Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020952 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 0.0e+00 1345.9 786 100.0
CSS0029586 Camellia sinensis var. sinensis HOM05D006481 ORTHO05D008160 0.0e+00 1318.1 786 98.5
Dinv15788 Davidia involucrata HOM05D006481 ORTHO05D008160 1.6e-234 816.6 887 62.7
Dinv42219 Davidia involucrata HOM05D006481 ORTHO05D008160 7.4e-219 764.6 875 60.0
Actinidia34372 Actinidia chinensis HOM05D006481 ORTHO05D008160 4.2e-206 722.2 886 58.1
TAR376G0872 Trochodendron aralioides HOM05D006481 ORTHO05D008160 9.4e-190 667.9 823 56.5
Manes.10G058310 Manihot esculenta HOM05D006481 ORTHO05D008160 1.4e-188 664.1 870 53.9
Haze_10252 Corylus avellana HOM05D006481 ORTHO05D008160 5.5e-182 642.1 951 48.6
Cfa004657 Carpinus fangiana HOM05D006481 ORTHO05D008160 6.1e-181 638.6 948 46.0
CiPaw.05G015400 Carya illinoinensis HOM05D006481 ORTHO05D008160 3.8e-175 619.4 855 50.1
Prupe.8G140600 Prunus persica HOM05D006481 ORTHO05D008160 1.1e-174 617.8 856 52.7
QL11p031947 Quercus lobata HOM05D006481 ORTHO05D008160 2.0e-168 597.0 870 52.3
Thecc.02G113600 Theobroma cacao HOM05D006481 ORTHO05D008160 7.7e-168 595.1 874 53.1
TWI14G1262 Tripterygium wilfordii HOM05D006481 ORTHO05D008160 7.7e-168 595.1 887 48.6
vmacro01976 Vaccinium macrocarpon HOM05D006481 ORTHO05D008160 7.7e-168 595.1 813 53.6
Lj5A217G88 Lonicera japonica HOM05D006481 ORTHO05D008160 4.7e-165 585.9 878 51.3
Rhsim11G0154700 Rhododendron simsii HOM05D006481 ORTHO05D008160 1.6e-160 570.9 828 51.7
Gohir.D12G020600 Gossypium hirsutum HOM05D006481 ORTHO05D008160 2.0e-160 570.5 851 49.7
RhsimUnG0125900 Rhododendron simsii HOM05D006481 ORTHO05D008160 3.5e-160 569.7 922 46.1
MD05G1096200 Malus domestica HOM05D006481 ORTHO05D008160 1.0e-159 568.2 899 50.3
Nitab4.5_0004685g0050 Nicotiana tabacum HOM05D006481 ORTHO05D008160 8.6e-159 565.1 857 50.4
COL.COLO4_32543 Corchorus olitorius HOM05D006481 ORTHO05D008160 1.5e-158 564.3 846 50.5
Nitab4.5_0001105g0200 Nicotiana tabacum HOM05D006481 ORTHO05D008160 4.7e-157 559.3 842 51.2
Solyc01g107260.4 Solanum lycopersicum HOM05D006481 ORTHO05D008160 1.5e-155 554.3 886 49.2
Sopen01g049510 Solanum pennellii HOM05D006481 ORTHO05D008160 2.6e-155 553.5 884 49.1
Duzib132G1015 Durio zibethinus HOM05D006481 ORTHO05D008160 7.5e-155 552.0 829 50.7
Gorai.008G021000 Gossypium raimondii HOM05D006481 ORTHO05D008160 1.4e-153 547.7 915 46.0
Cc02_g30880 Coffea canephora HOM05D006481 ORTHO05D008160 3.2e-153 546.6 847 49.8
DCAR_021965 Daucus carota HOM05D006481 ORTHO05D008160 3.5e-152 543.1 942 44.3
