Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020954 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.5e-86 322.8 156 100.0
CSS0000627 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.9e-81 305.8 155 96.1
CSS0027541 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D004251 1.9e-81 305.8 155 96.1
Dinv28678 Davidia involucrata HOM05D002034 ORTHO05D004251 1.5e-75 286.2 157 87.9
Actinidia23213 Actinidia chinensis HOM05D002034 ORTHO05D004251 2.6e-75 285.4 154 89.6
Rhsim13G0065900 Rhododendron simsii HOM05D002034 ORTHO05D004251 1.1e-73 280.0 154 87.7
TAR369G0522 Trochodendron aralioides HOM05D002034 ORTHO05D004251 8.7e-71 270.4 154 85.7
Hma1.2p1_0841F.1_g226850 Hydrangea macrophylla HOM05D002034 ORTHO05D004251 1.5e-70 269.6 158 84.2
TAR357G0005 Trochodendron aralioides HOM05D002034 ORTHO05D004251 4.0e-68 261.5 154 82.5
GSVIVG01024678001 Vitis vinifera HOM05D002034 ORTHO05D004251 1.2e-67 260.0 154 82.5
Lj6g0001278 Lotus japonicus HOM05D002034 ORTHO05D004251 2.6e-67 258.8 154 81.8
MD11G1065500 Malus domestica HOM05D002034 ORTHO05D004251 3.4e-67 258.5 155 80.0
TWI31G1212 Tripterygium wilfordii HOM05D002034 ORTHO05D004251 3.4e-67 258.5 154 81.2
COL.COLO4_11121 Corchorus olitorius HOM05D002034 ORTHO05D004251 1.7e-66 256.1 154 79.9
Prupe.6G051700 Prunus persica HOM05D002034 ORTHO05D004251 2.9e-66 255.4 155 79.4
QL01p039781 Quercus lobata HOM05D002034 ORTHO05D004251 2.9e-66 255.4 156 79.5
Cc01_g14670 Coffea canephora HOM05D002034 ORTHO05D004251 8.4e-66 253.8 155 79.4
CiPaw.13G072000 Carya illinoinensis HOM05D002034 ORTHO05D004251 4.2e-65 251.5 154 77.3
Ciclev10027766m.g Citrus clementina HOM05D002034 ORTHO05D004251 4.2e-65 251.5 155 78.1
Duzib168G1938 Durio zibethinus HOM05D002034 ORTHO05D004251 4.2e-65 251.5 154 77.3
Nn2g10970 Nelumbo nucifera HOM05D002034 ORTHO05D004251 7.1e-65 250.8 157 76.4
Oeu023980.1 Olea europaea HOM05D002034 ORTHO05D004251 7.1e-65 250.8 155 79.4
Thecc.09G354800 Theobroma cacao HOM05D002034 ORTHO05D004251 1.6e-64 249.6 154 79.2
Haze_24388 Corylus avellana HOM05D002034 ORTHO05D004251 2.7e-64 248.8 154 76.6
Lalb_Chr04g0252081 Lupinus albus HOM05D002034 ORTHO05D004251 3.5e-64 248.4 154 77.9
Ca_14990_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 4.6e-64 248.1 155 79.4
Ca_30101_v3 Cicer arietinum L. HOM05D002034 ORTHO05D004251 4.6e-64 248.1 155 79.4
VMungo0540G1016 Vigna mungo HOM05D002034 ORTHO05D004251 4.6e-64 248.1 153 78.4
Cpa.g.sc2.386 Carica papaya HOM05D002034 ORTHO05D004251 7.8e-64 247.3 155 78.1
Duzib150G0116 Durio zibethinus HOM05D002034 ORTHO05D004251 7.8e-64 247.3 155 77.4
Gohir.D03G141700 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.8e-64 247.3 154 77.9
Gorai.003G148700 Gossypium raimondii HOM05D002034 ORTHO05D004251 7.8e-64 247.3 154 77.9
Gohir.A13G234000 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.0e-63 246.9 154 78.6
