Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.9e-235 817.4 399 100.0
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.3e-219 766.1 420 90.5
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 1.5e-207 726.1 420 85.0
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.2e-206 720.7 418 84.7
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.7e-201 705.3 418 82.3
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.0e-200 701.8 418 82.1
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.1e-199 699.9 437 79.9
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 1.1e-194 683.3 419 79.7
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 4.3e-191 671.4 420 79.0
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.3e-190 669.8 412 79.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.8e-190 668.7 420 77.9
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.1e-189 666.8 419 77.1
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.8e-189 666.0 420 77.9
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 3.1e-189 665.2 420 77.6
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 9.0e-189 663.7 368 88.9
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 1.2e-188 663.3 420 77.1
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 5.8e-188 661.0 419 77.1
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 7.6e-188 660.6 420 76.7
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 2.9e-187 658.7 417 76.7
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 4.9e-187 657.9 437 75.5
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 6.4e-187 657.5 420 75.7
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 6.4e-187 657.5 420 76.2
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.9e-186 656.0 416 75.5
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 2.4e-186 655.6 420 75.0
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 2.4e-186 655.6 416 75.0
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 2.4e-186 655.6 416 75.0
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 3.2e-186 655.2 416 75.5
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 3.2e-186 655.2 417 77.0
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 3.2e-186 655.2 420 76.4
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 5.4e-186 654.4 417 76.5
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.1e-186 654.1 420 74.8
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 7.1e-186 654.1 414 76.3
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.2e-185 653.3 414 75.8
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 1.6e-185 652.9 414 76.1
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 3.5e-185 651.7 416 75.7
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 4.6e-185 651.4 412 76.7
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 4.6e-185 651.4 420 75.5
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 7.9e-185 650.6 417 75.3
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.3e-184 649.8 417 76.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 1.3e-184 649.8 442 72.6
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 1.3e-184 649.8 417 76.3
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.3e-184 649.8 412 76.9
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.8e-184 649.4 411 76.2
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.0e-184 648.7 414 75.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.9e-184 648.3 420 75.0
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 3.9e-184 648.3 416 76.7
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.7e-184 647.5 416 74.3
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 8.7e-184 647.1 416 74.5
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.1e-183 646.7 417 75.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 1.5e-183 646.4 417 76.3
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 1.5e-183 646.4 417 76.3
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.5e-183 645.6 419 75.7
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 3.3e-183 645.2 417 76.3
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.3e-183 644.8 419 75.4
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 4.3e-183 644.8 416 74.8
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 5.6e-183 644.4 416 73.8
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 9.6e-183 643.7 420 74.3
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 2.1e-182 642.5 417 74.6
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 8.1e-182 640.6 420 74.5
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 8.1e-182 640.6 411 74.5
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 8.1e-182 640.6 417 75.5
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 8.1e-182 640.6 411 74.0
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 1.1e-181 640.2 418 75.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.1e-181 640.2 433 73.4
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.1e-181 640.2 417 74.8
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 1.4e-181 639.8 417 74.6
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-181 639.8 432 74.1
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 1.8e-181 639.4 417 74.8
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.4e-181 639.0 412 76.2
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 2.4e-181 639.0 420 73.3
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.0e-181 638.3 433 73.4
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.0e-181 638.3 416 73.3
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 4.0e-181 638.3 437 72.1
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 5.3e-181 637.9 414 76.1
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 1.2e-180 636.7 414 74.2
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.4e-180 635.2 414 75.8
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 4.5e-180 634.8 457 68.9
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.0e-179 633.6 417 74.8
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 1.3e-179 633.3 420 74.3
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 3.8e-179 631.7 419 74.5
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 3.8e-179 631.7 417 74.1
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.9e-179 631.3 433 73.0
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 8.4e-179 630.6 412 74.8
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.1e-178 630.2 416 72.8
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 9.3e-178 627.1 412 72.6
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 9.3e-178 627.1 411 74.5
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 1.2e-177 626.7 412 71.8
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 4.6e-177 624.8 420 72.6
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 7.9e-177 624.0 416 71.2
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 1.0e-176 623.6 412 72.1
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-176 622.9 420 71.0
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 5.1e-176 621.3 416 72.1
