561 65.1
Manes.15G151800 Manihot esculenta HOM05D003450 ORTHO05D004150 6.1e-182 641.3 560 66.1
Manes.17G111200 Manihot esculenta HOM05D003450 ORTHO05D004150 2.6e-180 636.0 561 65.2
Prupe.3G293600 Prunus persica HOM05D003450 ORTHO05D004150 2.6e-180 636.0 562 65.8
Gorai.012G065100 Gossypium raimondii HOM05D003450 ORTHO05D004150 2.2e-179 632.9 562 64.4
TWI56G0323 Tripterygium wilfordii HOM05D003450 ORTHO05D004150 1.1e-178 630.6 561 64.7
Lj5C248G9 Lonicera japonica HOM05D003450 ORTHO05D004150 3.1e-178 629.0 565 63.7
Ciclev10014189m.g Citrus clementina HOM05D003450 ORTHO05D004150 4.1e-178 628.6 562 64.2
Duzib147G0628 Durio zibethinus HOM05D003450 ORTHO05D004150 7.0e-178 627.9 563 63.9
vmacro11398 Vaccinium macrocarpon HOM05D003450 ORTHO05D004150 2.0e-177 626.3 578 62.8
Gohir.A05G354700 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.7e-176 623.2 562 63.9
MD17G1022800 Malus domestica HOM05D003450 ORTHO05D004150 2.3e-176 622.9 562 64.6
Ca_04147_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 5.0e-176 621.7 562 61.4
Ca_30596_v3 Cicer arietinum L. HOM05D003450 ORTHO05D004150 5.0e-176 621.7 562 61.4
MD09G1023300 Malus domestica HOM05D003450 ORTHO05D004150 6.6e-176 621.3 562 64.2
Peaxi162Scf00074g01921 Petunia axillaris HOM05D003450 ORTHO05D004150 1.1e-175 620.5 561 64.0
TPR.G31948 Trifolium pratense HOM05D003450 ORTHO05D004150 1.9e-175 619.8 562 61.9
Psat1g053760 Pisum sativum HOM05D003450 ORTHO05D004150 2.8e-174 615.9 563 61.8
Oeu042349.1 Olea europaea HOM05D003450 ORTHO05D004150 1.4e-173 613.6 559 63.0
Lj2g0026665 Lotus japonicus HOM05D003450 ORTHO05D004150 3.0e-173 612.5 562 61.4
RcHm_v2.0_Chr2g0173241 Rosa chinensis HOM05D003450 ORTHO05D004150 4.0e-173 612.1 562 63.2
ClCG09G019370 Citrullus lanatus HOM05D003450 ORTHO05D004150 6.8e-173 611.3 560 63.2
PGR142G3144 Punica granatum HOM05D003450 ORTHO05D004150 6.8e-173 611.3 562 63.3
Medtr6g004510 Medicago truncatula HOM05D003450 ORTHO05D004150 2.6e-172 609.4 562 60.9
FAN05G3254 Fragaria x ananassa HOM05D003450 ORTHO05D004150 4.4e-172 608.6 562 63.0
MSTRG.11963 Avicennia marina HOM05D003450 ORTHO05D004150 2.9e-171 605.9 562 61.4
Nn2g10559 Nelumbo nucifera HOM05D003450 ORTHO05D004150 2.9e-171 605.9 569 61.5
CSS0005577 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 3.7e-171 605.5 545 66.1
FAN02G3092 Fragaria x ananassa HOM05D003450 ORTHO05D004150 3.7e-171 605.5 562 62.6
MELO3C021591.2 Cucumis melo HOM05D003450 ORTHO05D004150 6.4e-171 604.7 560 62.3
arahy.Tifrunner.gnm1.ann1.Q7XHAR Arachis hypogaea HOM05D003450 ORTHO05D004150 1.4e-170 603.6 557 61.4
Glyma.19G003200 Glycine max HOM05D003450 ORTHO05D004150 1.4e-170 603.6 563 61.6
arahy.Tifrunner.gnm1.ann1.F3BVF1 Arachis hypogaea HOM05D003450 ORTHO05D004150 2.4e-170 602.8 553 61.7