Lalb_Chr15g0083131 Lupinus albus HOM05D002034 ORTHO05D004251 1.0e-63 246.9 153 79.7
Phvul.006G072400 Phaseolus vulgaris HOM05D002034 ORTHO05D004251 1.3e-63 246.5 150 79.3
Psat5g155480 Pisum sativum HOM05D002034 ORTHO05D004251 1.7e-63 246.1 154 76.6
CsaV3_1G036460 Cucumis sativus L. HOM05D002034 ORTHO05D004251 5.1e-63 244.6 155 72.3
Potri.009G076000 Populus trichocarpa HOM05D002034 ORTHO05D004251 8.7e-63 243.8 154 76.0
CAN.G1095.17 Capsicum annuum HOM05D002034 ORTHO05D004251 1.1e-62 243.4 156 75.6
CANSAT54G3012 Cannabis sativa HOM05D002034 ORTHO05D004251 3.3e-62 241.9 155 78.1
TPR.G32915 Trifolium pratense HOM05D002034 ORTHO05D004251 4.3e-62 241.5 154 76.0
Eucgr.B02225 Eucalyptus grandis HOM05D002034 ORTHO05D004251 5.6e-62 241.1 155 74.8
Gorai.013G270500 Gossypium raimondii HOM05D002034 ORTHO05D004251 5.6e-62 241.1 154 76.6
Aa31LG11G290 Aethionema arabicum HOM05D002034 ORTHO05D004251 7.3e-62 240.7 154 75.3
Gohir.D13G239600 Gossypium hirsutum HOM05D002034 ORTHO05D004251 7.3e-62 240.7 154 76.6
Peaxi162Scf00808g00111 Petunia axillaris HOM05D002034 ORTHO05D004251 7.3e-62 240.7 155 76.1
Glyma.18G058700 Glycine max HOM05D002034 ORTHO05D004251 9.6e-62 240.4 154 77.9
RcHm_v2.0_Chr5g0070931 Rosa chinensis HOM05D002034 ORTHO05D004251 1.6e-61 239.6 155 76.1
Thhalv10012586m.g Eutrema salsugineum HOM05D002034 ORTHO05D004251 2.1e-61 239.2 154 75.3
SGA_v2.0_scaffold62G21324 Striga asiatica HOM05D002034 ORTHO05D004251 2.8e-61 238.8 153 76.5
Manes.02G215950 Manihot esculenta HOM05D002034 ORTHO05D004251 3.6e-61 238.4 153 75.8
Medtr3g465600 Medicago truncatula HOM05D002034 ORTHO05D004251 4.8e-61 238.0 154 75.3
THA.LOC104799388 Tarenaya hassleriana HOM05D002034 ORTHO05D004251 4.8e-61 238.0 154 74.0
arahy.Tifrunner.gnm1.ann1.RZ6BDN Arachis hypogaea HOM05D002034 ORTHO05D004251 6.2e-61 237.7 152 75.0
Carub.0008s1910 Capsella rubella HOM05D002034 ORTHO05D004251 1.1e-60 236.9 154 74.7
Sopen06g033580 Solanum pennellii HOM05D002034 ORTHO05D004251 1.1e-60 236.9 156 73.1
Sed0002046 Sechium edule HOM05D002034 ORTHO05D004251 1.8e-60 236.1 155 72.9
Sc12g0000270 Simmondsia chinensis HOM05D002034 ORTHO05D004251 1.8e-60 236.1 154 74.0
Atru.chr3.4154 Acer truncatum HOM05D002034 ORTHO05D004251 2.4e-60 235.7 155 75.5
Peaxi162Scf00390g00823 Petunia axillaris HOM05D002034 ORTHO05D004251 3.1e-60 235.3 157 73.9
Solyc06g082200.4 Solanum lycopersicum HOM05D002034 ORTHO05D004251 3.1e-60 235.3 156 72.4
Aqoxy2G00822 Aquilegia oxysepala HOM05D002034 ORTHO05D004251 4.0e-60 235.0 154 72.1
Glyma.11G165900 Glycine max HOM05D002034 ORTHO05D004251 5.3e-60 234.6 155 77.4
PGR102G2830 Punica granatum HOM05D002034 ORTHO05D004251 5.3e-60 234.6 152 75.7
Sp6g20200 Schrenkiella parvula HOM05D002034 ORTHO05D004251 5.3e-60 234.6 152 75.7
Migut.F01663 Erythranthe guttata HOM05D002034 ORTHO05D004251 9.0e-60 233.8 151 74.2
AT5G58510 Arabidopsis thaliana HOM05D002034 ORTHO05D004251 1.2e-59 233.4 154 73.4
