Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021038 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 1.4e-142 509.6 252 100.0
Dinv15765 Davidia involucrata HOM05D005496 ORTHO05D006677 1.2e-130 469.9 252 90.1
CSS0023946 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.1e-130 469.2 249 91.2
CSS0028960 Camellia sinensis var. sinensis HOM05D005496 ORTHO05D006677 2.1e-130 469.2 249 91.2
Actinidia17481 Actinidia chinensis HOM05D005496 ORTHO05D006677 2.3e-129 465.7 252 88.1
Dinv42193 Davidia involucrata HOM05D005496 ORTHO05D006677 2.3e-129 465.7 252 88.9
TAR376G0359 Trochodendron aralioides HOM05D005496 ORTHO05D006677 1.4e-126 456.4 248 88.3
Cpa.g.sc106.90 Carica papaya HOM05D005496 ORTHO05D006677 1.8e-126 456.1 253 87.7
Thecc.02G107900 Theobroma cacao HOM05D005496 ORTHO05D006677 2.3e-126 455.7 253 88.1
Actinidia27972 Actinidia chinensis HOM05D005496 ORTHO05D006677 4.0e-126 454.9 279 81.4
DCAR_021987 Daucus carota HOM05D005496 ORTHO05D006677 5.2e-126 454.5 253 87.7
Gohir.A12G022100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 8.9e-126 453.8 253 87.4
Gohir.D12G022500 Gossypium hirsutum HOM05D005496 ORTHO05D006677 1.2e-125 453.4 253 87.4
TAR628G1491 Trochodendron aralioides HOM05D005496 ORTHO05D006677 3.4e-125 451.8 248 87.1
Aqoxy6G02861 Aquilegia oxysepala HOM05D005496 ORTHO05D006677 9.9e-125 450.3 248 87.1
Atru.chr5.2543 Acer truncatum HOM05D005496 ORTHO05D006677 1.7e-124 449.5 254 85.8
Atru.chr5.2566 Acer truncatum HOM05D005496 ORTHO05D006677 1.7e-124 449.5 254 85.8
CANSAT25G1824 Cannabis sativa HOM05D005496 ORTHO05D006677 2.9e-124 448.7 255 85.1
CANSAT25G2648 Cannabis sativa HOM05D005496 ORTHO05D006677 2.9e-124 448.7 255 85.1
CiPaw.06G169300 Carya illinoinensis HOM05D005496 ORTHO05D006677 6.4e-124 447.6 254 85.4
Sc18g0005590 Simmondsia chinensis HOM05D005496 ORTHO05D006677 6.4e-124 447.6 254 85.0
MD05G1089700 Malus domestica HOM05D005496 ORTHO05D006677 8.3e-124 447.2 252 85.7
Prupe.8G135000 Prunus persica HOM05D005496 ORTHO05D006677 2.4e-123 445.7 252 84.5
Manes.07G069764 Manihot esculenta HOM05D005496 ORTHO05D006677 9.2e-123 443.7 253 85.8
Solyc01g107600.3 Solanum lycopersicum HOM05D005496 ORTHO05D006677 9.2e-123 443.7 254 85.0
TWI75G0729 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 1.2e-122 443.4 253 85.0
GSVIVG01003155001 Vitis vinifera HOM05D005496 ORTHO05D006677 1.2e-122 443.4 256 84.8
CiPaw.05G011600 Carya illinoinensis HOM05D005496 ORTHO05D006677 1.6e-122 443.0 254 85.4
Potri.009G095900 Populus trichocarpa HOM05D005496 ORTHO05D006677 3.5e-122 441.8 255 84.3
PGSC0003DMG402025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 4.6e-122 441.4 254 84.6
Sopen01g049790 Solanum pennellii HOM05D005496 ORTHO05D006677 6.0e-122 441.0 254 84.3
FvH4_2g05170 Fragaria vesca HOM05D005496 ORTHO05D006677 7.8e-122 440.7 254 84.3
TWI79G0817 Tripterygium wilfordii HOM05D005496 ORTHO05D006677 7.8e-122 440.7 253 84.6
Rhsim11G0160100 Rhododendron simsii HOM05D005496 ORTHO05D006677 1.0e-121 440.3 294 77.6