RcHm_v2.0_Chr6g0252931 Rosa chinensis HOM05D006481 ORTHO05D008160 7.3e-150 535.4 827 49.8
Gohir.A12G020400 Gossypium hirsutum HOM05D006481 ORTHO05D008160 3.4e-147 526.6 862 48.6
Oeu021369.1 Olea europaea HOM05D006481 ORTHO05D008160 7.5e-147 525.4 803 48.2
CAN.G606.42 Capsicum annuum HOM05D006481 ORTHO05D008160 3.7e-146 523.1 937 44.5
Lj5g0022753 Lotus japonicus HOM05D006481 ORTHO05D008160 1.2e-144 518.1 786 52.0
Potri.001G296700 Populus trichocarpa HOM05D006481 ORTHO05D008160 4.6e-144 516.2 869 44.9
FAN15G2146 Fragaria x ananassa HOM05D006481 ORTHO05D008160 1.3e-143 514.6 861 48.0
MELO3C017986.2 Cucumis melo HOM05D006481 ORTHO05D008160 2.3e-143 513.8 821 49.0
MSTRG.16692 Avicennia marina HOM05D006481 ORTHO05D008160 1.5e-142 511.1 899 45.6
FvH4_2g03900 Fragaria vesca HOM05D006481 ORTHO05D008160 1.5e-142 511.1 828 49.0
arahy.Tifrunner.gnm1.ann1.RQ9967 Arachis hypogaea HOM05D006481 ORTHO05D008160 1.9e-142 510.8 760 51.4
Cpa.g.sc106.79 Carica papaya HOM05D006481 ORTHO05D008160 7.3e-142 508.8 1039 41.7
Medtr1g106795 Medicago truncatula HOM05D006481 ORTHO05D008160 9.5e-142 508.4 788 49.5
Potri.009G090900 Populus trichocarpa HOM05D006481 ORTHO05D008160 1.6e-141 507.7 823 46.1
FAN27G2785 Fragaria x ananassa HOM05D006481 ORTHO05D008160 8.1e-141 505.4 832 48.1
Ca_11047_v3 Cicer arietinum L. HOM05D006481 ORTHO05D008160 1.8e-140 504.2 790 51.8
arahy.Tifrunner.gnm1.ann1.IH69Y8 Arachis hypogaea HOM05D006481 ORTHO05D008160 6.8e-140 502.3 758 52.6
Lalb_Chr02g0145111 Lupinus albus HOM05D006481 ORTHO05D008160 1.7e-138 497.7 850 47.3
PSO675G3182 Papaver somniferum HOM05D006481 ORTHO05D008160 1.9e-137 494.2 867 45.7
CsaV3_4G000490 Cucumis sativus L. HOM05D006481 ORTHO05D008160 2.1e-136 490.7 823 47.5
PSO541G1903 Papaver somniferum HOM05D006481 ORTHO05D008160 5.1e-135 486.1 865 45.5
Ah.14g085520 Amaranthus hybridus HOM05D006481 ORTHO05D008160 1.5e-134 484.6 832 46.6
TPR.G27130 Trifolium pratense HOM05D006481 ORTHO05D008160 1.8e-132 477.6 787 50.8
Aqoxy6G02732 Aquilegia oxysepala HOM05D006481 ORTHO05D008160 4.1e-129 466.5 876 45.0
AUR62031332 Chenopodium quinoa HOM05D006481 ORTHO05D008160 4.1e-129 466.5 737 47.6
EL10Ac8g19363 Beta vulgaris HOM05D006481 ORTHO05D008160 3.5e-128 463.4 801 47.1
AUR62027350 Chenopodium quinoa HOM05D006481 ORTHO05D008160 5.1e-127 459.5 750 45.9
Sabra09G0070200 Salix brachista HOM05D006481 ORTHO05D008160 1.1e-126 458.4 848 44.6
Sed0008985 Sechium edule HOM05D006481 ORTHO05D008160 1.1e-126 458.4 883 43.4
Glyma.20G132200 Glycine max HOM05D006481 ORTHO05D008160 1.5e-126 458.0 881 43.5
