Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020951 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 0.0e+00 1094.7 525 100.0
CSS0020926 Camellia sinensis var. sinensis HOM05D004979 ORTHO05D006190 0.0e+00 1092.0 525 99.6
Actinidia22849 Actinidia chinensis HOM05D004979 ORTHO05D006190 1.3e-272 942.6 520 85.8
Rhsim01G0213000 Rhododendron simsii HOM05D004979 ORTHO05D006190 3.4e-268 927.9 525 85.0
Oeu061912.1 Olea europaea HOM05D004979 ORTHO05D006190 2.8e-262 908.3 524 80.5
Cc02_g36050 Coffea canephora HOM05D004979 ORTHO05D006190 1.6e-257 892.5 522 77.8
Cc02_g36100 Coffea canephora HOM05D004979 ORTHO05D006190 3.5e-257 891.3 522 77.8
MSTRG.16439 Avicennia marina HOM05D004979 ORTHO05D006190 2.3e-256 888.6 524 78.1
Migut.B00894 Erythranthe guttata HOM05D004979 ORTHO05D006190 6.8e-253 877.1 521 77.5
Dinv24526 Davidia involucrata HOM05D004979 ORTHO05D006190 6.0e-249 864.0 520 79.0
MD08G1246100 Malus domestica HOM05D004979 ORTHO05D006190 8.1e-246 853.6 514 77.4
Manes.08G106500 Manihot esculenta HOM05D004979 ORTHO05D006190 1.8e-245 852.4 518 76.6
RcHm_v2.0_Chr1g0332651 Rosa chinensis HOM05D004979 ORTHO05D006190 3.1e-245 851.7 518 75.9
Atru.chr12.1512 Acer truncatum HOM05D004979 ORTHO05D006190 2.6e-244 848.6 518 76.3
FAN01G0279 Fragaria x ananassa HOM05D004979 ORTHO05D006190 3.4e-244 848.2 516 76.2
PGSC0003DMG400001886 Solanum tuberosum HOM05D004979 ORTHO05D006190 2.9e-243 845.1 513 76.8
CAN.G756.6 Capsicum annuum HOM05D004979 ORTHO05D006190 6.4e-243 844.0 513 76.2
QL03p011287 Quercus lobata HOM05D004979 ORTHO05D006190 1.9e-242 842.4 527 74.6
PGR004G0062 Punica granatum HOM05D004979 ORTHO05D006190 3.2e-242 841.6 517 75.0
PGR117G0001 Punica granatum HOM05D004979 ORTHO05D006190 5.4e-242 840.9 520 75.0
EL10Ac8g20414 Beta vulgaris HOM05D004979 ORTHO05D006190 9.2e-242 840.1 522 73.6
MD15G1441300 Malus domestica HOM05D004979 ORTHO05D006190 9.2e-242 840.1 514 76.5
CiPaw.01G000500 Carya illinoinensis HOM05D004979 ORTHO05D006190 1.6e-241 839.3 520 76.5
Sed0004859 Sechium edule HOM05D004979 ORTHO05D006190 1.6e-241 839.3 520 75.8
Solyc04g055190.4 Solanum lycopersicum HOM05D004979 ORTHO05D006190 1.6e-241 839.3 513 76.0
Potri.013G000600 Populus trichocarpa HOM05D004979 ORTHO05D006190 2.1e-241 839.0 518 75.9
TPR.G18815 Trifolium pratense HOM05D004979 ORTHO05D006190 7.8e-241 837.0 519 73.8
FAN06G2997 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.3e-240 835.5 538 73.0
arahy.Tifrunner.gnm1.ann1.4I4LKP Arachis hypogaea HOM05D004979 ORTHO05D006190 6.6e-240 833.9 519 73.4