RcHm_v2.0_Chr6g0255081 Rosa chinensis HOM05D005496 ORTHO05D006677 1.0e-121 440.3 254 83.9
PSO675G7162 Papaver somniferum HOM05D005496 ORTHO05D006677 2.3e-121 439.1 248 84.7
MD10G1096900 Malus domestica HOM05D005496 ORTHO05D006677 6.6e-121 437.6 252 83.7
THA.LOC104807241 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 6.6e-121 437.6 253 82.6
PSO541G0750 Papaver somniferum HOM05D005496 ORTHO05D006677 1.1e-120 436.8 248 85.1
Cc02_g19260 Coffea canephora HOM05D005496 ORTHO05D006677 1.5e-120 436.4 261 81.6
Migut.N01167 Erythranthe guttata HOM05D005496 ORTHO05D006677 1.5e-120 436.4 254 82.7
PGR142G1113 Punica granatum HOM05D005496 ORTHO05D006677 7.3e-120 434.1 253 83.0
Carub.0003s2908 Capsella rubella HOM05D005496 ORTHO05D006677 9.5e-120 433.7 253 81.8
Thhalv10022824m.g Eutrema salsugineum HOM05D005496 ORTHO05D006677 9.5e-120 433.7 253 82.2
Gohir.D01G008100 Gossypium hirsutum HOM05D005496 ORTHO05D006677 2.1e-119 432.6 253 83.4
BcaB07g31795 Brassica carinata HOM05D005496 ORTHO05D006677 2.8e-119 432.2 253 82.2
Eucgr.E02959 Eucalyptus grandis HOM05D005496 ORTHO05D006677 2.8e-119 432.2 253 83.4
Potri.001G300100 Populus trichocarpa HOM05D005496 ORTHO05D006677 3.6e-119 431.8 255 83.1
MSTRG.5341 Avicennia marina HOM05D005496 ORTHO05D006677 4.7e-119 431.4 250 82.8
MELO3C018493.2 Cucumis melo HOM05D005496 ORTHO05D006677 6.2e-119 431.0 253 81.0
AT2G15240 Arabidopsis thaliana HOM05D005496 ORTHO05D006677 8.1e-119 430.6 253 81.4
CsaV3_7G008130 Cucumis sativus L. HOM05D005496 ORTHO05D006677 8.1e-119 430.6 253 81.4
BolC9t54157H Brassica oleracea HOM05D005496 ORTHO05D006677 1.1e-118 430.3 252 82.1
FAN27G2869 Fragaria x ananassa HOM05D005496 ORTHO05D006677 1.1e-118 430.3 275 78.5
Sed0023992 Sechium edule HOM05D005496 ORTHO05D006677 1.1e-118 430.3 253 80.2
Glyma.20G128700 Glycine max HOM05D005496 ORTHO05D006677 1.4e-118 429.9 259 81.1
AL3G46950 Arabidopsis lyrata HOM05D005496 ORTHO05D006677 1.8e-118 429.5 253 81.0
Phvul.007G039900 Phaseolus vulgaris HOM05D005496 ORTHO05D006677 1.8e-118 429.5 256 82.0
ClCG02G006320 Citrullus lanatus HOM05D005496 ORTHO05D006677 2.4e-118 429.1 253 80.6
Lj5g0001757 Lotus japonicus HOM05D005496 ORTHO05D006677 4.0e-118 428.3 253 81.4
Sp3g28490 Schrenkiella parvula HOM05D005496 ORTHO05D006677 4.0e-118 428.3 253 81.4
MSTRG.27744 Avicennia marina HOM05D005496 ORTHO05D006677 5.2e-118 427.9 254 81.1
C07p08630 Brassica napus HOM05D005496 ORTHO05D006677 5.2e-118 427.9 253 81.4
Glyma.10G262300 Glycine max HOM05D005496 ORTHO05D006677 6.8e-118 427.6 256 81.6
TPR.G30567 Trifolium pratense HOM05D005496 ORTHO05D006677 6.8e-118 427.6 257 81.3
Ca_11075_v3 Cicer arietinum L. HOM05D005496 ORTHO05D006677 1.2e-117 426.8 257 80.5
Lalb_Chr06g0165461 Lupinus albus HOM05D005496 ORTHO05D006677 1.2e-117 426.8 253 81.8
Lalb_Chr21g0308341 Lupinus albus HOM05D005496 ORTHO05D006677 1.2e-117 426.8 259 81.5
HanXRQChr16g0509221 Helianthus annuus HOM05D005496 ORTHO05D006677 1.5e-117 426.4 249 81.9
Peaxi162Scf00016g02325 Petunia axillaris HOM05D005496 ORTHO05D006677 2.0e-117 426.0 280 75.7
