Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020995 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 2.0e-59 232.3 118 100.0
CSS0015544 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.4e-28 129.8 127 60.6
CSS0011716 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.6e-21 106.3 62 85.5
CSS0006325 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.3e-15 86.7 119 47.9
CSS0014629 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.3e-15 86.7 119 47.9
CSS0007536 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.0e-12 75.1 51 76.5
CSS0046042 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 4.0e-12 75.1 119 42.9
Rhsim07G0018100 Rhododendron simsii HOM05D004612 ORTHO05D004940 4.5e-11 71.6 119 40.3
COL.COLO4_12673 Corchorus olitorius HOM05D004612 ORTHO05D004940 5.8e-11 71.2 120 40.0
Actinidia09998 Actinidia chinensis HOM05D004612 ORTHO05D004940 7.6e-11 70.9 83 51.8
GSVIVG01026844001 Vitis vinifera HOM05D004612 ORTHO05D004940 2.9e-10 68.9 120 38.3
Cfa003958 Carpinus fangiana HOM05D004612 ORTHO05D004940 3.8e-10 68.6 120 38.3
Haze_15464 Corylus avellana HOM05D004612 ORTHO05D004940 4.9e-10 68.2 120 38.3
Eucgr.D02267 Eucalyptus grandis HOM05D004612 ORTHO05D004940 4.9e-10 68.2 120 39.2
QL08p049561 Quercus lobata HOM05D004612 ORTHO05D004940 6.4e-10 67.8 120 39.2
Duzib133G0359 Durio zibethinus HOM05D004612 ORTHO05D004940 8.4e-10 67.4 121 38.0
MD07G1141600 Malus domestica HOM05D004612 ORTHO05D004940 8.4e-10 67.4 120 38.3
TWI59G0622 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 8.4e-10 67.4 119 37.8
TWI59G1187 Tripterygium wilfordii HOM05D004612 ORTHO05D004940 8.4e-10 67.4 119 37.8
CSS0040114 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.1e-09 67.0 60 63.3
Gohir.A11G082600 Gossypium hirsutum HOM05D004612 ORTHO05D004940 1.1e-09 67.0 120 38.3
MELO3C006131.2 Cucumis melo HOM05D004612 ORTHO05D004940 2.4e-09 65.9 120 38.3
RcHm_v2.0_Chr1g0353691 Rosa chinensis HOM05D004612 ORTHO05D004940 3.2e-09 65.5 120 38.3
Gohir.D11G091300 Gossypium hirsutum HOM05D004612 ORTHO05D004940 4.2e-09 65.1 120 37.5
Gorai.007G097300 Gossypium raimondii HOM05D004612 ORTHO05D004940 4.2e-09 65.1 120 37.5
Prupe.2G162500 Prunus persica HOM05D004612 ORTHO05D004940 4.2e-09 65.1 120 38.3
Glyma.03G096900 Glycine max HOM05D004612 ORTHO05D004940 5.5e-09 64.7 75 52.0
Thecc.01G363500 Theobroma cacao HOM05D004612 ORTHO05D004940 5.5e-09 64.7 120 37.5
vmacro13313 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 5.5e-09 64.7 83 45.8
ClCG05G001720 Citrullus lanatus HOM05D004612 ORTHO05D004940 9.3e-09 63.9 120 38.3
CsaV3_3G009110 Cucumis sativus L. HOM05D004612 ORTHO05D004940 9.3e-09 63.9 120 37.5
MD01G1053600 Malus domestica HOM05D004612 ORTHO05D004940 1.2e-08 63.5 76 48.7
Ciclev10024326m.g Citrus clementina HOM05D004612 ORTHO05D004940 1.6e-08 63.2 120 37.5
PGR031G1383 Punica granatum HOM05D004612 ORTHO05D004940 2.1e-08 62.8 120 37.5
Dinv32447 Davidia involucrata HOM05D004612 ORTHO05D004940 2.7e-08 62.4 132 35.6
Potri.014G080600 Populus trichocarpa HOM05D004612 ORTHO05D004940 2.7e-08 62.4 84 45.2
