Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021041 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.5e-254 881.7 479 100.0
CSS0021655 Camellia sinensis var. sinensis HOM05D006041 ORTHO05D007473 2.5e-254 881.7 479 100.0
Dinv26256 Davidia involucrata HOM05D006041 ORTHO05D007473 2.8e-197 692.2 479 75.8
Rhsim09G0037900 Rhododendron simsii HOM05D006041 ORTHO05D007473 3.1e-180 635.6 506 69.2
vmacro00556 Vaccinium macrocarpon HOM05D006041 ORTHO05D007473 3.4e-174 615.5 489 69.1
Haze_10912 Corylus avellana HOM05D006041 ORTHO05D007473 5.4e-172 608.2 485 68.2
Cfa015002 Carpinus fangiana HOM05D006041 ORTHO05D007473 1.7e-170 603.2 485 67.4
Haze_10913 Corylus avellana HOM05D006041 ORTHO05D007473 1.0e-167 594.0 511 64.8
Cc11_g08020 Coffea canephora HOM05D006041 ORTHO05D007473 1.5e-161 573.5 480 65.0
Cpa.g.c27573.2 Carica papaya HOM05D006041 ORTHO05D007473 3.1e-159 565.8 487 65.1
Nn4g24305 Nelumbo nucifera HOM05D006041 ORTHO05D007473 3.1e-159 565.8 480 64.4
TWI74G1002 Tripterygium wilfordii HOM05D006041 ORTHO05D007473 2.6e-158 562.8 489 64.2
Manes.15G133200 Manihot esculenta HOM05D006041 ORTHO05D007473 1.1e-156 557.4 486 63.4
COL.COLO4_16567 Corchorus olitorius HOM05D006041 ORTHO05D007473 3.2e-156 555.8 481 62.2
Oeu016281.1 Olea europaea HOM05D006041 ORTHO05D007473 5.4e-156 555.1 484 62.6
TAR629G0174 Trochodendron aralioides HOM05D006041 ORTHO05D007473 7.1e-156 554.7 477 63.3
RcHm_v2.0_Chr4g0443331 Rosa chinensis HOM05D006041 ORTHO05D007473 3.5e-155 552.4 483 63.4
CsaV3_5G028000 Cucumis sativus L. HOM05D006041 ORTHO05D007473 4.6e-155 552.0 479 62.4
Lj6A740T67 Lonicera japonica HOM05D006041 ORTHO05D007473 1.1e-153 547.4 473 62.8
Thecc.02G290600 Theobroma cacao HOM05D006041 ORTHO05D007473 1.5e-153 547.0 481 62.8
SalBow2G0340 Salvia bowleyana HOM05D006041 ORTHO05D007473 7.3e-153 544.7 478 61.5
MELO3C005281.2 Cucumis melo HOM05D006041 ORTHO05D007473 3.1e-151 539.3 479 61.2
Sabra08G0102300 Salix brachista HOM05D006041 ORTHO05D007473 4.0e-151 538.9 492 62.0
Lalb_Chr05g0222281 Lupinus albus HOM05D006041 ORTHO05D007473 6.8e-151 538.1 488 61.1
MD13G1029800 Malus domestica HOM05D006041 ORTHO05D007473 1.5e-150 537.0 496 61.1
Nitab4.5_0009602g0010 Nicotiana tabacum HOM05D006041 ORTHO05D007473 5.8e-150 535.0 477 61.6
PGR142G4228 Punica granatum HOM05D006041 ORTHO05D007473 5.8e-150 535.0 492 61.2
Migut.E00465 Erythranthe guttata HOM05D006041 ORTHO05D007473 1.7e-149 533.5 503 58.4
Nitab4.5_0000238g0060 Nicotiana tabacum HOM05D006041 ORTHO05D007473 3.7e-149 532.3 481 61.3
TAR371G0590 Trochodendron aralioides HOM05D006041 ORTHO05D007473 1.4e-148 530.4 488 61.1