CARHR272340 Cardamine hirsuta HOM05D002034 ORTHO05D004251 1.2e-59 233.4 152 74.3
arahy.Tifrunner.gnm1.ann1.H18R60 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.5e-59 233.0 154 72.1
arahy.Tifrunner.gnm1.ann1.WA30K5 Arachis hypogaea HOM05D002034 ORTHO05D004251 1.5e-59 233.0 153 74.5
HanXRQChr08g0229181 Helianthus annuus HOM05D002034 ORTHO05D004251 1.5e-59 233.0 150 72.7
AL8G34750 Arabidopsis lyrata HOM05D002034 ORTHO05D004251 2.0e-59 232.6 154 73.4
BolC3t13874H Brassica oleracea HOM05D002034 ORTHO05D004251 2.0e-59 232.6 152 73.7
MSTRG.9115 Avicennia marina HOM05D002034 ORTHO05D004251 3.4e-59 231.9 148 76.4
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.4e-59 231.9 152 73.0
BolC9t57903H Brassica oleracea HOM05D002034 ORTHO05D004251 3.4e-59 231.9 152 73.0
C09p50470 Brassica napus HOM05D002034 ORTHO05D004251 5.8e-59 231.1 152 73.0
BraA10t43651Z Brassica rapa HOM05D002034 ORTHO05D004251 5.8e-59 231.1 152 73.0
Lsat_1_v5_gn_9_18521 Lactuca sativa HOM05D002034 ORTHO05D004251 7.6e-59 230.7 158 69.0
BcaB01g04520 Brassica carinata HOM05D002034 ORTHO05D004251 9.9e-59 230.3 152 71.7
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 9.9e-59 230.3 152 73.0
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 9.9e-59 230.3 152 73.0
Nitab4.5_0004155g0040 Nicotiana tabacum HOM05D002034 ORTHO05D004251 2.2e-58 229.2 153 72.5
ECA247G1661 Erigeron canadensis HOM05D002034 ORTHO05D004251 2.9e-58 228.8 150 71.3
FvH4_3g39400 Fragaria vesca HOM05D002034 ORTHO05D004251 2.9e-58 228.8 155 72.3
FAN11G3897 Fragaria x ananassa HOM05D002034 ORTHO05D004251 2.9e-58 228.8 155 72.3
arahy.Tifrunner.gnm1.ann1.Z7E5WK Arachis hypogaea HOM05D002034 ORTHO05D004251 3.8e-58 228.4 155 71.6
MELO3C020522.2 Cucumis melo HOM05D002034 ORTHO05D004251 3.8e-58 228.4 184 60.9
MSTRG.8115 Avicennia marina HOM05D002034 ORTHO05D004251 4.9e-58 228.0 153 72.5
Cfa011748 Carpinus fangiana HOM05D002034 ORTHO05D004251 6.4e-58 227.6 154 71.4
DCAR_018219 Daucus carota HOM05D002034 ORTHO05D004251 1.4e-57 226.5 152 73.0
FAN25G3060 Fragaria x ananassa HOM05D002034 ORTHO05D004251 1.4e-57 226.5 155 71.6
ATR0174G009 Amborella trichopoda HOM05D002034 ORTHO05D004251 2.4e-57 225.7 154 68.8
PSO339G3538 Papaver somniferum HOM05D002034 ORTHO05D004251 3.2e-57 225.3 150 70.7
Nitab4.5_0006148g0070 Nicotiana tabacum HOM05D002034 ORTHO05D004251 1.2e-56 223.4 153 71.2
FAN16G1479 Fragaria x ananassa HOM05D002034 ORTHO05D004251 4.6e-56 221.5 155 71.0
PSO801G0069 Papaver somniferum HOM05D002034 ORTHO05D004251 7.9e-56 220.7 150 70.7
BcaB08g36187 Brassica carinata HOM05D002034 ORTHO05D004251 1.0e-55 220.3 152 71.7
ClCG03G000460 Citrullus lanatus HOM05D002034 ORTHO05D004251 1.0e-55 220.3 144 72.2
PGSC0003DMG400030372 Solanum tuberosum HOM05D002034 ORTHO05D004251 1.3e-55 219.9 133 76.7
EL10Ac7g15893 Beta vulgaris HOM05D002034 ORTHO05D004251 1.1e-54 216.9 150 70.0