Ciclev10028175m.g Citrus clementina HOM05D004979 ORTHO05D006190 1.5e-239 832.8 519 74.8
Lalb_Chr04g0254641 Lupinus albus HOM05D004979 ORTHO05D006190 3.3e-239 831.6 519 72.8
Medtr1g110490 Medicago truncatula HOM05D004979 ORTHO05D006190 3.3e-239 831.6 526 72.6
TPR.G33173 Trifolium pratense HOM05D004979 ORTHO05D006190 4.3e-239 831.2 519 73.0
Aqoxy1G02435 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 7.3e-239 830.5 517 75.2
CANSAT56G2810 Cannabis sativa HOM05D004979 ORTHO05D006190 2.1e-238 828.9 513 75.0
TWI60G1029 Tripterygium wilfordii HOM05D004979 ORTHO05D006190 4.7e-238 827.8 514 74.3
CAN.G1715.7 Capsicum annuum HOM05D004979 ORTHO05D006190 1.1e-237 826.6 513 75.2
Psat6g226240 Pisum sativum HOM05D004979 ORTHO05D006190 1.1e-237 826.6 517 73.3
Glyma.10G273100 Glycine max HOM05D004979 ORTHO05D006190 1.8e-237 825.9 519 73.2
Thecc.05G331000 Theobroma cacao HOM05D004979 ORTHO05D006190 2.3e-237 825.5 517 74.3
vmacro19800 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 4.0e-237 824.7 696 62.2
MELO3C019579.2 Cucumis melo HOM05D004979 ORTHO05D006190 2.0e-236 822.4 518 74.7
CsaV3_6G013140 Cucumis sativus L. HOM05D004979 ORTHO05D006190 4.4e-236 821.2 518 75.1
Glyma.20G116900 Glycine max HOM05D004979 ORTHO05D006190 2.2e-235 818.9 519 72.3
Lj5g0020513 Lotus japonicus HOM05D004979 ORTHO05D006190 2.2e-235 818.9 513 73.5
AL1G67180 Arabidopsis lyrata HOM05D004979 ORTHO05D006190 3.7e-235 818.1 518 69.9
Sabra13G0000500 Salix brachista HOM05D004979 ORTHO05D006190 6.4e-235 817.4 532 72.7
ECA234G3247 Erigeron canadensis HOM05D004979 ORTHO05D006190 8.4e-235 817.0 498 74.9
Eucgr.I02672 Eucalyptus grandis HOM05D004979 ORTHO05D006190 1.1e-234 816.6 517 73.3
arahy.Tifrunner.gnm1.ann1.Q958TZ Arachis hypogaea HOM05D004979 ORTHO05D006190 7.8e-233 810.4 577 66.6
Thhalv10023409m.g Eutrema salsugineum HOM05D004979 ORTHO05D006190 7.8e-233 810.4 516 70.2
VMungo0720G1588 Vigna mungo HOM05D004979 ORTHO05D006190 1.3e-232 809.7 518 71.8
Hund05397 Selenicereus undatus HOM05D004979 ORTHO05D006190 1.7e-232 809.3 489 75.1
AT1G57600 Arabidopsis thaliana HOM05D004979 ORTHO05D006190 8.6e-232 807.0 516 69.0
PSO357G0276 Papaver somniferum HOM05D004979 ORTHO05D006190 1.1e-231 806.6 512 71.5
HanXRQChr11g0327151 Helianthus annuus HOM05D004979 ORTHO05D006190 1.5e-231 806.2 483 77.4
PSO170G1924 Papaver somniferum HOM05D004979 ORTHO05D006190 4.3e-231 804.7 512 71.3
CARHR054720 Cardamine hirsuta HOM05D004979 ORTHO05D006190 9.6e-231 803.5 516 69.6
Phvul.007G028500 Phaseolus vulgaris HOM05D004979 ORTHO05D006190 2.8e-230 802.0 518 71.6