Dinv18641 Davidia involucrata HOM05D006041 ORTHO05D007473 2.4e-148 529.6 423 71.9
Lsat_1_v5_gn_8_45641 Lactuca sativa HOM05D006041 ORTHO05D007473 2.4e-148 529.6 478 61.5
MBI19_g21093_MAGBIO Magnolia biondii HOM05D006041 ORTHO05D007473 2.7e-147 526.2 481 60.3
DCAR_007323 Daucus carota HOM05D006041 ORTHO05D007473 4.6e-147 525.4 497 59.2
Gorai.005G158800 Gossypium raimondii HOM05D006041 ORTHO05D007473 6.0e-147 525.0 482 61.2
Prupe.1G331600 Prunus persica HOM05D006041 ORTHO05D007473 2.3e-146 523.1 494 59.5
Duzib268G1057 Durio zibethinus HOM05D006041 ORTHO05D007473 5.1e-146 521.9 482 60.4
MD16G1020600 Malus domestica HOM05D006041 ORTHO05D007473 5.1e-146 521.9 495 59.4
Eucgr.G02114 Eucalyptus grandis HOM05D006041 ORTHO05D007473 1.1e-145 520.8 488 58.4
HanXRQChr08g0212441 Helianthus annuus HOM05D006041 ORTHO05D007473 1.1e-145 520.8 490 59.6
Duzib251G0740 Durio zibethinus HOM05D006041 ORTHO05D007473 1.5e-145 520.4 483 60.5
Ciclev10015068m.g Citrus clementina HOM05D006041 ORTHO05D007473 1.9e-145 520.0 490 58.0
Glyma.08G042900 Glycine max HOM05D006041 ORTHO05D007473 4.3e-145 518.8 478 60.3
AUR62003915 Chenopodium quinoa HOM05D006041 ORTHO05D007473 5.6e-145 518.5 493 58.8
Solyc01g005430.3 Solanum lycopersicum HOM05D006041 ORTHO05D007473 1.6e-144 516.9 481 59.7
Phvul.002G319700 Phaseolus vulgaris HOM05D006041 ORTHO05D007473 2.1e-144 516.5 484 59.3
VMungo0251G2799 Vigna mungo HOM05D006041 ORTHO05D007473 2.1e-144 516.5 483 60.5
MSTRG.2140 Avicennia marina HOM05D006041 ORTHO05D007473 3.1e-143 512.7 477 60.8
Gohir.A01G147900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 8.9e-143 511.1 478 59.6
PGSC0003DMG400032118 Solanum tuberosum HOM05D006041 ORTHO05D007473 1.2e-142 510.8 475 60.6
CANSAT01G0691 Cannabis sativa HOM05D006041 ORTHO05D007473 2.0e-142 510.0 488 61.1
Lj4g0006027 Lotus japonicus HOM05D006041 ORTHO05D007473 2.0e-142 510.0 483 59.2
EL10Ac6g15713 Beta vulgaris HOM05D006041 ORTHO05D007473 2.6e-142 509.6 513 58.1
FvH4_4g33820 Fragaria vesca HOM05D006041 ORTHO05D007473 2.6e-142 509.6 486 59.7
Sc03g0001760 Simmondsia chinensis HOM05D006041 ORTHO05D007473 3.4e-142 509.2 501 58.3
Medtr8g104930 Medicago truncatula HOM05D006041 ORTHO05D007473 4.4e-142 508.8 478 61.1
Peaxi162Scf00655g00023 Petunia axillaris HOM05D006041 ORTHO05D007473 9.9e-142 507.7 467 61.5
Sopen01g001440 Solanum pennellii HOM05D006041 ORTHO05D007473 2.2e-141 506.5 476 59.0
Atru.chr11.510 Acer truncatum HOM05D006041 ORTHO05D007473 1.9e-140 503.4 481 57.2
arahy.Tifrunner.gnm1.ann1.BAL5EB Arachis hypogaea HOM05D006041 ORTHO05D007473 4.2e-140 502.3 477 58.1
