Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020970 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 0.0e+00 1204.5 643 100.0
CSS0024507 Camellia sinensis var. sinensis HOM05D004530 ORTHO05D005839 0.0e+00 1135.6 655 94.7
Actinidia12143 Actinidia chinensis HOM05D004530 ORTHO05D005839 3.9e-133 479.6 646 47.4
vmacro13497 Vaccinium macrocarpon HOM05D004530 ORTHO05D005839 1.6e-123 447.6 645 45.0
Rhsim07G0036000 Rhododendron simsii HOM05D004530 ORTHO05D005839 4.3e-116 422.9 645 43.7
Dinv44062 Davidia involucrata HOM05D004530 ORTHO05D005839 5.8e-105 386.0 627 42.9
Hma1.2p1_0041F.1_g025350 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 4.0e-98 363.2 598 41.8
GSVIVG01018280001 Vitis vinifera HOM05D004530 ORTHO05D005839 3.4e-89 333.6 647 37.6
Migut.B01535 Erythranthe guttata HOM05D004530 ORTHO05D005839 4.5e-89 333.2 590 38.3
QL04p030285 Quercus lobata HOM05D004530 ORTHO05D005839 2.2e-88 330.9 646 37.3
TAR629G3313 Trochodendron aralioides HOM05D004530 ORTHO05D005839 4.2e-87 326.6 595 38.8
Ca_25804_v3 Cicer arietinum L. HOM05D004530 ORTHO05D005839 9.3e-87 325.5 589 38.2
TAR375G0493 Trochodendron aralioides HOM05D004530 ORTHO05D005839 6.1e-86 322.8 595 38.2
Thecc.01G394900 Theobroma cacao HOM05D004530 ORTHO05D005839 7.9e-86 322.4 599 37.1
Eucgr.E01549 Eucalyptus grandis HOM05D004530 ORTHO05D005839 1.0e-85 322.0 589 39.2
Psat4g224840 Pisum sativum HOM05D004530 ORTHO05D005839 1.8e-85 321.2 599 37.1
MSTRG.20690 Avicennia marina HOM05D004530 ORTHO05D005839 2.3e-85 320.9 582 37.8
Medtr8g006895 Medicago truncatula HOM05D004530 ORTHO05D005839 5.1e-85 319.7 589 37.2
TPR.G33134 Trifolium pratense HOM05D004530 ORTHO05D005839 6.7e-85 319.3 586 38.6
Ciclev10019258m.g Citrus clementina HOM05D004530 ORTHO05D005839 1.3e-83 315.1 594 37.7
SalBow5G0820 Salvia bowleyana HOM05D004530 ORTHO05D005839 1.3e-83 315.1 593 37.6
Glyma.10G120400 Glycine max HOM05D004530 ORTHO05D005839 2.8e-83 313.9 581 38.2
COL.COLO4_12407 Corchorus olitorius HOM05D004530 ORTHO05D005839 4.8e-83 313.2 595 37.3
Haze_02848 Corylus avellana HOM05D004530 ORTHO05D005839 4.8e-83 313.2 646 35.9
Manes.01G274600 Manihot esculenta HOM05D004530 ORTHO05D005839 1.8e-82 311.2 587 37.6
Duzib133G0606 Durio zibethinus HOM05D004530 ORTHO05D005839 5.3e-82 309.7 593 37.3
Lj3g0003084 Lotus japonicus HOM05D004530 ORTHO05D005839 5.3e-82 309.7 585 36.4
Phvul.010G049900 Phaseolus vulgaris HOM05D004530 ORTHO05D005839 1.2e-81 308.5 590 37.3
Atru.chr5.126 Acer truncatum HOM05D004530 ORTHO05D005839 1.5e-81 308.1 591 36.4
Gohir.A08G138600 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.4e-81 307.0 594 37.0
Gorai.004G166100 Gossypium raimondii HOM05D004530 ORTHO05D005839 3.4e-81 307.0 601 36.9
MD07G1109200 Malus domestica HOM05D004530 ORTHO05D005839 4.5e-81 306.6 598 36.1
Duzib138G0269 Durio zibethinus HOM05D004530 ORTHO05D005839 1.7e-80 304.7 595 37.1
Lalb_Chr12g0210571 Lupinus albus HOM05D004530 ORTHO05D005839 3.8e-80 303.5 584 37.7
Lsat_1_v5_gn_3_126420 Lactuca sativa HOM05D004530 ORTHO05D005839 5.0e-80 303.1 581 38.2
MD02G1212800 Malus domestica HOM05D004530 ORTHO05D005839 1.4e-79 301.6 592 36.8