Eucgr.I01732 Eucalyptus grandis HOM05D003450 ORTHO05D004150 2.4e-170 602.8 563 62.0
Sed0008503 Sechium edule HOM05D003450 ORTHO05D004150 3.2e-170 602.4 560 62.7
FAN09G1073 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.2e-169 600.5 562 62.5
CANSAT64G2043 Cannabis sativa HOM05D003450 ORTHO05D004150 2.7e-169 599.4 559 61.9
FvH4_6g51710 Fragaria vesca HOM05D003450 ORTHO05D004150 2.7e-169 599.4 562 61.7
CsaV3_5G027040 Cucumis sativus L. HOM05D003450 ORTHO05D004150 4.6e-169 598.6 560 62.1
FAN14G2265 Fragaria x ananassa HOM05D003450 ORTHO05D004150 1.0e-168 597.4 562 61.7
Nitab4.5_0002282g0060 Nicotiana tabacum HOM05D003450 ORTHO05D004150 1.0e-168 597.4 550 63.6
Phvul.004G005200 Phaseolus vulgaris HOM05D003450 ORTHO05D004150 5.0e-168 595.1 563 61.3
Nitab4.5_0006540g0050 Nicotiana tabacum HOM05D003450 ORTHO05D004150 5.6e-167 591.7 588 60.0
Lalb_Chr18g0055341 Lupinus albus HOM05D003450 ORTHO05D004150 2.8e-166 589.3 565 59.8
VMungo0464G1019 Vigna mungo HOM05D003450 ORTHO05D004150 3.6e-166 589.0 563 60.4
Glyma.19G056700 Glycine max HOM05D003450 ORTHO05D004150 1.3e-163 580.5 561 58.1
Lsat_1_v5_gn_3_9121 Lactuca sativa HOM05D003450 ORTHO05D004150 2.9e-163 579.3 558 60.4
Sed0014883 Sechium edule HOM05D003450 ORTHO05D004150 4.9e-163 578.6 557 60.7
ECA246G5325 Erigeron canadensis HOM05D003450 ORTHO05D004150 4.1e-162 575.5 557 59.6
HanXRQChr17g0533281 Helianthus annuus HOM05D003450 ORTHO05D004150 1.2e-161 573.9 563 59.3
Aqoxy6G00591 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 2.7e-161 572.8 565 58.8
SGA_v2.0_scaffold76G25156 Striga asiatica HOM05D003450 ORTHO05D004150 1.0e-160 570.9 553 58.8
Lalb_Chr15g0086731 Lupinus albus HOM05D003450 ORTHO05D004150 1.9e-159 566.6 566 58.3
MBI14_g36922_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 4.3e-159 565.5 568 57.0
EL10Ac5g11313 Beta vulgaris HOM05D003450 ORTHO05D004150 5.6e-159 565.1 595 55.6
SalBow8G1100 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.1e-158 563.1 555 58.2
SalBow8G1997 Salvia bowleyana HOM05D003450 ORTHO05D004150 2.3e-157 559.7 557 58.0
CAN.G532.15 Capsicum annuum HOM05D003450 ORTHO05D004150 4.0e-157 558.9 555 60.5
AUR62009512 Chenopodium quinoa HOM05D003450 ORTHO05D004150 4.4e-156 555.4 558 56.3
AUR62034774 Chenopodium quinoa HOM05D003450 ORTHO05D004150 5.8e-156 555.1 571 55.2
Hma1.2p1_1136F.1_g260480 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 5.8e-156 555.1 487 63.9
Ah.02g116930 Amaranthus hybridus HOM05D003450 ORTHO05D004150 4.9e-155 552.0 559 57.6
Sopen08g029730 Solanum pennellii HOM05D003450 ORTHO05D004150 8.3e-155 551.2 561 59.4
Solyc08g081410.3 Solanum lycopersicum HOM05D003450 ORTHO05D004150 7.8e-153 544.7 561 58.6
