Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021022 Camellia sinensis var. sinensis HOM05D005370 ORTHO05D006659 2.5e-119 432.2 228 100.0
Cc01_g08030 Coffea canephora HOM05D005370 ORTHO05D006659 5.1e-80 301.6 230 72.6
Lsat_1_v5_gn_8_94841 Lactuca sativa HOM05D005370 ORTHO05D006659 4.3e-79 298.5 227 70.5
Actinidia27521 Actinidia chinensis HOM05D005370 ORTHO05D006659 7.4e-79 297.7 235 72.3
Nn3g19501 Nelumbo nucifera HOM05D005370 ORTHO05D006659 2.5e-74 282.7 233 66.5
ECA236G0510 Erigeron canadensis HOM05D005370 ORTHO05D006659 3.2e-74 282.3 229 67.7
TWI18G0973 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 5.5e-74 281.6 229 68.1
HanXRQChr02g0032381 Helianthus annuus HOM05D005370 ORTHO05D006659 2.1e-73 279.6 236 68.2
Peaxi162Scf00434g00622 Petunia axillaris HOM05D005370 ORTHO05D006659 7.9e-73 277.7 244 66.4
Migut.D00369 Erythranthe guttata HOM05D005370 ORTHO05D006659 3.0e-72 275.8 233 65.7
Sabra02G0036500 Salix brachista HOM05D005370 ORTHO05D006659 3.0e-72 275.8 246 64.6
Manes.01G202000 Manihot esculenta HOM05D005370 ORTHO05D006659 3.9e-72 275.4 240 64.2
Dinv22486 Davidia involucrata HOM05D005370 ORTHO05D006659 5.1e-72 275.0 200 73.0
TWI12G0023 Tripterygium wilfordii HOM05D005370 ORTHO05D006659 6.7e-72 274.6 229 66.4
Potri.002G045500 Populus trichocarpa HOM05D005370 ORTHO05D006659 2.5e-71 272.7 244 63.1
CiPaw.02G117200 Carya illinoinensis HOM05D005370 ORTHO05D006659 7.4e-71 271.2 227 65.6
Prupe.1G175900 Prunus persica HOM05D005370 ORTHO05D006659 1.3e-70 270.4 228 64.0
Sopen04g034560 Solanum pennellii HOM05D005370 ORTHO05D006659 1.7e-70 270.0 258 60.9
CAN.G851.23 Capsicum annuum HOM05D005370 ORTHO05D006659 1.1e-69 267.3 257 59.5
Ciclev10006717m.g Citrus clementina HOM05D005370 ORTHO05D006659 1.1e-69 267.3 229 63.8
SalBow4G0733 Salvia bowleyana HOM05D005370 ORTHO05D006659 1.8e-69 266.5 235 61.7
Solyc04g080950.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 1.8e-69 266.5 255 60.4
GSVIVG01018102001 Vitis vinifera HOM05D005370 ORTHO05D006659 5.3e-69 265.0 227 65.2
QL06p015215 Quercus lobata HOM05D005370 ORTHO05D006659 9.1e-69 264.2 228 63.6
AUR62032263 Chenopodium quinoa HOM05D005370 ORTHO05D006659 4.5e-68 261.9 252 59.9
Ca_14753_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 7.7e-68 261.2 224 63.8
EL10Ac5g10469 Beta vulgaris HOM05D005370 ORTHO05D006659 1.0e-67 260.8 252 58.3
COL.COLO4_15774 Corchorus olitorius HOM05D005370 ORTHO05D006659 1.0e-67 260.8 227 62.6
MBI15_g19756_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.3e-67 260.4 225 63.6
Aqoxy3G04193 Aquilegia oxysepala HOM05D005370 ORTHO05D006659 2.2e-67 259.6 231 62.3
DCAR_023471 Daucus carota HOM05D005370 ORTHO05D006659 2.2e-67 259.6 241 61.4
DCAR_028371 Daucus carota HOM05D005370 ORTHO05D006659 2.2e-67 259.6 241 61.8
MELO3C005475.2 Cucumis melo HOM05D005370 ORTHO05D006659 2.9e-67 259.2 240 61.2
Ca_24537_v3 Cicer arietinum L. HOM05D005370 ORTHO05D006659 5.0e-67 258.5 224 62.9