CAN.G1473.6 Capsicum annuum HOM05D004530 ORTHO05D005839 2.5e-79 300.8 585 36.9
Potri.014G047600 Populus trichocarpa HOM05D004530 ORTHO05D005839 1.6e-78 298.1 588 36.1
Glyma.20G070800 Glycine max HOM05D004530 ORTHO05D005839 3.6e-78 297.0 566 37.8
Nn1g00849 Nelumbo nucifera HOM05D004530 ORTHO05D005839 1.0e-77 295.4 587 34.9
Hund17085 Selenicereus undatus HOM05D004530 ORTHO05D005839 3.0e-77 293.9 593 37.3
arahy.Tifrunner.gnm1.ann1.WR8IC8 Arachis hypogaea HOM05D004530 ORTHO05D005839 6.7e-77 292.7 586 35.8
HanXRQChr03g0093061 Helianthus annuus HOM05D004530 ORTHO05D005839 1.1e-76 292.0 581 36.7
Hund27405 Selenicereus undatus HOM05D004530 ORTHO05D005839 1.1e-76 292.0 583 37.7
arahy.Tifrunner.gnm1.ann1.BH8PB4 Arachis hypogaea HOM05D004530 ORTHO05D005839 1.5e-76 291.6 586 35.8
Nn6g33827 Nelumbo nucifera HOM05D004530 ORTHO05D005839 5.7e-76 289.7 588 35.0
AUR62013743 Chenopodium quinoa HOM05D004530 ORTHO05D005839 7.4e-76 289.3 587 35.4
VMungo0331G0336 Vigna mungo HOM05D004530 ORTHO05D005839 1.3e-75 288.5 576 38.0
PGR042G2176 Punica granatum HOM05D004530 ORTHO05D005839 1.7e-75 288.1 592 35.1
Solyc01g090230.3 Solanum lycopersicum HOM05D004530 ORTHO05D005839 3.7e-75 287.0 585 36.4
DCAR_029469 Daucus carota HOM05D004530 ORTHO05D005839 4.8e-75 286.6 616 35.2
Ah.05g173100 Amaranthus hybridus HOM05D004530 ORTHO05D005839 6.3e-75 286.2 574 37.3
Sopen01g036030 Solanum pennellii HOM05D004530 ORTHO05D005839 2.4e-74 284.3 585 36.1
TWI59G1339 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 2.0e-73 281.2 579 35.1
PSO732G0778 Papaver somniferum HOM05D004530 ORTHO05D005839 3.4e-73 280.4 595 35.6
Aqoxy7G00763 Aquilegia oxysepala HOM05D004530 ORTHO05D005839 5.9e-73 279.6 598 34.3
ECA240G1126 Erigeron canadensis HOM05D004530 ORTHO05D005839 7.7e-73 279.3 582 35.9
PSO675G1201 Papaver somniferum HOM05D004530 ORTHO05D005839 1.7e-72 278.1 602 35.0
CiPaw.13G026100 Carya illinoinensis HOM05D004530 ORTHO05D005839 8.5e-72 275.8 647 32.9
Sed0010787 Sechium edule HOM05D004530 ORTHO05D005839 7.2e-71 272.7 591 35.4
CsaV3_3G007220 Cucumis sativus L. HOM05D004530 ORTHO05D005839 9.4e-71 272.3 586 35.2
FvH4_7g10200 Fragaria vesca HOM05D004530 ORTHO05D005839 1.6e-70 271.6 589 35.1
FAN06G5079 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.6e-70 271.6 589 35.1
Gorai.008G108800 Gossypium raimondii HOM05D004530 ORTHO05D005839 2.1e-70 271.2 592 35.0
Lalb_Chr07g0195421 Lupinus albus HOM05D004530 ORTHO05D005839 2.1e-70 271.2 585 33.3
Gohir.D12G099900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 4.7e-70 270.0 592 35.0
TWI14G0541 Tripterygium wilfordii HOM05D004530 ORTHO05D005839 6.1e-70 269.6 581 34.4
FAN10G1666 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.0e-69 268.9 589 34.6
Cc02_g25120 Coffea canephora HOM05D004530 ORTHO05D005839 3.9e-69 266.9 514 37.4
FAN01G0552 Fragaria x ananassa HOM05D004530 ORTHO05D005839 5.1e-69 266.5 589 34.8
FAN10G4098 Fragaria x ananassa HOM05D004530 ORTHO05D005839 6.7e-69 266.2 589 34.5
EL10Ac1g00762 Beta vulgaris HOM05D004530 ORTHO05D005839 8.8e-69 265.8 626 33.9