ECA233G1844 Erigeron canadensis HOM05D003450 ORTHO05D004150 6.6e-152 541.6 555 56.6
Oeu059564.1 Olea europaea HOM05D003450 ORTHO05D004150 7.3e-151 538.1 462 64.5
THA.LOC104825318 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.9e-147 526.2 564 56.2
unitig_61.g26360 Utricularia gibba HOM05D003450 ORTHO05D004150 1.4e-146 523.9 555 55.1
A06p41100 Brassica napus HOM05D003450 ORTHO05D004150 2.4e-146 523.1 564 55.1
BraA06t27033Z Brassica rapa HOM05D003450 ORTHO05D004150 2.4e-146 523.1 564 55.1
Hund02491 Selenicereus undatus HOM05D003450 ORTHO05D004150 4.1e-146 522.3 564 54.1
Hund15478 Selenicereus undatus HOM05D003450 ORTHO05D004150 5.4e-146 521.9 560 56.1
Thhalv10003626m.g Eutrema salsugineum HOM05D003450 ORTHO05D004150 7.1e-146 521.5 564 55.3
BolC7t44182H Brassica oleracea HOM05D003450 ORTHO05D004150 2.1e-145 520.0 565 55.2
Sp2g16700 Schrenkiella parvula HOM05D003450 ORTHO05D004150 2.1e-145 520.0 562 55.2
THA.LOC104823952 Tarenaya hassleriana HOM05D003450 ORTHO05D004150 2.1e-145 520.0 564 56.2
C07p36640 Brassica napus HOM05D003450 ORTHO05D004150 2.7e-145 519.6 564 54.8
BcaC06g33806 Brassica carinata HOM05D003450 ORTHO05D004150 6.0e-145 518.5 564 55.3
Aa31LG2G5130 Aethionema arabicum HOM05D003450 ORTHO05D004150 7.8e-145 518.1 563 54.4
PSO421G0225 Papaver somniferum HOM05D003450 ORTHO05D004150 2.3e-144 516.5 566 54.6
PSO063G0895 Papaver somniferum HOM05D003450 ORTHO05D004150 3.0e-144 516.2 566 54.4
AT3G27530 Arabidopsis thaliana HOM05D003450 ORTHO05D004150 8.6e-144 514.6 564 55.1
BcaC03g17471 Brassica carinata HOM05D003450 ORTHO05D004150 1.9e-143 513.5 566 54.1
BcaC06g30980 Brassica carinata HOM05D003450 ORTHO05D004150 2.5e-143 513.1 564 54.3
CSS0016783 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.5e-143 513.1 369 78.3
BraA02t08553Z Brassica rapa HOM05D003450 ORTHO05D004150 9.6e-143 511.1 565 54.5
A02p35530 Brassica napus HOM05D003450 ORTHO05D004150 4.0e-141 505.8 565 54.2
DCAR_004619 Daucus carota HOM05D003450 ORTHO05D004150 1.5e-140 503.8 560 52.5
C02p54300 Brassica napus HOM05D003450 ORTHO05D004150 7.8e-137 491.5 566 52.8
BolC2t11498H Brassica oleracea HOM05D003450 ORTHO05D004150 7.8e-137 491.5 566 52.8
BcaB07g30154 Brassica carinata HOM05D003450 ORTHO05D004150 3.0e-136 489.6 553 53.5
PSO210G3071 Papaver somniferum HOM05D003450 ORTHO05D004150 1.1e-130 471.1 549 51.0
PSO210G4892 Papaver somniferum HOM05D003450 ORTHO05D004150 1.4e-130 470.7 550 51.1
PGSC0003DMG400012328 Solanum tuberosum HOM05D003450 ORTHO05D004150 2.1e-129 466.8 463 60.3
ATR0068G094 Amborella trichopoda HOM05D003450 ORTHO05D004150 3.0e-128 463.0 565 49.4
Carub.0005s0596 Capsella rubella HOM05D003450 ORTHO05D004150 3.0e-128 463.0 564 51.2
CARHR148900 Cardamine hirsuta HOM05D003450 ORTHO05D004150 3.0e-128 463.0 564 51.6