CsaV3_5G004690 Cucumis sativus L. HOM05D005370 ORTHO05D006659 8.5e-67 257.7 237 60.8
AUR62011949 Chenopodium quinoa HOM05D005370 ORTHO05D006659 1.1e-66 257.3 252 58.3
Lj5g0014373 Lotus japonicus HOM05D005370 ORTHO05D006659 2.5e-66 256.1 226 63.7
Cfa018256 Carpinus fangiana HOM05D005370 ORTHO05D006659 3.2e-66 255.8 246 58.9
RcHm_v2.0_Chr4g0389631 Rosa chinensis HOM05D005370 ORTHO05D006659 3.2e-66 255.8 229 60.7
FAN22G1699 Fragaria x ananassa HOM05D005370 ORTHO05D006659 5.5e-66 255.0 229 59.8
PGSC0003DMG400003760 Solanum tuberosum HOM05D005370 ORTHO05D006659 7.2e-66 254.6 246 61.0
Phvul.007G177000 Phaseolus vulgaris HOM05D005370 ORTHO05D006659 9.4e-66 254.2 230 62.2
FAN17G2982 Fragaria x ananassa HOM05D005370 ORTHO05D006659 2.1e-65 253.1 229 59.8
Sed0023556 Sechium edule HOM05D005370 ORTHO05D006659 7.9e-65 251.1 237 60.3
CANSAT11G0223 Cannabis sativa HOM05D005370 ORTHO05D006659 1.0e-64 250.8 228 63.6
Ah.11g050020 Amaranthus hybridus HOM05D005370 ORTHO05D006659 1.4e-64 250.4 252 57.9
TAR362G0430 Trochodendron aralioides HOM05D005370 ORTHO05D006659 1.4e-64 250.4 225 63.1
Thecc.04G244800 Theobroma cacao HOM05D005370 ORTHO05D006659 3.9e-64 248.8 227 60.8
Gorai.005G046600 Gossypium raimondii HOM05D005370 ORTHO05D006659 6.7e-64 248.1 230 60.4
Gohir.A02G035301 Gossypium hirsutum HOM05D005370 ORTHO05D006659 1.5e-63 246.9 230 60.0
Gohir.D02G042266 Gossypium hirsutum HOM05D005370 ORTHO05D006659 2.0e-63 246.5 230 60.4
FvH4_4g02310 Fragaria vesca HOM05D005370 ORTHO05D006659 4.4e-63 245.4 229 59.0
CANSAT11G2293 Cannabis sativa HOM05D005370 ORTHO05D006659 5.7e-63 245.0 230 61.3
SGA_v2.0_scaffold3169G54286 Striga asiatica HOM05D005370 ORTHO05D006659 1.3e-62 243.8 256 57.8
SGA_v2.0_scaffold580G53040 Striga asiatica HOM05D005370 ORTHO05D006659 2.2e-62 243.0 246 57.7
Lalb_Chr02g0142451 Lupinus albus HOM05D005370 ORTHO05D006659 2.8e-62 242.7 225 61.3
VMungo0720G0865 Vigna mungo HOM05D005370 ORTHO05D006659 2.8e-62 242.7 229 59.0
Medtr1g070900 Medicago truncatula HOM05D005370 ORTHO05D006659 8.2e-62 241.1 225 59.6
PSO210G0029 Papaver somniferum HOM05D005370 ORTHO05D006659 2.9e-59 232.6 242 57.9
HPP92_015262 Vanilla planifolia HOM05D005370 ORTHO05D006659 3.8e-59 232.3 225 59.1
Duzib052G0322 Durio zibethinus HOM05D005370 ORTHO05D006659 6.5e-59 231.5 295 48.1
Glyma.10G031500 Glycine max HOM05D005370 ORTHO05D006659 2.5e-58 229.6 224 58.0
Oeu025788.2 Olea europaea HOM05D005370 ORTHO05D006659 2.5e-58 229.6 199 64.8
PSO238G0055 Papaver somniferum HOM05D005370 ORTHO05D006659 2.1e-57 226.5 242 57.0
Prupe.2G050700 Prunus persica HOM05D005370 ORTHO05D006659 2.7e-57 226.1 230 55.2
Nn1g02548 Nelumbo nucifera HOM05D005370 ORTHO05D000069 4.7e-57 225.3 192 66.1
CDE07G1268 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 8.0e-57 224.6 228 54.4
FAN12G2588 Fragaria x ananassa HOM05D005370 ORTHO05D006659 1.4e-56 223.8 217 57.6
Haze_11274 Corylus avellana HOM05D005370 ORTHO05D006659 3.3e-55 219.2 203 61.6