SalBow6G0734 Salvia bowleyana HOM05D006481 ORTHO05D008160 5.6e-126 456.1 834 44.0
Ciclev10027845m.g Citrus clementina HOM05D006481 ORTHO05D008160 1.2e-123 448.4 815 41.5
Migut.B00421 Erythranthe guttata HOM05D006481 ORTHO05D008160 1.2e-123 448.4 787 42.9
Phvul.007G043300 Phaseolus vulgaris HOM05D006481 ORTHO05D008160 8.4e-122 442.2 846 46.6
VMungo0720G0067 Vigna mungo HOM05D006481 ORTHO05D008160 1.2e-120 438.3 804 46.8
ClCG10G010570 Citrullus lanatus HOM05D006481 ORTHO05D008160 6.0e-120 436.0 682 45.3
PGSC0003DMG400025848 Solanum tuberosum HOM05D006481 ORTHO05D008160 1.1e-118 431.8 861 44.7
Peaxi162Scf00016g02732 Petunia axillaris HOM05D006481 ORTHO05D008160 9.6e-118 428.7 746 50.0
unitig_744.g24217 Utricularia gibba HOM05D006481 ORTHO05D008160 1.6e-117 427.9 811 41.2
GSVIVG01037865001 Vitis vinifera HOM05D006481 ORTHO05D008160 1.1e-116 425.2 775 41.3
ECA234G0568 Erigeron canadensis HOM05D006481 ORTHO05D008160 1.7e-114 417.9 780 43.8
Atru.BG.62.p Acer truncatum HOM05D006481 ORTHO05D008160 2.2e-114 417.5 488 54.5
Sabra16G0185800 Salix brachista HOM05D006481 ORTHO05D008160 7.1e-113 412.5 821 42.5
THA.LOC104825834 Tarenaya hassleriana HOM05D006481 ORTHO05D008160 2.1e-109 401.0 882 41.3
Psat6g216240 Pisum sativum HOM05D006481 ORTHO05D008160 3.8e-106 390.2 769 43.6
Sp1g36750 Schrenkiella parvula HOM05D006481 ORTHO05D008160 3.2e-105 387.1 822 42.5
Lsat_1_v5_gn_5_114361 Lactuca sativa HOM05D006481 ORTHO05D008160 3.5e-104 383.6 433 54.7
SGA_v2.0_scaffold225G43011 Striga asiatica HOM05D006481 ORTHO05D008160 3.3e-102 377.1 810 42.2
Aa31LG10G4220 Aethionema arabicum HOM05D006481 ORTHO05D008160 9.6e-102 375.6 792 40.8
Carub.0001s3908 Capsella rubella HOM05D006481 ORTHO05D008160 3.7e-101 373.6 857 40.5
AL1G57410 Arabidopsis lyrata HOM05D006481 ORTHO05D008160 3.1e-100 370.5 810 41.7
HanXRQChr16g0514441 Helianthus annuus HOM05D006481 ORTHO05D008160 1.2e-99 368.6 350 60.6
Eucgr.I01079 Eucalyptus grandis HOM05D006481 ORTHO05D008160 4.5e-99 366.7 726 43.9
AT1G49870 Arabidopsis thaliana HOM05D006481 ORTHO05D008160 5.8e-99 366.3 788 41.6
Thhalv10011233m.g Eutrema salsugineum HOM05D006481 ORTHO05D008160 1.3e-98 365.2 818 38.5
A08p03520 Brassica napus HOM05D006481 ORTHO05D008160 3.8e-98 363.6 797 42.3
ATR0030G005 Amborella trichopoda HOM05D006481 ORTHO05D008160 1.4e-97 361.7 868 40.7
BcaB04g17289 Brassica carinata HOM05D006481 ORTHO05D008160 3.5e-96 357.1 667 44.2
BolC8t47171H Brassica oleracea HOM05D006481 ORTHO05D008160 2.3e-95 354.4 796 41.5
CARHR039920 Cardamine hirsuta HOM05D006481 ORTHO05D008160 5.7e-94 349.7 748 43.3