FAN17G0347 Fragaria x ananassa HOM05D006041 ORTHO05D007473 2.7e-139 499.6 489 59.1
arahy.Tifrunner.gnm1.ann1.IVEQ23 Arachis hypogaea HOM05D006041 ORTHO05D007473 6.0e-139 498.4 475 57.9
SGA_v2.0_scaffold139G35400 Striga asiatica HOM05D006041 ORTHO05D007473 1.0e-138 497.7 490 57.3
AT2G01650 Arabidopsis thaliana HOM05D006041 ORTHO05D007473 3.0e-138 496.1 483 55.7
Thhalv10004151m.g Eutrema salsugineum HOM05D006041 ORTHO05D007473 3.0e-138 496.1 497 55.5
FAN12G3784 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.0e-138 496.1 492 57.7
Carub.0005s0060 Capsella rubella HOM05D006041 ORTHO05D007473 3.9e-138 495.7 492 54.3
FAN22G1094 Fragaria x ananassa HOM05D006041 ORTHO05D007473 3.9e-138 495.7 501 57.7
Glyma.05G235400 Glycine max HOM05D006041 ORTHO05D007473 1.1e-137 494.2 479 57.4
ClCG01G006460 Citrullus lanatus HOM05D006041 ORTHO05D007473 3.3e-137 492.7 487 57.5
AL5G10750 Arabidopsis lyrata HOM05D006041 ORTHO05D007473 3.6e-136 489.2 485 54.8
CAN.G1130.10 Capsicum annuum HOM05D006041 ORTHO05D007473 3.6e-136 489.2 538 53.9
Ca_17289_v3 Cicer arietinum L. HOM05D006041 ORTHO05D007473 4.8e-136 488.8 479 56.4
Aa31LG2G8250 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.4e-135 487.3 492 55.9
THA.LOC104805081 Tarenaya hassleriana HOM05D006041 ORTHO05D007473 1.4e-135 487.3 497 56.7
Psat7g009240 Pisum sativum HOM05D006041 ORTHO05D007473 2.0e-134 483.4 479 58.0
Manes.17G082400 Manihot esculenta HOM05D006041 ORTHO05D007473 2.6e-134 483.0 485 57.7
CARHR144220 Cardamine hirsuta HOM05D006041 ORTHO05D007473 3.4e-134 482.6 492 54.3
ECA233G3443 Erigeron canadensis HOM05D006041 ORTHO05D007473 4.4e-134 482.3 473 58.1
TPR.G32714 Trifolium pratense HOM05D006041 ORTHO05D007473 9.9e-134 481.1 385 63.6
Gorai.002G173400 Gossypium raimondii HOM05D006041 ORTHO05D007473 1.7e-133 480.3 474 57.0
Gohir.D01G141100 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.8e-133 479.2 474 57.0
Ah.03g145700 Amaranthus hybridus HOM05D006041 ORTHO05D007473 1.4e-132 477.2 505 54.5
BcaC06g31287 Brassica carinata HOM05D006041 ORTHO05D007473 9.3e-132 474.6 494 53.6
Sp2g13100 Schrenkiella parvula HOM05D006041 ORTHO05D007473 1.6e-131 473.8 488 53.9
BcaC06g34139 Brassica carinata HOM05D006041 ORTHO05D007473 1.5e-129 467.2 499 53.9
C07p32270 Brassica napus HOM05D006041 ORTHO05D007473 3.3e-129 466.1 492 53.7
BolC7t43765H Brassica oleracea HOM05D006041 ORTHO05D007473 3.3e-129 466.1 499 53.7
A06p44210 Brassica napus HOM05D006041 ORTHO05D007473 9.0e-127 458.0 483 53.4
unitig_27.g25310 Utricularia gibba HOM05D006041 ORTHO05D007473 9.0e-127 458.0 478 54.8