THA.LOC104816839 Tarenaya hassleriana HOM05D004979 ORTHO05D006190 4.0e-229 798.1 514 70.0
Carub.0002s0703 Capsella rubella HOM05D004979 ORTHO05D006190 4.4e-228 794.7 519 68.4
vmacro22232 Vaccinium macrocarpon HOM05D004979 ORTHO05D006190 6.4e-227 790.8 554 72.4
Gohir.D13G003600 Gossypium hirsutum HOM05D004979 ORTHO05D006190 3.2e-226 788.5 514 70.8
Gohir.A13G003700 Gossypium hirsutum HOM05D004979 ORTHO05D006190 1.6e-225 786.2 514 70.4
BolC9t55284H Brassica oleracea HOM05D004979 ORTHO05D006190 2.1e-225 785.8 517 68.7
unitig_22.g6127 Utricularia gibba HOM05D004979 ORTHO05D006190 2.1e-225 785.8 563 65.9
Sp2g05910 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.5e-225 785.0 517 68.1
SpUn0028_0030 Schrenkiella parvula HOM05D004979 ORTHO05D006190 3.5e-225 785.0 517 68.1
Gorai.013G003500 Gossypium raimondii HOM05D004979 ORTHO05D006190 4.6e-225 784.6 515 70.9
BcaC04g22085 Brassica carinata HOM05D004979 ORTHO05D006190 1.0e-224 783.5 517 68.3
Nitab4.5_0000081g0190 Nicotiana tabacum HOM05D004979 ORTHO05D006190 1.0e-224 783.5 516 72.1
BraA09t37507Z Brassica rapa HOM05D004979 ORTHO05D006190 1.9e-223 779.2 517 67.7
BcaB07g31145 Brassica carinata HOM05D004979 ORTHO05D006190 7.3e-223 777.3 517 67.5
SGA_v2.0_scaffold279G46769 Striga asiatica HOM05D004979 ORTHO05D006190 1.6e-222 776.2 521 70.4
C09p23650 Brassica napus HOM05D004979 ORTHO05D006190 1.2e-220 770.0 541 65.2
Duzib114G0072 Durio zibethinus HOM05D004979 ORTHO05D006190 2.0e-220 769.2 510 71.8
Lj4g0015757 Lotus japonicus HOM05D004979 ORTHO05D006190 3.8e-219 765.0 469 74.2
A09p18870 Brassica napus HOM05D004979 ORTHO05D006190 8.4e-219 763.8 542 64.6
AUR62014845 Chenopodium quinoa HOM05D004979 ORTHO05D006190 1.4e-218 763.1 525 69.0
ATR0730G180 Amborella trichopoda HOM05D004979 ORTHO05D006190 2.5e-215 752.3 530 65.3
Os05g0144000 Oryza sativa ssp. japonica HOM05D004979 ORTHO05D006190 9.6e-215 750.4 516 66.3
Peaxi162Scf00212g00515 Petunia axillaris HOM05D004979 ORTHO05D006190 1.3e-214 750.0 517 70.6
Zm00001eb108680 Zea mays HOM05D004979 ORTHO05D006190 2.4e-213 745.7 516 66.1
Aa31LG2G11270 Aethionema arabicum HOM05D004979 ORTHO05D006190 2.0e-212 742.7 521 67.0
TAR636G2920 Trochodendron aralioides HOM05D004979 ORTHO05D006190 9.9e-212 740.3 441 79.1
SEGI_04903 Sequoiadendron giganteum HOM05D004979 ORTHO05D006190 9.0e-205 717.2 524 62.2
Lj9A238G55 Lonicera japonica HOM05D004979 ORTHO05D006190 2.2e-203 712.6 503 69.2
Sc05g0004380 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.1e-202 710.3 435 74.7
Haze_12430 Corylus avellana HOM05D004979 ORTHO05D006190 2.5e-202 709.1 585 62.1