AUR62036251 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.1e-54 216.9 156 67.9
Os03g0295700 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D004251 3.1e-52 208.8 157 61.1
Zm00001eb396860 Zea mays HOM05D002034 ORTHO05D004251 2.0e-51 206.1 155 61.3
HPP92_012001 Vanilla planifolia HOM05D002034 ORTHO05D004251 3.4e-51 205.3 152 65.1
AUR62009695 Chenopodium quinoa HOM05D002034 ORTHO05D004251 1.7e-50 203.0 189 56.6
unitig_736.g22533 Utricularia gibba HOM05D002034 ORTHO05D004251 4.9e-50 201.4 158 63.3
SEGI_06649 Sequoiadendron giganteum HOM05D002034 ORTHO05D004251 9.3e-49 197.2 149 63.8
Hund18961 Selenicereus undatus HOM05D002034 ORTHO05D004251 3.5e-48 195.3 173 59.5
CDE08G0674 Ceratophyllum demersum HOM05D002034 ORTHO05D004251 1.7e-42 176.4 155 61.9
vmacro02934 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 1.7e-42 176.4 88 93.2
AUR62036252 Chenopodium quinoa HOM05D002034 ORTHO05D004251 5.1e-39 164.9 156 57.1
Sabra09G0057900 Salix brachista HOM05D002034 ORTHO05D004251 1.5e-38 163.3 203 48.8
Ah.15g096250 Amaranthus hybridus HOM05D002034 ORTHO05D004251 5.9e-35 151.4 109 65.1
HPP92_012023 Vanilla planifolia HOM05D002034 ORTHO05D004251 1.1e-33 147.1 119 63.0
SMO141G0130 Selaginella moellendorffii HOM05D002034 ORTHO05D004251 3.2e-33 145.6 146 50.7
Gohir.A03G026800 Gossypium hirsutum HOM05D002034 ORTHO05D004251 1.4e-31 140.2 152 52.0
Mapoly0006s0080 Marchantia polymorpha HOM05D002034 ORTHO05D004251 5.1e-31 138.3 145 48.3
Pp3c22_21020 Physcomitrium patens HOM05D002034 ORTHO05D004251 8.8e-31 137.5 151 47.0
AagrBONN_evm.TU.Sc2ySwM_228.2653 Anthoceros agrestis HOM05D002034 ORTHO05D004251 2.8e-29 132.5 147 42.9
Pp3c20_20280 Physcomitrium patens HOM05D002034 ORTHO05D004251 4.8e-29 131.7 148 45.9
Pp3c20_20284 Physcomitrium patens HOM05D002034 ORTHO05D004251 4.8e-29 131.7 148 45.9
Nitab4.5_0001115g0080 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.1e-28 128.6 103 68.9
CBR_g32390 Chara braunii HOM05D002034 ORTHO05D004251 8.5e-26 120.9 152 45.4
SHI19193 Sapria himalayana HOM05D002034 ORTHO05D004251 2.1e-24 116.3 226 34.1
vmacro02935 Vaccinium macrocarpon HOM05D002034 ORTHO05D004251 4.7e-24 115.2 84 71.4
Pp3c17_9080 Physcomitrium patens HOM05D002034 ORTHO05D004251 1.5e-22 110.2 106 53.8
Ah.15g096260 Amaranthus hybridus HOM05D002034 ORTHO05D004251 6.1e-16 88.2 69 66.7
Actinidia14800 Actinidia chinensis HOM05D002034 ORTHO05D004251 1.3e-13 80.5 84 57.1
Nitab4.5_0001469g0010 Nicotiana tabacum HOM05D002034 ORTHO05D004251 4.5e-11 72.0 35 82.9
MCO07G130 Micromonas commoda HOM05D002034 ORTHO05D004251 8.5e-10 67.8 75 46.7
Manes.03G131600 Manihot esculenta HOM05D001434 ORTHO05D004586 6.7e-07 58.2 122 32.0
SMO358G0516 Selaginella moellendorffii HOM05D001434 ORTHO05D004586 6.7e-07 58.2 88 35.2
Cre04.g228000 Chlamydomonas reinhardtii HOM05D002034 ORTHO05D004251 8.8e-07 57.8 51 54.9


User provided reference genes

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