THA.LOC104819553 Tarenaya hassleriana HOM05D005496 ORTHO05D006677 2.0e-117 426.0 253 80.6
Medtr1g107430 Medicago truncatula HOM05D005496 ORTHO05D006677 2.6e-117 425.6 258 80.2
BraA07t28330Z Brassica rapa HOM05D005496 ORTHO05D006677 3.4e-117 425.2 256 80.5
A07p05380 Brassica napus HOM05D005496 ORTHO05D006677 9.9e-117 423.7 255 80.8
Gorai.002G009400 Gossypium raimondii HOM05D005496 ORTHO05D006677 2.2e-116 422.5 253 82.2
Sed0010088 Sechium edule HOM05D005496 ORTHO05D006677 6.4e-116 421.0 254 78.7
BolC7t41274H Brassica oleracea HOM05D005496 ORTHO05D006677 1.1e-115 420.2 238 83.6
ATR0691G184 Amborella trichopoda HOM05D005496 ORTHO05D006677 2.4e-115 419.1 247 78.1
ECA236G0884 Erigeron canadensis HOM05D005496 ORTHO05D006677 2.4e-115 419.1 249 81.1
HanXRQChr10g0292361 Helianthus annuus HOM05D005496 ORTHO05D006677 1.6e-114 416.4 249 80.3
arahy.Tifrunner.gnm1.ann1.7NM92S Arachis hypogaea HOM05D005496 ORTHO05D006677 5.6e-112 407.9 256 79.7
CARHR105630 Cardamine hirsuta HOM05D005496 ORTHO05D006677 3.6e-111 405.2 225 84.0
arahy.Tifrunner.gnm1.ann1.CE7Z9D Arachis hypogaea HOM05D005496 ORTHO05D006677 8.1e-111 404.1 256 78.5
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 4.0e-110 401.7 226 84.1
FAN15G3658 Fragaria x ananassa HOM05D005496 ORTHO05D006677 2.0e-109 399.4 252 79.4
Nn5g30423 Nelumbo nucifera HOM05D005496 ORTHO05D006677 1.9e-107 392.9 248 77.0
A09p10680 Brassica napus HOM05D005496 ORTHO05D006677 4.2e-107 391.7 231 81.4
C09p12670 Brassica napus HOM05D005496 ORTHO05D006677 4.2e-107 391.7 231 81.4
Os09g0109500 Oryza sativa ssp. japonica HOM05D005496 ORTHO05D006677 2.5e-104 382.5 248 77.0
Lsat_1_v5_gn_7_86500 Lactuca sativa HOM05D005496 ORTHO05D006677 7.3e-104 380.9 222 82.0
BraA09t36711Z Brassica rapa HOM05D005496 ORTHO05D006677 3.6e-103 378.6 254 74.0
Duzib052G0798 Durio zibethinus HOM05D005496 ORTHO05D006677 6.2e-103 377.9 253 76.3
Pp3c22_1600 Physcomitrium patens HOM05D005496 ORTHO05D006677 5.3e-102 374.8 249 72.7
QL11p033686 Quercus lobata HOM05D005496 ORTHO05D006677 2.6e-101 372.5 452 48.5
FAN24G2091 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.5e-101 371.7 254 74.4
Mapoly0001s0126 Marchantia polymorpha HOM05D005496 ORTHO05D006677 2.9e-100 369.0 248 71.0
Ciclev10029109m.g Citrus clementina HOM05D005496 ORTHO05D006677 4.2e-99 365.2 208 83.7
Gorai.008G022900 Gossypium raimondii HOM05D005496 ORTHO05D006677 9.3e-99 364.0 248 76.6
Aa31LG8G13100 Aethionema arabicum HOM05D005496 ORTHO05D006677 1.6e-98 363.2 255 72.9
Pp3c21_16720 Physcomitrium patens HOM05D005496 ORTHO05D006677 3.5e-98 362.1 249 69.9
Sabra16G0188400 Salix brachista HOM05D005496 ORTHO05D006677 5.1e-97 358.2 283 67.1
Gohir.A01G008000 Gossypium hirsutum HOM05D005496 ORTHO05D006677 9.6e-96 354.0 257 73.5
Psat6g219080 Pisum sativum HOM05D005496 ORTHO05D006677 6.2e-95 351.3 211 80.6
AagrBONN_evm.TU.Sc2ySwM_228.4354 Anthoceros agrestis HOM05D005496 ORTHO05D006677 1.4e-94 350.1 235 70.6
Actinidia00410 Actinidia chinensis HOM05D005496 ORTHO05D006677 1.5e-93 346.7 240 72.5