Os12g0538900 Oryza sativa ssp. japonica HOM05D003450 ORTHO05D004150 3.0e-128 463.0 557 47.2
AL5G16950 Arabidopsis lyrata HOM05D003450 ORTHO05D004150 3.9e-128 462.6 564 51.4
Zm00001eb410430 Zea mays HOM05D003450 ORTHO05D004150 6.0e-121 438.7 556 45.0
HPP92_017150 Vanilla planifolia HOM05D003450 ORTHO05D004150 1.3e-120 437.6 574 47.2
TAR623G1303 Trochodendron aralioides HOM05D003450 ORTHO05D004150 5.1e-120 435.6 370 64.9
Zm00001eb137680 Zea mays HOM05D003450 ORTHO05D004150 6.7e-120 435.3 556 45.1
HPP92_017154 Vanilla planifolia HOM05D003450 ORTHO05D004150 7.4e-119 431.8 570 47.0
Lj8A217T73 Lonicera japonica HOM05D003450 ORTHO05D004150 3.2e-114 416.4 362 63.8
Migut.E01197 Erythranthe guttata HOM05D003450 ORTHO05D004150 2.7e-113 413.3 393 59.3
Sc07g0005180 Simmondsia chinensis HOM05D003450 ORTHO05D004150 1.3e-107 394.4 377 58.6
COL.COLO4_29171 Corchorus olitorius HOM05D003450 ORTHO05D004150 9.7e-103 378.3 550 46.9
Actinidia28359 Actinidia chinensis HOM05D003450 ORTHO05D004150 1.1e-98 364.8 518 47.1
MBI14_g35409_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 1.5e-95 354.4 439 50.1
CSS0043437 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 8.2e-94 348.6 237 79.3
Hma1.2p1_1172F.1_g263680 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 2.9e-91 340.1 286 64.7
CSS0015164 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 2.6e-87 327.0 262 73.7
Solyc02g075610.4 Solanum lycopersicum HOM05D003450 ORTHO05D004150 2.4e-85 320.5 451 45.7
Gohir.D04G058450 Gossypium hirsutum HOM05D003450 ORTHO05D004150 4.5e-84 316.2 300 63.0
MBI14_g31103_MAGBIO Magnolia biondii HOM05D003450 ORTHO05D004150 4.2e-82 309.7 412 49.0
Mapoly0097s0078 Marchantia polymorpha HOM05D003450 ORTHO05D004150 1.5e-79 301.2 585 37.1
AagrBONN_evm.TU.Sc2ySwM_344.991 Anthoceros agrestis HOM05D003450 ORTHO05D004150 4.8e-78 296.2 601 37.8
Pp3c3_27420 Physcomitrium patens HOM05D003450 ORTHO05D004150 3.1e-77 293.5 571 36.4
SMO367G1196 Selaginella moellendorffii HOM05D003450 ORTHO05D004150 1.3e-75 288.1 573 37.7
Atru.chr6.2426 Acer truncatum HOM05D003450 ORTHO05D004150 1.6e-73 281.2 240 64.2
CDE02G4242 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 3.4e-71 273.5 534 36.9
Gohir.D07G231100 Gossypium hirsutum HOM05D003450 ORTHO05D004150 1.4e-69 268.1 215 66.0
Gohir.D04G058400 Gossypium hirsutum HOM05D003450 ORTHO05D004150 2.7e-68 263.8 217 65.9
Cpa.g.sc108.76 Carica papaya HOM05D003450 ORTHO05D004150 2.3e-67 260.8 219 64.4
BcaC03g17544 Brassica carinata HOM05D003450 ORTHO05D004150 4.1e-61 240.0 449 38.3
RcHm_v2.0_Chr2g0173251 Rosa chinensis HOM05D003450 ORTHO05D004150 1.1e-58 231.9 311 48.2
CAN.G293.1 Capsicum annuum HOM05D003450 ORTHO05D004150 7.3e-58 229.2 210 61.9