FAN03G1290 Fragaria x ananassa HOM05D004979 ORTHO05D006190 2.3e-200 702.6 580 61.4
Lsat_1_v5_gn_5_7121 Lactuca sativa HOM05D004979 ORTHO05D006190 1.1e-197 693.7 500 68.2
Nitab4.5_0002303g0020 Nicotiana tabacum HOM05D004979 ORTHO05D006190 2.4e-197 692.6 516 65.5
FAN23G0202 Fragaria x ananassa HOM05D004979 ORTHO05D006190 6.9e-197 691.0 523 64.6
Prupe.1G583400 Prunus persica HOM05D004979 ORTHO05D006190 2.9e-195 685.6 402 78.6
FvH4_7g05560 Fragaria vesca HOM05D004979 ORTHO05D006190 3.7e-190 668.7 393 77.1
HPP92_023772 Vanilla planifolia HOM05D004979 ORTHO05D006190 2.5e-178 629.4 420 67.6
Nn7g38157 Nelumbo nucifera HOM05D004979 ORTHO05D006190 4.2e-178 628.6 490 63.1
GSVIVG01007211001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.2e-170 601.3 362 78.7
Mapoly0050s0014 Marchantia polymorpha HOM05D004979 ORTHO05D006190 2.1e-169 599.7 523 53.3
Rhsim04G0165200 Rhododendron simsii HOM05D004979 ORTHO05D006190 1.5e-167 593.6 358 81.0
Pp3c2_38270 Physcomitrium patens HOM05D004979 ORTHO05D006190 9.1e-165 584.3 531 52.5
SalBow5G4822 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.1e-162 577.4 334 79.6
GSVIVG01006954001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.7e-156 556.2 304 85.5
SMO145G0201 Selaginella moellendorffii HOM05D004979 ORTHO05D006190 6.5e-155 551.6 504 53.8
FAN10G2429 Fragaria x ananassa HOM05D004979 ORTHO05D006190 9.4e-154 547.7 516 55.6
DCAR_006591 Daucus carota HOM05D004979 ORTHO05D006190 2.2e-150 536.6 517 54.9
SalBow3G2171 Salvia bowleyana HOM05D004979 ORTHO05D006190 1.2e-148 530.8 350 72.0
Lj5C315T9 Lonicera japonica HOM05D004979 ORTHO05D006190 2.9e-142 509.6 286 83.6
CBR_g16989 Chara braunii HOM05D004979 ORTHO05D006190 7.8e-140 501.5 549 46.1
AagrBONN_evm.TU.Sc2ySwM_344.2018 Anthoceros agrestis HOM05D004979 ORTHO05D006190 3.4e-135 486.1 435 52.4
GSVIVG01002014001 Vitis vinifera HOM05D004979 ORTHO05D006190 4.3e-130 469.2 252 86.1
AUR62017041 Chenopodium quinoa HOM05D004979 ORTHO05D006190 3.1e-128 463.0 345 64.6
Hma1.2p1_0759F.1_g213770 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.2e-117 426.4 231 86.1
Hma1.2p1_0759F.1_g213813 Hydrangea macrophylla HOM05D004979 ORTHO05D006190 3.2e-117 426.4 231 86.1
COL.COLO4_28214 Corchorus olitorius HOM05D004979 ORTHO05D006190 1.3e-115 421.0 286 70.6
Sopen04g025050 Solanum pennellii HOM05D004979 ORTHO05D006190 2.8e-113 413.3 230 80.4
Ca_17455_v3 Cicer arietinum L. HOM05D004979 ORTHO05D006190 1.2e-111 407.9 229 81.2
Dinv22420 Davidia involucrata HOM05D004979 ORTHO05D006190 6.2e-97 359.0 526 42.6
GSVIVG01007430001 Vitis vinifera HOM05D004979 ORTHO05D006190 7.6e-87 325.5 207 72.9