arahy.Tifrunner.gnm1.ann1.T9F7M4 Arachis hypogaea HOM05D005370 ORTHO05D006659 9.7e-55 217.6 208 59.1
arahy.Tifrunner.gnm1.ann1.XNPI4G Arachis hypogaea HOM05D005370 ORTHO05D006659 1.1e-53 214.2 235 54.5
MD04G1026200 Malus domestica HOM05D005370 ORTHO05D006659 1.4e-53 213.8 195 61.0
ATR0665G285 Amborella trichopoda HOM05D005370 ORTHO05D006659 5.3e-53 211.8 232 54.3
arahy.Tifrunner.gnm1.ann1.7J2YFM Arachis hypogaea HOM05D005370 ORTHO05D006659 2.9e-51 206.1 233 53.6
ClCG01G004480 Citrullus lanatus HOM05D005370 ORTHO05D006659 5.5e-50 201.8 201 58.2
Cpa.g.sc58.39 Carica papaya HOM05D005370 ORTHO05D006659 1.8e-48 196.8 197 59.4
Sc24g0004270 Simmondsia chinensis HOM05D005370 ORTHO05D006659 4.0e-48 195.7 222 55.0
Nitab4.5_0001423g0070 Nicotiana tabacum HOM05D005370 ORTHO05D006659 5.2e-48 195.3 272 49.3
Hund02875 Selenicereus undatus HOM05D005370 ORTHO05D006659 3.4e-47 192.6 234 50.0
Eucgr.G02606 Eucalyptus grandis HOM05D005370 ORTHO05D006659 1.8e-45 186.8 169 61.5
Haze_21184 Corylus avellana HOM05D005370 ORTHO05D006659 1.3e-43 180.6 284 43.7
Nitab4.5_0002156g0030 Nicotiana tabacum HOM05D005370 ORTHO05D006659 3.8e-43 179.1 116 81.0
Nitab4.5_0001840g0120 Nicotiana tabacum HOM05D005370 ORTHO05D006659 8.5e-43 177.9 116 80.2
Sp2g08480 Schrenkiella parvula HOM05D005370 ORTHO05D006659 1.5e-42 177.2 228 46.5
MSTRG.18281 Avicennia marina HOM05D005370 ORTHO05D006659 2.5e-42 176.4 119 78.2
AL8G16570 Arabidopsis lyrata HOM05D005370 ORTHO05D006659 4.2e-42 175.6 227 44.9
BcaC06g31683 Brassica carinata HOM05D005370 ORTHO05D006659 4.2e-42 175.6 227 44.9
Thhalv10017901m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 4.2e-42 175.6 229 48.5
Actinidia19979 Actinidia chinensis HOM05D005370 ORTHO05D006659 5.5e-42 175.3 131 73.3
BcaC06g34636 Brassica carinata HOM05D005370 ORTHO05D006659 5.5e-42 175.3 230 46.5
C07p26250 Brassica napus HOM05D005370 ORTHO05D006659 5.5e-42 175.3 230 46.5
BolC7t43153H Brassica oleracea HOM05D005370 ORTHO05D006659 5.5e-42 175.3 230 46.5
CARHR179930 Cardamine hirsuta HOM05D005370 ORTHO05D006659 5.5e-42 175.3 228 46.9
CDE03G0266 Ceratophyllum demersum HOM05D005370 ORTHO05D006659 5.5e-42 175.3 192 51.6
Prupe.1G027700 Prunus persica HOM05D005370 ORTHO05D006659 5.5e-42 175.3 173 57.2
SGA_v2.0_scaffold138G35287 Striga asiatica HOM05D005370 ORTHO05D006659 1.6e-41 173.7 214 50.0
TPR.G39035 Trifolium pratense HOM05D005370 ORTHO05D000069 3.6e-41 172.6 200 52.5
BraA06t27643Z Brassica rapa HOM05D005370 ORTHO05D006659 8.0e-41 171.4 231 47.6
AT5G43680 Arabidopsis thaliana HOM05D005370 ORTHO05D006659 1.4e-40 170.6 231 46.8
Nitab4.5_0001903g0040 Nicotiana tabacum HOM05D005370 ORTHO05D006659 1.2e-39 167.5 95 87.4
A06p47750 Brassica napus HOM05D005370 ORTHO05D006659 1.5e-39 167.2 227 46.3
Psat3g119240 Pisum sativum HOM05D005370 ORTHO05D006659 1.5e-39 167.2 223 47.5
Glyma.02G142900 Glycine max HOM05D005370 ORTHO05D006659 2.0e-39 166.8 103 82.5
