Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0021007 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 1.6e-97 359.4 176 100.0
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 1.4e-72 276.6 175 79.4
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 1.8e-72 276.2 175 79.4
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 2.0e-71 272.7 175 74.3
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 2.4e-69 265.8 175 74.9
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 1.7e-67 259.6 163 76.7
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 1.7e-67 259.6 163 79.1
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 2.3e-67 259.2 175 74.9
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 1.9e-66 256.1 175 75.4
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 1.9e-66 256.1 163 74.8
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 4.2e-66 255.0 175 73.1
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 4.2e-66 255.0 175 73.1
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 1.2e-65 253.4 163 74.2
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 1.6e-65 253.1 163 76.7
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 1.6e-65 253.1 175 73.7
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 6.1e-65 251.1 175 70.9
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 1.0e-64 250.4 158 75.3
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 5.2e-64 248.1 156 76.3
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 5.2e-64 248.1 158 75.3
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 8.8e-64 247.3 175 70.3
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 2.0e-63 246.1 175 71.4
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 3.4e-63 245.4 159 74.8
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 3.4e-63 245.4 159 73.0
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 4.4e-63 245.0 158 74.7
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 7.5e-63 244.2 159 75.5
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 1.3e-62 243.4 175 69.1
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 1.7e-62 243.0 163 72.4
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 2.2e-62 242.7 158 72.8
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 2.8e-62 242.3 175 68.6
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 3.7e-62 241.9 158 74.1
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 3.7e-62 241.9 163 73.6
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 4.9e-62 241.5 174 69.0
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 4.9e-62 241.5 158 74.1
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 4.9e-62 241.5 176 68.2
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.4e-61 240.0 158 73.4
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 1.4e-61 240.0 158 74.1
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 3.1e-61 238.8 174 68.4
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 4.1e-61 238.4 158 73.4
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 7.0e-61 237.7 157 73.9
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 7.0e-61 237.7 175 68.0
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 9.2e-61 237.3 174 69.5
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 9.2e-61 237.3 175 67.4
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 9.2e-61 237.3 174 68.4
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 9.2e-61 237.3 174 68.4
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 1.2e-60 236.9 141 83.0
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 1.6e-60 236.5 170 69.4
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 1.6e-60 236.5 175 67.4
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 2.0e-60 236.1 201 63.7
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 2.7e-60 235.7 158 73.4
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 2.7e-60 235.7 158 72.8
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 2.7e-60 235.7 176 68.2
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 5.9e-60 234.6 173 70.5
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 5.9e-60 234.6 175 68.0
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 5.9e-60 234.6 175 64.6
BcaC05g29437 Brassica carinata HOM05D005327 ORTHO05D006655 7.8e-60 234.2 176 66.5
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 7.8e-60 234.2 174 67.2
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 7.8e-60 234.2 175 66.3
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 7.8e-60 234.2 175 68.6
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 7.8e-60 234.2 162 71.0
Lj5A731T8 Lonicera japonica HOM05D005327 ORTHO05D006655 1.3e-59 233.4 158 72.2
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 2.3e-59 232.6 175 65.7
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 5.0e-59 231.5 175 65.7
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 5.0e-59 231.5 176 66.5
Gohir.A05G001766 Gossypium hirsutum HOM05D005327 ORTHO05D006655 5.0e-59 231.5 175 65.7
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 5.0e-59 231.5 175 66.9
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 6.6e-59 231.1 163 71.2
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 6.6e-59 231.1 175 65.7
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 8.6e-59 230.7 163 69.9
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 1.5e-58 229.9 176 65.9
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 1.9e-58 229.6 175 65.1
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 1.9e-58 229.6 175 65.7
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 4.3e-58 228.4 176 65.3
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 2.8e-57 225.7 153 73.2
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 3.6e-57 225.3 144 75.7
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 3.6e-57 225.3 175 65.7