TAR628G0609 Trochodendron aralioides HOM05D006481 ORTHO05D008160 2.8e-93 347.4 540 45.7
BraA08t32385Z Brassica rapa HOM05D006481 ORTHO05D008160 1.4e-92 345.1 796 41.6
C08p03680 Brassica napus HOM05D006481 ORTHO05D008160 2.1e-88 331.3 802 39.3
Os03g0604600 Oryza sativa ssp. japonica HOM05D006481 ORTHO05D008160 1.5e-83 315.1 652 39.3
HPP92_017760 Vanilla planifolia HOM05D006481 ORTHO05D008160 9.4e-81 305.8 612 40.5
Zm00001eb050130 Zea mays HOM05D006481 ORTHO05D008160 3.9e-79 300.4 869 34.4
Sc14g0002570 Simmondsia chinensis HOM05D006481 ORTHO05D008160 4.8e-61 240.4 627 40.5
CDE04G1272 Ceratophyllum demersum HOM05D006481 ORTHO05D008160 2.8e-53 214.5 321 47.4
SEGI_11188 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 8.3e-53 213.0 647 33.8
SEGI_37018 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 8.3e-53 213.0 647 33.8
TAR628G0206 Trochodendron aralioides HOM05D006481 ORTHO05D008160 1.0e-50 206.1 317 56.2
MD10G1102400 Malus domestica HOM05D006481 ORTHO05D008160 3.5e-43 181.0 149 67.8
FAN20G1292 Fragaria x ananassa HOM05D006481 ORTHO05D008160 2.5e-41 174.9 526 39.4
SEGI_25924 Sequoiadendron giganteum HOM05D006481 ORTHO05D008160 1.5e-38 165.6 877 26.8
Pp3c18_18840 Physcomitrium patens HOM05D006481 ORTHO05D008160 4.6e-35 154.1 361 38.8
EL10Ac6g13964 Beta vulgaris HOM05D006481 ORTHO05D008160 1.0e-31 142.9 195 51.3
SMO196G0099 Selaginella moellendorffii HOM05D006481 ORTHO05D008160 5.2e-31 140.6 357 33.6
SHI05066 Sapria himalayana HOM05D006481 ORTHO05D008160 1.2e-27 129.4 130 56.9
Hma1.2p1_1361F.1_g278150 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 2.1e-24 118.6 250 42.4
MD10G1102500 Malus domestica HOM05D006481 ORTHO05D008160 8.9e-23 113.2 140 50.7
Hma1.2p1_0000F.1_g001000 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 4.4e-22 110.9 419 29.8
CBR_g49330 Chara braunii HOM05D006481 ORTHO05D008160 6.4e-21 107.1 164 43.3
Atru.chr5.2411 Acer truncatum HOM05D006481 ORTHO05D008160 1.9e-17 95.5 60 75.0
RcHm_v2.0_Chr6g0252961 Rosa chinensis HOM05D006481 ORTHO05D008160 5.2e-15 87.4 61 67.2
SHI05065 Sapria himalayana HOM05D006481 ORTHO05D008160 2.9e-13 81.6 94 54.3
Duzib052G0964 Durio zibethinus HOM05D006481 ORTHO05D008160 6.4e-13 80.5 110 51.8
Oeu039499.1 Olea europaea HOM05D006481 ORTHO05D008160 6.0e-11 73.9 169 45.6
Hma1.2p1_0883F.1_g232290 Hydrangea macrophylla HOM05D006481 ORTHO05D008160 7.8e-11 73.6 48 83.3
SGA_v2.0_scaffold4001G54416 Striga asiatica HOM05D006481 ORTHO05D008160 1.2e-08 66.2 336 27.1
BcaC05g27423 Brassica carinata HOM05D006481 ORTHO05D008160 2.4e-07 62.0 56 55.4


User provided reference genes

Program Settings