Carub.0008s0497 Capsella rubella HOM05D005370 ORTHO05D006659 4.4e-39 165.6 227 42.7
PGSC0003DMG400017885 Solanum tuberosum HOM05D005370 ORTHO05D006659 4.4e-39 165.6 116 73.3
Sopen01g042090 Solanum pennellii HOM05D005370 ORTHO05D006659 2.3e-35 153.3 178 55.6
Psat5g092160 Pisum sativum HOM05D009633 ORTHO05D011907 8.6e-35 151.4 128 62.5
Aa31LG5G3560 Aethionema arabicum HOM05D005370 ORTHO05D006659 1.8e-32 143.7 229 42.8
Zm00001eb201750 Zea mays HOM05D005370 ORTHO05D006659 2.3e-32 143.3 267 36.3
Mapoly0029s0143 Marchantia polymorpha HOM05D005370 ORTHO05D006659 1.2e-31 141.0 256 39.8
SGA_v2.0_scaffold1G00551 Striga asiatica HOM05D006471 ORTHO05D008157 1.2e-31 141.0 88 75.0
Cc01_g05520 Coffea canephora HOM05D005370 ORTHO05D006659 2.9e-30 136.3 146 57.5
Psat1g083920 Pisum sativum HOM05D005370 ORTHO05D006659 2.9e-30 136.3 159 49.7
Psat0s8363g0040 Pisum sativum HOM05D005370 ORTHO05D006659 3.7e-30 136.0 159 49.7
Pp3c17_23420 Physcomitrium patens HOM05D005370 ORTHO05D006659 1.2e-28 131.0 245 38.0
CBR_g32014 Chara braunii HOM05D005370 ORTHO05D006659 5.6e-26 122.1 257 34.6
Os11g0550900 Oryza sativa ssp. japonica HOM05D005370 ORTHO05D006659 9.5e-26 121.3 256 34.0
Nn8g40523 Nelumbo nucifera HOM05D005370 ORTHO05D006659 6.1e-25 118.6 105 57.1
AagrBONN_evm.TU.Sc2ySwM_228.5248 Anthoceros agrestis HOM05D005370 ORTHO05D006659 3.4e-23 112.8 219 36.5
MBI11_g15920_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 1.7e-22 110.5 133 48.9
Duzib212G0616 Durio zibethinus HOM05D005370 ORTHO05D006659 7.0e-21 105.1 165 43.0
Nitab4.5_0004235g0010 Nicotiana tabacum HOM05D005370 ORTHO05D006659 7.8e-20 101.7 62 80.6
Cc01_g05510 Coffea canephora HOM05D005370 ORTHO05D006659 3.3e-18 96.3 62 77.4
Psat3g119160 Pisum sativum HOM05D005370 ORTHO05D006659 4.3e-18 95.9 163 38.7
SEGI_11901 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 5.6e-18 95.5 66 68.2
Psat1g084080 Pisum sativum HOM05D005370 ORTHO05D006659 1.2e-17 94.4 124 46.8
MBI18_g19775_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.6e-17 92.8 156 39.7
MBI16_g44196_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 6.2e-17 92.0 140 41.4
MBI02_g40862_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 3.1e-16 89.7 141 43.3
Thhalv10003352m.g Eutrema salsugineum HOM05D005370 ORTHO05D006659 7.5e-15 85.1 158 36.7
Psat3g119360 Pisum sativum HOM05D005370 ORTHO05D006659 7.5e-15 85.1 53 77.4
MBI16_g45671_MAGBIO Magnolia biondii HOM05D005370 ORTHO05D006659 4.9e-14 82.4 170 37.1
Solyc01g098540.3 Solanum lycopersicum HOM05D005370 ORTHO05D006659 7.1e-13 78.6 62 71.0
SMO116G0410 Selaginella moellendorffii HOM05D005370 ORTHO05D006659 2.5e-10 70.1 220 26.4
SEGI_21191 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 3.1e-08 63.2 112 41.1
SEGI_37606 Sequoiadendron giganteum HOM05D005370 ORTHO05D006659 1.2e-07 61.2 43 60.5
CAN.G257.103 Capsicum annuum HOM05D005370 ORTHO05D006659 2.6e-07 60.1 55 65.5


User provided reference genes

Program Settings