Sed0015632 Sechium edule HOM05D006041 ORTHO05D007473 1.2e-126 457.6 381 61.7
BraA06t27296Z Brassica rapa HOM05D006041 ORTHO05D007473 5.8e-126 455.3 491 52.5
PSO478G4621 Papaver somniferum HOM05D006041 ORTHO05D007473 4.9e-125 452.2 480 52.3
ATR0753G012 Amborella trichopoda HOM05D006041 ORTHO05D007473 3.2e-124 449.5 488 54.9
QL03p034952 Quercus lobata HOM05D006041 ORTHO05D007473 1.2e-123 447.6 429 60.8
PSO017G0247 Papaver somniferum HOM05D006041 ORTHO05D007473 1.6e-123 447.2 480 51.7
CiPaw.05G190300 Carya illinoinensis HOM05D006041 ORTHO05D007473 3.4e-118 429.5 400 60.0
AUR62038228 Chenopodium quinoa HOM05D006041 ORTHO05D007473 1.0e-114 417.9 476 51.9
Potri.008G133700 Populus trichocarpa HOM05D006041 ORTHO05D007473 1.9e-113 413.7 409 58.2
CDE07G0862 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 2.9e-109 399.8 475 50.1
Gohir.D02G141500 Gossypium hirsutum HOM05D006041 ORTHO05D007473 5.0e-109 399.1 407 57.2
Gohir.A03G117900 Gossypium hirsutum HOM05D006041 ORTHO05D007473 3.0e-106 389.8 405 56.0
SGA_v2.0_scaffold151G36726 Striga asiatica HOM05D006041 ORTHO05D007473 7.2e-100 368.6 422 51.9
Hma1.2p1_0089F.1_g045430 Hydrangea macrophylla HOM05D006041 ORTHO05D007473 1.4e-98 364.4 308 64.0
Aqoxy3G00037 Aquilegia oxysepala HOM05D006041 ORTHO05D007473 8.8e-98 361.7 510 45.9
Sed0013468 Sechium edule HOM05D006041 ORTHO05D007473 8.8e-98 361.7 313 60.1
Zm00001eb099250 Zea mays HOM05D006041 ORTHO05D007473 2.9e-85 320.1 483 42.4
Actinidia34032 Actinidia chinensis HOM05D006041 ORTHO05D007473 3.0e-82 310.1 319 58.3
Zm00001eb312180 Zea mays HOM05D006041 ORTHO05D007473 6.7e-82 308.9 481 41.8
GSVIVG01011678001 Vitis vinifera HOM05D006041 ORTHO05D007473 9.7e-81 305.1 189 81.0
Oeu063578.1 Olea europaea HOM05D006041 ORTHO05D007473 8.8e-74 282.0 310 53.2
SEGI_21307 Sequoiadendron giganteum HOM05D006041 ORTHO05D007473 1.2e-73 281.6 390 44.6
SGA_v2.0_scaffold151G36757 Striga asiatica HOM05D006041 ORTHO05D007473 1.2e-70 271.6 227 66.1
CDE06G1197 Ceratophyllum demersum HOM05D006041 ORTHO05D007473 1.7e-69 267.7 475 39.8
HPP92_009644 Vanilla planifolia HOM05D006041 ORTHO05D007473 2.0e-62 244.2 243 57.2
Aa31LG3G2990 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.6e-59 234.6 228 56.6
CBR_g3474 Chara braunii HOM05D006041 ORTHO05D007473 3.4e-57 226.9 342 41.5
Os09g0401600 Oryza sativa ssp. japonica HOM05D006041 ORTHO05D007473 1.7e-56 224.6 228 53.5
Lalb_Chr16g0387681 Lupinus albus HOM05D006041 ORTHO05D007473 4.4e-49 199.9 323 42.7
Mapoly0081s0058 Marchantia polymorpha HOM05D006041 ORTHO05D007473 5.8e-49 199.5 321 37.7
SGA_v2.0_scaffold151G36758 Striga asiatica HOM05D006041 ORTHO05D007473 2.0e-46 191.0 241 46.9
