Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 0.0e+00 1275.0 595 100.0
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1114.0 661 80.3
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1110.9 637 81.5
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1098.6 612 83.2
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1075.5 627 80.1
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 8.1e-312 1072.8 635 80.0
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 3.1e-310 1067.8 636 77.5
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 3.1e-310 1067.8 630 78.4
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 4.4e-309 1063.9 623 79.1
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 1.1e-307 1059.3 631 78.1
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 3.2e-307 1057.7 601 81.9
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 4.2e-307 1057.4 627 78.8
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 2.1e-306 1055.0 622 78.1
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 2.7e-306 1054.7 625 78.1
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 1.1e-304 1049.3 632 77.2
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 2.5e-304 1048.1 634 77.4
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 3.3e-304 1047.7 624 77.6
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 5.6e-304 1047.0 636 76.9
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 7.3e-304 1046.6 601 78.7
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 7.3e-304 1046.6 623 77.5
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 2.1e-303 1045.0 632 77.8
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 8.1e-303 1043.1 632 77.7
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 1.4e-302 1042.3 623 77.4
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 5.3e-302 1040.4 623 77.0
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 6.9e-302 1040.0 626 76.0
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 9.0e-302 1039.6 627 77.0
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 9.0e-302 1039.6 611 79.1
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 9.0e-302 1039.6 630 76.0
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 9.0e-302 1039.6 632 76.9
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 1.5e-301 1038.9 625 77.0
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 1.5e-301 1038.9 638 75.2
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 1.5e-301 1038.9 643 75.9
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 3.4e-301 1037.7 621 77.3
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 9.9e-301 1036.2 623 76.7
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 1.3e-300 1035.8 647 75.4
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 4.9e-300 1033.9 627 77.2
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 6.4e-300 1033.5 627 77.4
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 4.2e-299 1030.8 625 76.0
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 4.2e-299 1030.8 848 61.7
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 9.3e-299 1029.6 627 76.4
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 1.2e-298 1029.2 644 75.2
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 4.6e-298 1027.3 625 76.0
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 6.0e-298 1026.9 629 76.5
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 1.8e-297 1025.4 601 77.4
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 6.7e-297 1023.5 626 75.2
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 1.5e-296 1022.3 635 75.9
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 7.4e-296 1020.0 634 75.4
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 2.8e-295 1018.1 633 75.7
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 6.2e-295 1016.9 638 74.9
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.3e-292 1009.2 638 73.8
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 2.9e-292 1008.1 636 73.3
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 5.5e-291 1003.8 596 78.0
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 7.1e-291 1003.4 636 73.3
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.6e-290 1000.7 638 73.5
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 2.3e-289 998.4 612 76.3
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 5.1e-289 997.3 609 76.2
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 8.7e-289 996.5 596 77.0
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.1e-288 996.1 635 74.0
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 1.1e-288 996.1 650 70.9
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 5.6e-288 993.8 603 75.5
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 5.6e-288 993.8 602 75.2
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 2.1e-287 991.9 602 75.1
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 2.8e-287 991.5 595 77.3
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 3.7e-287 991.1 603 75.1
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 3.7e-287 991.1 684 69.0
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 1.4e-286 989.2 602 74.9
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 1.4e-286 989.2 602 74.9
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 1.8e-286 988.8 602 74.9
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 2.4e-286 988.4 632 72.5
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 5.3e-286 987.3 771 63.0
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 9.0e-286 986.5 602 75.7
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 1.2e-285 986.1 595 75.5
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 3.4e-285 984.6 601 75.4
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 7.6e-285 983.4 630 72.2
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 2.9e-284 981.5 602 75.4
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 8.4e-284 979.9 602 75.2
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 5.5e-283 977.2 635 72.1
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 9.3e-283 976.5 630 71.9
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.5e-280 969.1 625 72.3
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 3.3e-280 968.0 546 82.6
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.6e-279 965.7 631 73.2
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 4.8e-279 964.1 549 81.2
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 1.4e-278 962.6 630 70.6
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 4.1e-278 961.1 537 82.1
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 5.0e-276 954.1 742 62.5
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 4.6e-274 947.6 541 81.5
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 3.3e-272 941.4 566 77.7
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 9.1e-270 933.3 524 81.9
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 4.5e-269 931.0 556 76.8
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 5.1e-265 917.5 632 69.8
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 2.6e-256 888.6 565 72.0
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 1.7e-255 885.9 548 75.5
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.5e-251 872.8 606 68.5
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 2.1e-250 869.0 571 71.8
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 8.8e-249 863.6 549 72.9
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 5.7e-248 860.9 629 66.8
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 9.1e-246 853.6 639 65.4
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 3.0e-241 838.6 609 67.7
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.8e-233 812.8 491 76.6
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 3.2e-230 802.0 605 61.8
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 2.1e-226 789.3 628 59.1
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 4.0e-225 785.0 609 63.7
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 1.2e-213 746.9 425 81.9
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.5e-213 745.3 602 57.5
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 3.5e-205 718.8 630 54.6
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 8.1e-202 707.6 413 77.7
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 5.8e-200 701.4 557 60.0
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 3.6e-194 682.2 464 70.3
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 8.4e-183 644.4 448 69.2
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 5.6e-179 631.7 346 84.7
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 8.4e-167 591.3 381 71.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 8.9e-116 421.8 264 77.7
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 3.9e-111 406.4 427 52.0
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 2.1e-109 400.6 246 74.0
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 3.0e-79 300.4 170 84.1
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 6.4e-74 282.7 178 75.3
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.4e-65 254.2 132 87.1
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 7.1e-65 252.7 202 60.9
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 7.4e-62 242.7 188 61.7
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.3e-54 216.9 160 61.9
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 2.2e-50 204.5 155 62.6
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 7.9e-48 196.1 339 36.0
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 1.9e-46 191.4 105 83.8
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 5.0e-42 176.8 115 70.4
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.4e-41 175.3 83 90.4
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 2.6e-35 154.5 122 60.7
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.9e-35 153.3 130 63.1
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 7.7e-35 152.9 103 74.8
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 2.4e-28 131.3 211 36.0
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 4.1e-28 130.6 66 87.9
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.4e-25 119.4 78 74.4
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.7e-24 117.1 56 94.6
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 4.7e-24 117.1 56 94.6
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.3e-23 114.8 78 71.8
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.2e-23 113.6 62 83.9
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 5.2e-23 113.6 62 83.9
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 8.8e-23 112.8 82 70.7
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 3.3e-22 110.9 306 26.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 4.4e-22 110.5 79 68.4
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 1.7e-21 108.6 51 90.2
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 2.2e-21 108.2 79 68.4
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.3e-21 106.7 73 72.6
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 6.3e-21 106.7 73 72.6
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 9.1e-20 102.8 205 29.3
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 7.7e-19 99.8 211 26.5
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.5e-17 93.6 138 40.6
Gohir.A08G245800 Gossypium hirsutum HOM05D001762 ORTHO05D001774 5.2e-15 87.0 237 28.7
Gohir.D08G266800 Gossypium hirsutum HOM05D001762 ORTHO05D001774 5.2e-15 87.0 237 28.7
Gorai.004G284600 Gossypium raimondii HOM05D001762 ORTHO05D001774 8.8e-15 86.3 237 28.7
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 1.2e-14 85.9 65 64.6
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 2.2e-10 71.6 32 84.4
CSS0023541 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.4e-07 62.4 295 24.1
CSS0008179 Camellia sinensis var. sinensis HOM05D006117 ORTHO05D007996 1.8e-07 62.0 295 24.1
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 8.8e-07 59.7 71 49.3


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