FAN03G1354 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.1e-68 265.4 590 33.9
AUR62043872 Chenopodium quinoa HOM05D004530 ORTHO05D005839 2.6e-68 264.2 590 33.9
MELO3C005943.2 Cucumis melo HOM05D004530 ORTHO05D005839 4.4e-68 263.5 594 34.7
PSO832G0798 Papaver somniferum HOM05D004530 ORTHO05D005839 1.1e-66 258.8 589 32.8
THA.LOC104817000 Tarenaya hassleriana HOM05D004530 ORTHO05D005839 1.6e-65 255.0 588 33.5
Sabra14G0034600 Salix brachista HOM05D004530 ORTHO05D005839 7.7e-65 252.7 600 33.8
RcHm_v2.0_Chr1g0347921 Rosa chinensis HOM05D004530 ORTHO05D005839 1.1e-63 248.8 568 33.5
ATR0057G115 Amborella trichopoda HOM05D004530 ORTHO05D005839 2.5e-63 247.7 600 32.2
BcaB03g13633 Brassica carinata HOM05D004530 ORTHO05D005839 4.7e-62 243.4 582 33.7
A10p00110 Brassica napus HOM05D004530 ORTHO05D005839 3.0e-61 240.7 583 32.4
C05p00080 Brassica napus HOM05D004530 ORTHO05D005839 3.0e-61 240.7 583 32.8
BolC5t28795H Brassica oleracea HOM05D004530 ORTHO05D005839 3.0e-61 240.7 583 32.8
BraA10t42289Z Brassica rapa HOM05D004530 ORTHO05D005839 3.0e-61 240.7 583 32.4
MBI04_g41763_MAGBIO Magnolia biondii HOM05D004530 ORTHO05D005839 1.5e-60 238.4 591 32.7
Gohir.A12G097000 Gossypium hirsutum HOM05D004530 ORTHO05D005839 2.6e-60 237.7 580 34.1
Gohir.D08G159900 Gossypium hirsutum HOM05D004530 ORTHO05D005839 9.7e-60 235.7 450 36.9
unitig_26.g9593 Utricularia gibba HOM05D004530 ORTHO05D005839 1.3e-59 235.3 568 32.7
Thhalv10007106m.g Eutrema salsugineum HOM05D004530 ORTHO05D005839 1.7e-59 235.0 585 31.6
AUR62023408 Chenopodium quinoa HOM05D004530 ORTHO05D005839 1.4e-58 231.9 580 32.2
Gorai.004G070300 Gossypium raimondii HOM05D004530 ORTHO05D005839 3.8e-56 223.8 575 33.2
AL1G10110 Arabidopsis lyrata HOM05D004530 ORTHO05D005839 9.4e-55 219.2 590 31.4
Carub.0001s0010 Capsella rubella HOM05D004530 ORTHO05D005839 1.4e-53 215.3 589 31.6
FAN06G2217 Fragaria x ananassa HOM05D004530 ORTHO05D005839 1.4e-53 215.3 585 32.3
Potri.002G137800 Populus trichocarpa HOM05D004530 ORTHO05D005839 8.8e-53 212.6 406 36.5
Sc26g0001580 Simmondsia chinensis HOM05D004530 ORTHO05D005839 9.8e-52 209.1 514 34.4
CARHR000210 Cardamine hirsuta HOM05D004530 ORTHO05D005839 4.8e-51 206.8 582 32.5
ClCG05G000120 Citrullus lanatus HOM05D004530 ORTHO05D005839 6.3e-51 206.5 363 38.8
TPR.G23922 Trifolium pratense HOM05D004530 ORTHO05D005839 1.8e-50 204.9 200 57.0
Prupe.2G131900 Prunus persica HOM05D004530 ORTHO05D005839 2.7e-49 201.1 406 35.2
Aa31LG1G11480 Aethionema arabicum HOM05D004530 ORTHO05D005839 6.5e-48 196.4 313 41.2
Zm00001eb321770 Zea mays HOM05D004530 ORTHO05D005839 4.0e-45 187.2 588 28.2
Zm00001eb105340 Zea mays HOM05D004530 ORTHO05D005839 6.8e-45 186.4 592 28.9
AT1G02120 Arabidopsis thaliana HOM05D004530 ORTHO05D005839 1.5e-44 185.3 392 32.9
Peaxi162Scf00475g00418 Petunia axillaris HOM05D004530 ORTHO05D005839 7.5e-44 183.0 246 47.2
Gohir.D08G067550 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.7e-43 180.6 384 35.2
CDE11G0737 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.6e-41 175.3 504 31.5