TAR629G0951 Trochodendron aralioides HOM05D004612 ORTHO05D004940 2.7e-08 62.4 118 38.1
Cpa.g.sc20.34 Carica papaya HOM05D004612 ORTHO05D004940 3.5e-08 62.0 120 35.0
FvH4_7g13631 Fragaria vesca HOM05D004612 ORTHO05D004940 4.6e-08 61.6 119 36.1
FAN06G2470 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.6e-08 61.6 119 36.1
FAN06G3441 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.6e-08 61.6 119 36.1
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 4.6e-08 61.6 119 36.1
Hma1.2p1_0033F.1_g020400 Hydrangea macrophylla HOM05D004612 ORTHO05D004940 4.6e-08 61.6 119 37.8
Sed0015875 Sechium edule HOM05D004612 ORTHO05D004940 4.6e-08 61.6 120 39.2
arahy.Tifrunner.gnm1.ann1.4I97V1 Arachis hypogaea HOM05D004612 ORTHO05D004940 6.0e-08 61.2 75 48.0
Nn3g17842 Nelumbo nucifera HOM05D004612 ORTHO05D004940 6.0e-08 61.2 80 46.2
Phvul.011G160800 Phaseolus vulgaris HOM05D004612 ORTHO05D004940 6.0e-08 61.2 75 49.3
vmacro22088 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 7.9e-08 60.8 79 44.3
Ca_27541_v3 Cicer arietinum L. HOM05D004612 ORTHO05D004940 1.0e-07 60.5 73 49.3
FAN01G1921 Fragaria x ananassa HOM05D000092 ORTHO05D004940 1.3e-07 60.1 80 45.0
HanXRQChr16g0523031 Helianthus annuus HOM05D004612 ORTHO05D004940 3.0e-07 58.9 120 33.3
VMungo1127G0482 Vigna mungo HOM05D004612 ORTHO05D004940 3.0e-07 58.9 75 48.0
Lj3g0020312 Lotus japonicus HOM05D004612 ORTHO05D004940 3.9e-07 58.5 75 46.7
Sabra14G0058500 Salix brachista HOM05D004612 ORTHO05D004940 3.9e-07 58.5 84 44.0
Lalb_Chr10g0097231 Lupinus albus HOM05D004612 ORTHO05D004940 5.1e-07 58.2 75 46.7
Prupe.8G034000 Prunus persica HOM05D004612 ORTHO05D004940 5.1e-07 58.2 76 47.4
FAN03G2220 Fragaria x ananassa HOM05D004612 ORTHO05D004940 6.7e-07 57.8 118 34.7
TPR.G4369 Trifolium pratense HOM05D004612 ORTHO05D004940 8.7e-07 57.4 74 48.6
Manes.12G065000 Manihot esculenta HOM05D004612 ORTHO05D004940 1.1e-06 57.0 84 41.7
Migut.B01722 Erythranthe guttata HOM05D004612 ORTHO05D004940 1.5e-06 56.6 75 44.0
Medtr8g031580 Medicago truncatula HOM05D004612 ORTHO05D004940 1.5e-06 56.6 73 46.6
Sc07g0008070 Simmondsia chinensis HOM05D004612 ORTHO05D004940 1.5e-06 56.6 120 34.2
CSS0005777 Camellia sinensis var. sinensis HOM05D004612 ORTHO05D004940 1.9e-06 56.2 44 70.5
Cc02_g37600 Coffea canephora HOM05D004612 ORTHO05D004940 2.5e-06 55.8 78 42.3
Lsat_1_v5_gn_4_36480 Lactuca sativa HOM05D004612 ORTHO05D004940 2.5e-06 55.8 102 40.2
Lj9C580G6 Lonicera japonica HOM05D004612 ORTHO05D004940 2.5e-06 55.8 84 39.3
Atru.chr5.446 Acer truncatum HOM05D004612 ORTHO05D004940 4.3e-06 55.1 75 45.3
Aqoxy46s002 Aquilegia oxysepala HOM05D004612 ORTHO05D004940 4.3e-06 55.1 118 33.1
Oeu004526.1 Olea europaea HOM05D004612 ORTHO05D004940 5.6e-06 54.7 80 42.5
Psat4g153800 Pisum sativum HOM05D004612 ORTHO05D004940 7.4e-06 54.3 73 47.9
CiPaw.02G028400 Carya illinoinensis HOM05D004612 ORTHO05D004940 9.6e-06 53.9 71 43.7
vmacro00164 Vaccinium macrocarpon HOM05D004612 ORTHO05D004940 9.6e-06 53.9 37 67.6


User provided reference genes

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