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.1e-175 620.2 412 73.5
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 1.5e-175 619.8 416 71.6
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 1.5e-175 619.8 415 72.8
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 1.9e-175 619.4 416 71.6
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 7.4e-175 617.5 416 71.6
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 1.3e-174 616.7 418 71.3
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.3e-174 616.7 416 71.4
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 1.3e-174 616.7 416 73.3
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.3e-174 616.7 417 72.4
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 2.1e-174 615.9 409 75.3
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 4.8e-174 614.8 418 72.2
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 6.2e-174 614.4 413 73.1
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 6.2e-174 614.4 411 71.5
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 1.8e-173 612.8 417 71.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 6.9e-173 610.9 416 70.9
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 2.0e-172 609.4 420 71.2
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.4e-172 608.6 453 66.2
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 5.8e-172 607.8 416 71.6
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 5.0e-171 604.7 413 71.2
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 8.4e-171 604.0 419 71.8
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 4.2e-170 601.7 415 72.0
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 9.3e-170 600.5 420 70.5
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 1.2e-169 600.1 416 69.7
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 3.5e-169 598.6 497 62.2
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 4.6e-169 598.2 420 69.8
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.0e-168 597.0 417 69.1
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 1.3e-168 596.7 407 72.7
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 3.9e-168 595.1 418 69.6
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 6.7e-168 594.3 420 71.2
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.5e-167 593.2 408 69.4
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 1.4e-165 586.6 416 71.9
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 1.4e-165 586.6 413 68.0
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 1.8e-165 586.3 420 71.0
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 2.6e-164 582.4 406 71.7
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 1.1e-162 577.0 409 68.0
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.2e-161 573.5 414 68.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 2.1e-161 572.8 369 74.3
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 1.5e-159 566.6 410 68.3
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 2.5e-159 565.8 421 64.4
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.2e-153 547.0 356 73.6
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 6.7e-152 541.2 363 72.7
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 9.1e-149 530.8 416 65.1
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 9.1e-149 530.8 341 75.1
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 1.9e-146 523.1 341 73.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 9.4e-146 520.8 407 64.4
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 5.9e-140 501.5 409 57.7
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 6.5e-139 498.0 413 57.6
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 3.2e-138 495.7 412 58.5
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 5.5e-138 495.0 409 57.7
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.4e-120 437.2 301 73.1
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 9.8e-119 431.0 422 51.7
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.7e-116 422.9 301 71.4
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 7.8e-116 421.4 345 62.0
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.9e-112 407.9 314 66.2
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.2e-97 360.9 291 63.6
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 1.8e-96 357.1 235 72.8
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 3.1e-96 356.3 406 45.1
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 1.5e-95 354.0 223 77.1
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 7.6e-95 351.7 200 81.5
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 1.3e-94 350.9 498 39.6
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 1.4e-93 347.4 429 44.3
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-93 346.3 200 80.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.1e-90 337.8 407 44.7
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 4.0e-80 302.8 225 66.2
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 1.9e-77 293.9 243 60.5
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 8.4e-70 268.5 178 70.2
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 2.1e-65 253.8 208 66.3
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 1.5e-63 247.7 179 69.3
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.5e-63 247.7 155 72.9
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.4e-63 246.5 186 65.6
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 5.0e-54 216.1 129 76.7
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 7.2e-53 212.2 124 78.2
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.2e-52 211.5 156 68.6
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.6e-52 209.5 156 69.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.7e-49 199.9 121 73.6
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.4e-48 197.2 220 50.0
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.1e-45 188.3 127 69.3
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.3e-43 180.6 173 53.8
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.8e-38 163.3 124 62.1
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-37 161.8 336 33.3
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.9e-37 161.0 337 33.2
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 8.2e-33 145.6 89 77.5
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 5.3e-32 142.9 88 75.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.2e-29 133.3 128 52.3
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.1e-26 125.2 71 83.1
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 5.7e-18 96.3 87 50.6
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 7.5e-18 95.9 59 76.3
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 9.8e-18 95.5 87 51.7
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 2.8e-17 94.0 75 61.3
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-11 75.5 60 66.7
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 4.9e-09 66.6 62 56.5
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 4.5e-07 60.1 134 30.6


User provided reference genes

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