Hund00151 Selenicereus undatus HOM05D005496 ORTHO05D006677 3.8e-92 342.0 194 85.6
unitig_699.g19872 Utricularia gibba HOM05D005496 ORTHO05D006677 1.1e-91 340.5 207 77.8
SMO358G0568 Selaginella moellendorffii HOM05D005496 ORTHO05D006677 3.2e-91 339.0 250 66.4
Zm00001eb307360 Zea mays HOM05D005496 ORTHO05D006677 2.7e-90 335.9 248 70.6
BcaB03g16270 Brassica carinata HOM05D005496 ORTHO05D006677 2.3e-89 332.8 250 66.8
BcaC06g36040 Brassica carinata HOM05D005496 ORTHO05D006677 1.5e-88 330.1 199 78.9
Duzib132G0296 Durio zibethinus HOM05D005496 ORTHO05D006677 2.1e-87 326.2 253 68.0
AUR62039077 Chenopodium quinoa HOM05D005496 ORTHO05D006677 4.8e-87 325.1 268 65.3
CDE02G0272 Ceratophyllum demersum HOM05D005496 ORTHO05D006677 5.3e-86 321.6 248 63.3
vmacro02003 Vaccinium macrocarpon HOM05D005496 ORTHO05D006677 4.2e-83 312.0 336 56.8
Actinidia05496 Actinidia chinensis HOM05D005496 ORTHO05D006677 5.5e-83 311.6 282 61.0
Lj5C214T6 Lonicera japonica HOM05D005496 ORTHO05D006677 3.5e-82 308.9 206 76.7
PGSC0003DMG401025863 Solanum tuberosum HOM05D005496 ORTHO05D006677 1.0e-76 290.8 210 71.4
Nitab4.5_0002815g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 3.8e-76 288.9 252 62.7
EL10Ac9g22275 Beta vulgaris HOM05D005496 ORTHO05D006677 8.5e-76 287.7 161 85.1
AUR62010309 Chenopodium quinoa HOM05D005496 ORTHO05D006677 2.7e-74 282.7 207 68.6
SGA_v2.0_scaffold13G06610 Striga asiatica HOM05D005496 ORTHO05D006677 3.7e-71 272.3 161 81.4
Cre06.g250350 Chlamydomonas reinhardtii HOM05D005496 ORTHO05D006677 1.4e-70 270.4 225 53.8
MCO15G042 Micromonas commoda HOM05D005496 ORTHO05D006677 1.2e-66 257.3 228 52.2
Sabra09G0073700 Salix brachista HOM05D005496 ORTHO05D006677 1.2e-66 257.3 286 52.1
Oeu056146.1 Olea europaea HOM05D005496 ORTHO05D006677 3.6e-66 255.8 170 74.1
PRCOL_00006227 Prasinoderma coloniale HOM05D005496 ORTHO05D006677 1.5e-64 250.4 230 54.8
FAN20G2824 Fragaria x ananassa HOM05D005496 ORTHO05D006677 4.1e-62 242.3 146 84.2
HPP92_011625 Vanilla planifolia HOM05D005496 ORTHO05D006677 5.5e-59 231.9 145 72.4
Ah.01g018260 Amaranthus hybridus HOM05D005496 ORTHO05D006677 1.6e-58 230.3 175 66.9
SalBow3G0726 Salvia bowleyana HOM05D005496 ORTHO05D006677 2.1e-58 229.9 206 58.7
SEGI_40705 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 3.1e-46 189.5 112 80.4
BolC7t41273H Brassica oleracea HOM05D005496 ORTHO05D006677 5.5e-43 178.7 114 76.3
Haze_10172 Corylus avellana HOM05D005496 ORTHO05D006677 2.7e-42 176.4 133 71.4
SEGI_21612 Sequoiadendron giganteum HOM05D005496 ORTHO05D006677 1.0e-36 157.9 91 76.9
CBR_g4069 Chara braunii HOM05D005496 ORTHO05D006677 3.8e-36 156.0 92 76.1
COL.COLO4_32594 Corchorus olitorius HOM05D005496 ORTHO05D006677 6.8e-33 145.2 174 48.3
Nitab4.5_0005392g0040 Nicotiana tabacum HOM05D005496 ORTHO05D006677 6.8e-33 145.2 252 41.3
CBR_g4071 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-29 133.7 94 71.3
HPP92_026155 Vanilla planifolia HOM05D005496 ORTHO05D006677 4.0e-17 92.8 51 80.4


User provided reference genes

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