TAR623G1393 Trochodendron aralioides HOM05D003450 ORTHO05D004150 8.9e-56 222.2 174 68.4
CSS0010567 Camellia sinensis var. sinensis HOM05D003450 ORTHO05D004150 6.4e-54 216.1 130 89.2
FAN18G3542 Fragaria x ananassa HOM05D003450 ORTHO05D004150 2.8e-49 200.7 153 72.5
CiPaw.03G045400 Carya illinoinensis HOM05D003450 ORTHO05D004150 7.5e-47 192.6 203 53.2
Zm00001eb442080 Zea mays HOM05D003450 ORTHO05D004150 1.1e-42 178.7 172 54.7
CDE09G0700 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 1.5e-42 178.3 227 43.6
Zm00001eb191840 Zea mays HOM05D003450 ORTHO05D004150 1.9e-42 177.9 169 55.6
Zm00001eb420770 Zea mays HOM05D003450 ORTHO05D004150 3.3e-42 177.2 169 55.0
Zm00001eb068810 Zea mays HOM05D003450 ORTHO05D004150 5.6e-42 176.4 169 55.6
Zm00001eb190000 Zea mays HOM05D003450 ORTHO05D004150 5.6e-42 176.4 169 55.0
Zm00001eb162870 Zea mays HOM05D003450 ORTHO05D004150 9.5e-42 175.6 169 55.0
Zm00001eb235100 Zea mays HOM05D003450 ORTHO05D004150 3.6e-41 173.7 169 54.4
Zm00001eb170860 Zea mays HOM05D003450 ORTHO05D004150 8.1e-41 172.6 169 54.4
Sc07g0005170 Simmondsia chinensis HOM05D003450 ORTHO05D004150 5.8e-39 166.4 127 71.7
Actinidia14585 Actinidia chinensis HOM05D003450 ORTHO05D004150 3.3e-34 150.6 128 67.2
CDE09G0158 Ceratophyllum demersum HOM05D003450 ORTHO05D004150 4.7e-33 146.7 248 44.0
Atru.chr6.2427 Acer truncatum HOM05D003450 ORTHO05D004150 1.8e-32 144.8 173 53.2
TPR.G33244 Trifolium pratense HOM05D003450 ORTHO05D004150 2.8e-25 120.9 123 57.7
Atru.chr6.2428 Acer truncatum HOM05D003450 ORTHO05D004150 4.7e-25 120.2 83 74.7
C02p55220 Brassica napus HOM05D003450 ORTHO05D004150 5.2e-24 116.7 150 48.0
Zm00001eb367390 Zea mays HOM05D003450 ORTHO05D004150 5.2e-24 116.7 123 48.8
MCO05G130 Micromonas commoda HOM05D003450 ORTHO05D004150 1.5e-23 115.2 534 28.7
PRCOL_00005576 Prasinoderma coloniale HOM05D003450 ORTHO05D004150 1.7e-22 111.7 582 26.1
BolC2t11570H Brassica oleracea HOM05D003450 ORTHO05D004150 4.6e-20 103.6 147 45.6
TPR.G33285 Trifolium pratense HOM05D003450 ORTHO05D004150 1.9e-18 98.2 85 58.8
BolC2t11571H Brassica oleracea HOM05D003450 ORTHO05D004150 6.2e-17 93.2 230 35.2
Aqoxy2G03587 Aquilegia oxysepala HOM05D003450 ORTHO05D004150 3.5e-12 77.4 94 47.9
Sopen02g029170 Solanum pennellii HOM05D003450 ORTHO05D004150 1.0e-11 75.9 272 30.5
Hma1.2p1_0035F.1_g022380 Hydrangea macrophylla HOM05D003450 ORTHO05D004150 1.8e-11 75.1 83 54.2
Solyc02g084490.1 Solanum lycopersicum HOM05D003450 ORTHO05D004150 1.6e-09 68.6 72 52.8
CAN.G1274.36 Capsicum annuum HOM05D003450 ORTHO05D004150 8.1e-09 66.2 103 43.7
CBR_g57070 Chara braunii HOM05D003450 ORTHO05D004150 1.7e-06 58.5 673 20.7


User provided reference genes

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