Aa31sc215G20 Aethionema arabicum HOM05D006041 ORTHO05D007473 1.1e-39 168.7 151 59.6
arahy.Tifrunner.gnm1.ann1.I8TFGP Arachis hypogaea HOM05D006041 ORTHO05D007473 9.2e-39 165.6 154 54.5
Actinidia25876 Actinidia chinensis HOM05D001822 ORTHO05D001744 1.3e-37 161.8 111 74.8
QL10p059701 Quercus lobata HOM05D006041 ORTHO05D007473 4.1e-31 140.2 114 59.6
Psat7g181280 Pisum sativum HOM05D006041 ORTHO05D007473 1.8e-26 124.8 136 49.3
CAN.G3.6 Capsicum annuum HOM05D006041 ORTHO05D007473 3.1e-26 124.0 185 41.6
SMO276G0024 Selaginella moellendorffii HOM05D006041 ORTHO05D007473 2.5e-20 104.4 94 54.3
MCO04G546 Micromonas commoda HOM05D006041 ORTHO05D007473 1.6e-19 101.7 266 28.6
Actinidia34031 Actinidia chinensis HOM05D006041 ORTHO05D007473 1.4e-18 98.6 74 67.6
Cre02.g116650 Chlamydomonas reinhardtii HOM05D034198 ORTHO05D034480 1.9e-07 61.6 92 33.7
Ciclev10016175m.g Citrus clementina HOM05D004631 ORTHO05D005223 4.2e-07 60.5 118 32.2
Ah.11g049900 Amaranthus hybridus HOM05D000470 ORTHO05D000348 5.5e-07 60.1 157 29.9
BcaC02g09488 Brassica carinata HOM05D006530 ORTHO05D008283 9.3e-07 59.3 79 38.0
Thecc.04G027600 Theobroma cacao HOM05D004631 ORTHO05D005223 9.3e-07 59.3 166 29.5
Aqoxy5G03556 Aquilegia oxysepala HOM05D004631 ORTHO05D005223 1.2e-06 58.9 115 35.7
RcHm_v2.0_Chr2g0174181 Rosa chinensis HOM05D004631 ORTHO05D005223 1.2e-06 58.9 118 31.4
CANSAT64G0886 Cannabis sativa HOM05D004631 ORTHO05D005223 2.1e-06 58.2 119 31.9
Duzib147G1024 Durio zibethinus HOM05D004631 ORTHO05D005223 2.7e-06 57.8 130 30.0
MD17G1018100 Malus domestica HOM05D004631 ORTHO05D005223 2.7e-06 57.8 112 33.0
Manes.15G156400 Manihot esculenta HOM05D004631 ORTHO05D005223 2.7e-06 57.8 130 33.1
Aa31sc37G10 Aethionema arabicum HOM05D002747 ORTHO05D003069 3.5e-06 57.4 55 45.5
Eucgr.I01692 Eucalyptus grandis HOM05D004631 ORTHO05D005223 3.5e-06 57.4 153 28.8
MD09G1017300 Malus domestica HOM05D004631 ORTHO05D005223 4.6e-06 57.0 117 31.6
A04p09880 Brassica napus HOM05D006530 ORTHO05D008283 6.0e-06 56.6 79 36.7
BraA04t16650Z Brassica rapa HOM05D006530 ORTHO05D008283 6.0e-06 56.6 79 36.7
MSTRG.24067 Avicennia marina HOM05D004631 ORTHO05D005223 7.9e-06 56.2 156 28.8
BcaC06g33833 Brassica carinata HOM05D004631 ORTHO05D005223 7.9e-06 56.2 194 28.4
BolC7t44152H Brassica oleracea HOM05D004631 ORTHO05D005223 7.9e-06 56.2 194 28.4
Migut.H00060 Erythranthe guttata HOM05D004631 ORTHO05D005223 7.9e-06 56.2 118 30.5
RhsimUnG0241300 Rhododendron simsii HOM05D004631 ORTHO05D005223 7.9e-06 56.2 116 32.8


User provided reference genes

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