GSVIVG01007210001 Vitis vinifera HOM05D004979 ORTHO05D006190 1.0e-86 325.1 208 71.6
Cpa.g.sc46.4 Carica papaya HOM05D004979 ORTHO05D006190 1.3e-81 308.1 165 84.8
Cfa022844 Carpinus fangiana HOM05D004979 ORTHO05D006190 1.7e-78 297.7 560 33.4
Actinidia01657 Actinidia chinensis HOM05D004979 ORTHO05D006190 2.7e-76 290.4 365 50.4
Cre14.g617150 Chlamydomonas reinhardtii HOM05D004979 ORTHO05D006190 3.0e-75 287.0 538 34.8
Cpa.g.sc46.2 Carica papaya HOM05D004979 ORTHO05D006190 4.3e-74 283.1 240 59.6
MCO11G558 Micromonas commoda HOM05D004979 ORTHO05D006190 4.1e-72 276.6 490 36.7
PRCOL_00000039 Prasinoderma coloniale HOM05D004979 ORTHO05D006190 4.5e-71 273.1 514 35.0
CAN.G1164.35 Capsicum annuum HOM05D004979 ORTHO05D006190 8.5e-70 268.9 169 74.0
HanXRQChr14g0439781 Helianthus annuus HOM05D004979 ORTHO05D006190 6.1e-60 236.1 190 60.0
SHI20228 Sapria himalayana HOM05D004979 ORTHO05D006190 1.1e-53 215.3 262 46.2
DCAR_032148 Daucus carota HOM05D004979 ORTHO05D006190 9.1e-48 195.7 336 38.1
ClCG03G002030 Citrullus lanatus HOM05D004979 ORTHO05D006190 8.8e-43 179.1 161 58.4
Lsat_1_v5_gn_8_74721 Lactuca sativa HOM05D004979 ORTHO05D006190 3.6e-36 157.1 85 77.6
Actinidia27722 Actinidia chinensis HOM05D004979 ORTHO05D006190 7.5e-34 149.4 194 46.9
CDE04G1277 Ceratophyllum demersum HOM05D004979 ORTHO05D006190 5.4e-32 143.3 99 66.7
MBI07_g39750_MAGBIO Magnolia biondii HOM05D004979 ORTHO05D006190 1.2e-31 142.1 116 61.2
GSVIVG01004371001 Vitis vinifera HOM05D004979 ORTHO05D006190 2.7e-31 141.0 103 67.0
QL03p011256 Quercus lobata HOM05D004979 ORTHO05D006190 1.0e-30 139.0 79 83.5
Lsat_1_v5_gn_8_74741 Lactuca sativa HOM05D004979 ORTHO05D006190 1.3e-30 138.7 106 66.0
Rhsim05G0125000 Rhododendron simsii HOM05D004979 ORTHO05D006190 5.7e-26 123.2 270 35.2
SHI32754 Sapria himalayana HOM05D001374 ORTHO05D004296 2.9e-25 120.9 119 51.3
FAN19G1386 Fragaria x ananassa HOM05D004979 ORTHO05D006190 1.6e-23 115.2 94 59.6
Aqoxy2G02599 Aquilegia oxysepala HOM05D004979 ORTHO05D006190 5.0e-14 83.6 41 80.5
SHI20227 Sapria himalayana HOM05D004979 ORTHO05D006190 9.5e-13 79.3 51 68.6
AagrBONN_evm.TU.Sc2ySwM_117.715 Anthoceros agrestis HOM05D004979 ORTHO05D006190 6.2e-12 76.6 102 40.2
Sc05g0003730 Simmondsia chinensis HOM05D004979 ORTHO05D006190 1.5e-10 72.0 80 48.8
Medtr3g085120 Medicago truncatula HOM05D002545 ORTHO05D002335 5.8e-10 70.1 114 33.3
CBR_g72775 Chara braunii HOM05D004979 ORTHO05D132771 2.1e-07 61.6 141 31.9


User provided reference genes

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