Mapoly0083s0023 Marchantia polymorpha HOM05D004530 ORTHO05D005839 1.6e-41 175.3 614 27.4
Pp3c9_25660 Physcomitrium patens HOM05D004530 ORTHO05D005839 1.3e-40 172.2 624 26.8
CDE06G0463 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 7.3e-39 166.4 581 27.4
SGA_v2.0_scaffold52G19226 Striga asiatica HOM05D004530 ORTHO05D005839 4.0e-37 160.6 481 31.4
Gohir.A08G058400 Gossypium hirsutum HOM05D004530 ORTHO05D005839 3.4e-36 157.5 560 28.4
AagrBONN_evm.TU.Sc2ySwM_117.1176 Anthoceros agrestis HOM05D004530 ORTHO05D005839 5.7e-36 156.8 646 26.6
Ah.05g174020 Amaranthus hybridus HOM05D004530 ORTHO05D005839 9.8e-36 156.0 282 39.4
Cc00_g35630 Coffea canephora HOM05D004530 ORTHO05D005839 9.8e-36 156.0 216 44.0
Os07g0491600 Oryza sativa ssp. japonica HOM05D004530 ORTHO05D005839 2.0e-33 148.3 264 36.7
HPP92_022509 Vanilla planifolia HOM05D004530 ORTHO05D005839 2.8e-30 137.9 372 30.9
CBR_g3459 Chara braunii HOM05D004530 ORTHO05D000353 1.8e-29 135.2 407 27.8
SMO228G0106 Selaginella moellendorffii HOM05D004530 ORTHO05D005839 1.3e-27 129.0 393 27.7
Lj7A546T15 Lonicera japonica HOM05D004530 ORTHO05D005839 3.6e-22 110.9 174 41.4
Hma1.2p1_0041F.1_g025360 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 2.3e-21 108.2 129 52.7
Actinidia32503 Actinidia chinensis HOM05D004530 ORTHO05D037961 1.7e-19 102.1 126 47.6
Cpa.g.sc22.81 Carica papaya HOM05D004530 ORTHO05D005839 2.2e-19 101.7 89 58.4
Nitab4.5_0007027g0030 Nicotiana tabacum HOM05D004530 ORTHO05D005839 1.4e-18 99.0 98 55.1
Nitab4.5_0000920g0020 Nicotiana tabacum HOM05D004530 ORTHO05D005839 7.1e-18 96.7 98 54.1
Ah.05g174030 Amaranthus hybridus HOM05D004530 ORTHO05D005839 1.7e-16 92.0 85 57.6
Lj9A557G31 Lonicera japonica HOM05D004530 ORTHO05D005839 2.3e-16 91.7 317 28.4
CDE06G0904 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 2.5e-15 88.2 149 36.2
Hma1.2p1_0041F.1_g025340 Hydrangea macrophylla HOM05D004530 ORTHO05D005839 2.5e-15 88.2 78 59.0
CiPaw.03G262200 Carya illinoinensis HOM05D004530 ORTHO05D005839 2.8e-14 84.7 89 49.4
TPR.G33115 Trifolium pratense HOM05D004530 ORTHO05D009811 2.8e-14 84.7 332 28.9
Aa31LG1G11490 Aethionema arabicum HOM05D004530 ORTHO05D005839 1.4e-13 82.4 77 53.2
PRCOL_00001515 Prasinoderma coloniale HOM05D004530 ORTHO05D005839 2.3e-13 81.6 110 39.1
Cfa011069 Carpinus fangiana HOM05D004530 ORTHO05D005839 3.1e-13 81.3 77 54.5
SEGI_20424 Sequoiadendron giganteum HOM05D004530 ORTHO05D005839 2.2e-11 75.1 317 26.2
Lsat_1_v5_gn_3_119640 Lactuca sativa HOM05D004530 ORTHO05D048377 2.9e-11 74.7 129 38.0
Cpa.g.sc22.80 Carica papaya HOM05D004530 ORTHO05D005839 4.9e-11 73.9 188 31.4
CDE07G0055 Ceratophyllum demersum HOM05D004530 ORTHO05D005839 1.6e-09 68.9 75 46.7
Cre16.g664050 Chlamydomonas reinhardtii HOM05D004530 ORTHO05D005839 1.7e-08 65.5 105 28.6
Lj9A557T37 Lonicera japonica HOM05D004530 ORTHO05D005839 8.6e-08 63.2 128 34.4
Gohir.D12G111650 Gossypium hirsutum HOM05D004530 ORTHO05D005839 4.3e-07 60.8 32 81.2
Gorai.008G121000 Gossypium raimondii HOM05D004530 ORTHO05D005839 1.2e-06 59.3 35 74.3


User provided reference genes

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