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 3.6e-57 225.3 175 65.7
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 1.0e-56 223.8 175 65.7
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 1.2e-55 220.3 175 64.0
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 2.6e-55 219.2 175 63.4
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.6e-55 219.2 158 65.8
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 4.4e-55 218.4 145 73.8
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 8.3e-54 214.2 135 76.3
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 1.1e-53 213.8 191 60.2
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 2.4e-53 212.6 150 68.7
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 5.4e-53 211.5 150 68.7
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 5.4e-53 211.5 175 62.3
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 7.8e-52 207.6 155 65.2
SEGI_09644 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 9.5e-50 200.7 134 69.4
HPP92_000243 Vanilla planifolia HOM05D005327 ORTHO05D006655 4.7e-49 198.4 133 69.9
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 2.3e-48 196.1 163 62.0
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 1.2e-47 193.7 176 55.7
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 4.4e-47 191.8 162 59.3
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 5.8e-47 191.4 178 56.2
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 9.8e-47 190.7 178 56.2
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.3e-46 190.3 178 56.2
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 1.3e-46 190.3 178 56.2
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 2.7e-44 182.6 118 73.7
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 3.5e-44 182.2 175 57.1
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 4.6e-44 181.8 176 54.0
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 6.6e-43 177.9 174 54.6
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 2.1e-41 172.9 112 75.0
SEGI_13698 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.8e-41 172.6 115 71.3
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 6.4e-38 161.4 149 53.7
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 3.2e-29 132.5 83 78.3
QL11p009727 Quercus lobata HOM05D005327 ORTHO05D006655 3.9e-27 125.6 80 76.2
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 1.2e-25 120.6 76 76.3
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 1.5e-23 113.6 85 67.1
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 2.2e-22 109.8 99 49.5
A01p41940 Brassica napus HOM05D005327 ORTHO05D006655 2.9e-22 109.4 81 63.0
Gohir.D05G309350 Gossypium hirsutum HOM05D005327 ORTHO05D006655 9.3e-21 104.4 64 75.0
Gorai.009G329700 Gossypium raimondii HOM05D005327 ORTHO05D006655 1.6e-20 103.6 64 75.0
Gohir.D09G007150 Gossypium hirsutum HOM05D005327 ORTHO05D006655 3.5e-20 102.4 64 73.4
C03p49960 Brassica napus HOM05D005327 ORTHO05D006655 3.2e-13 79.3 44 84.1
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 1.2e-12 77.4 93 46.2
C03p47280 Brassica napus HOM05D005327 ORTHO05D006655 2.1e-12 76.6 44 81.8
BcaC01g03662 Brassica carinata HOM05D005327 ORTHO05D006655 2.7e-12 76.3 44 81.8
BcaC01g03663 Brassica carinata HOM05D005327 ORTHO05D006655 2.7e-12 76.3 44 81.8
BolC3t17287H Brassica oleracea HOM05D005327 ORTHO05D006655 2.7e-12 76.3 44 81.8
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 5.3e-08 62.0 54 53.7
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 1.2e-07 60.8 99 38.4
C05p60630 Brassica napus HOM05D003564 ORTHO05D001609 1.5e-07 60.5 146 31.5
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 1.5e-07 60.5 146 31.5
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.6e-07 59.7 111 36.9
Thhalv10020583m.g Eutrema salsugineum HOM05D003564 ORTHO05D005332 4.5e-07 58.9 126 31.0
BraA03t12654Z Brassica rapa HOM05D003564 ORTHO05D005332 5.8e-07 58.5 128 32.0
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 5.8e-07 58.5 117 35.0
MSTRG.21761 Avicennia marina HOM05D003564 ORTHO05D005332 9.9e-07 57.8 114 36.0
CARHR081120 Cardamine hirsuta HOM05D003564 ORTHO05D005332 9.9e-07 57.8 142 28.9
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.3e-06 57.4 128 31.2
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 1.7e-06 57.0 106 34.9
A03p34740 Brassica napus HOM05D003564 ORTHO05D005332 1.7e-06 57.0 128 32.0
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 1.7e-06 57.0 116 34.5
Sp3g05510 Schrenkiella parvula HOM05D003564 ORTHO05D005332 1.7e-06 57.0 128 31.2
Carub.0003s0604 Capsella rubella HOM05D003564 ORTHO05D005332 2.2e-06 56.6 126 31.7
Sopen09g026020 Solanum pennellii HOM05D005327 ORTHO05D006655 2.2e-06 56.6 60 53.3
Duzib212G0473 Durio zibethinus HOM05D003564 ORTHO05D005332 2.9e-06 56.2 127 32.3
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 2.9e-06 56.2 109 35.8
AL3G17620 Arabidopsis lyrata HOM05D003564 ORTHO05D005332 3.8e-06 55.8 128 30.5
Oeu001157.1 Olea europaea HOM05D003564 ORTHO05D005332 3.8e-06 55.8 116 33.6
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 4.9e-06 55.5 128 31.2
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 4.9e-06 55.5 128 31.2
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 4.9e-06 55.5 106 35.8
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 4.9e-06 55.5 88 38.6
AT3G06580 Arabidopsis thaliana HOM05D003564 ORTHO05D005332 6.4e-06 55.1 128 30.5
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 6.4e-06 55.1 116 32.8
Migut.N00033 Erythranthe guttata HOM05D003564 ORTHO05D005332 6.4e-06 55.1 130 30.8
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 6.4e-06 55.1 104 34.6
MSTRG.24826 Avicennia marina HOM05D003564 ORTHO05D005332 8.4e-06 54.7 145 28.3
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 8.4e-06 54.7 106 35.8
Nn3g21762 Nelumbo nucifera HOM05D003564 ORTHO05D005332 8.4e-06 54.7 131 32.1


User provided reference genes

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