Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0018468 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 4.6e-32 140.6 70 100.0
CSS0020950 Camellia sinensis var. sinensis HOM05D003832 ORTHO05D004365 4.6e-32 140.6 70 100.0
FAN22G0067 Fragaria x ananassa HOM05D003832 ORTHO05D004365 2.0e-11 72.0 49 69.4
vmacro20813 Vaccinium macrocarpon HOM05D003832 ORTHO05D004365 2.6e-11 71.6 51 76.5
RcHm_v2.0_Chr7g0180711 Rosa chinensis HOM05D003832 ORTHO05D004365 3.5e-11 71.2 44 72.7
RcHm_v2.0_Chr4g0399571 Rosa chinensis HOM05D003832 ORTHO05D004365 1.3e-10 69.3 42 76.2
Rhsim01G0116900 Rhododendron simsii HOM05D003832 ORTHO05D004365 2.2e-10 68.6 36 86.1
Dinv41177 Davidia involucrata HOM05D003832 ORTHO05D004365 2.9e-10 68.2 42 78.6
MD13G1241600 Malus domestica HOM05D003832 ORTHO05D004365 3.8e-10 67.8 42 73.8
QL07p021332 Quercus lobata HOM05D003832 ORTHO05D004365 3.8e-10 67.8 33 90.9
unitig_8.g4676 Utricularia gibba HOM05D003832 ORTHO05D004365 3.8e-10 67.8 34 91.2
Prupe.1G075100 Prunus persica HOM05D003832 ORTHO05D004365 6.5e-10 67.0 42 73.8
SalBow5G5556 Salvia bowleyana HOM05D003832 ORTHO05D004365 6.5e-10 67.0 36 77.8
PGSC0003DMG400022976 Solanum tuberosum HOM05D003832 ORTHO05D004365 6.5e-10 67.0 31 93.5
RcHm_v2.0_Chr4g0399541 Rosa chinensis HOM05D003832 ORTHO05D004365 8.5e-10 66.6 42 73.8
COL.COLO4_07061 Corchorus olitorius HOM05D003832 ORTHO05D004365 1.1e-09 66.2 36 80.6
FvH4_4g07280 Fragaria vesca HOM05D003832 ORTHO05D004365 1.1e-09 66.2 42 73.8
FAN17G1929 Fragaria x ananassa HOM05D003832 ORTHO05D004365 1.1e-09 66.2 42 73.8
MD16G1248500 Malus domestica HOM05D003832 ORTHO05D004365 1.1e-09 66.2 46 65.2
Duzib170G0568 Durio zibethinus HOM05D003832 ORTHO05D004365 2.5e-09 65.1 36 75.0
VMungo1215G0400 Vigna mungo HOM05D003832 ORTHO05D004365 2.5e-09 65.1 43 69.8
FvH4_5g15360 Fragaria vesca HOM05D003832 ORTHO05D004365 3.2e-09 64.7 42 71.4
FAN08G2334 Fragaria x ananassa HOM05D003832 ORTHO05D004365 3.2e-09 64.7 42 71.4
FAN18G2818 Fragaria x ananassa HOM05D003832 ORTHO05D004365 3.2e-09 64.7 42 71.4
Peaxi162Scf01038g00134 Petunia axillaris HOM05D003832 ORTHO05D004365 3.2e-09 64.7 36 80.6
CiPaw.07G197200 Carya illinoinensis HOM05D003832 ORTHO05D004365 4.2e-09 64.3 35 80.0
Oeu005620.2 Olea europaea HOM05D003832 ORTHO05D004365 4.2e-09 64.3 36 83.3
TAR626G0116 Trochodendron aralioides HOM05D003832 ORTHO05D004365 4.2e-09 64.3 47 68.1
GSVIVG01010856001 Vitis vinifera HOM05D003832 ORTHO05D004365 4.2e-09 64.3 49 67.3
VMungo1127G0216 Vigna mungo HOM05D003832 ORTHO05D004365 5.5e-09 63.9 43 67.4
Hma1.2p1_1326F.1_g275840 Hydrangea macrophylla HOM05D003832 ORTHO05D004365 7.2e-09 63.5 35 82.9
Sabra06G0056000 Salix brachista HOM05D003832 ORTHO05D004365 7.2e-09 63.5 50 64.0
CAN.G199.14 Capsicum annuum HOM05D003832 ORTHO05D004365 9.4e-09 63.2 29 96.6
Lalb_Chr13g0300001 Lupinus albus HOM05D003832 ORTHO05D004365 9.4e-09 63.2 41 70.7
Solyc07g008650.4 Solanum lycopersicum HOM05D003832 ORTHO05D004365 9.4e-09 63.2 29 96.6
Sopen07g004580 Solanum pennellii HOM05D003832 ORTHO05D004365 9.4e-09 63.2 29 96.6
Atru.chr12.1654 Acer truncatum HOM05D003832 ORTHO05D004365 1.2e-08 62.8 50 64.0
Ciclev10009594m.g Citrus clementina HOM05D003832 ORTHO05D004365 1.2e-08 62.8 35 80.0
Lj4g0009154 Lotus japonicus HOM05D003832 ORTHO05D004365 1.2e-08 62.8 41 70.7
Nn3g18876 Nelumbo nucifera HOM05D003832 ORTHO05D004365 1.6e-08 62.4 28 96.4
Nitab4.5_0000725g0040 Nicotiana tabacum HOM05D003832 ORTHO05D004365 1.6e-08 62.4 55 60.0
MSTRG.10440 Avicennia marina HOM05D003832 ORTHO05D004365 2.1e-08 62.0 35 74.3
Eucgr.E02147 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.1e-08 62.0 43 67.4
FAN04G3185 Fragaria x ananassa HOM05D003832 ORTHO05D004365 2.7e-08 61.6 42 69.0
FvH4_4g02103 Fragaria vesca HOM05D003832 ORTHO05D004365 3.6e-08 61.2 54 55.6
Gorai.012G114300 Gossypium raimondii HOM05D003832 ORTHO05D004365 4.7e-08 60.8 29 86.2
Oeu064557.2 Olea europaea HOM05D003832 ORTHO05D004365 6.1e-08 60.5 36 80.6
CANSAT80G0863 Cannabis sativa HOM05D003832 ORTHO05D004365 8.0e-08 60.1 34 76.5
CANSAT80G1489 Cannabis sativa HOM05D003832 ORTHO05D004365 8.0e-08 60.1 34 76.5
MBI19_g15084_MAGBIO Magnolia biondii HOM05D001562 ORTHO05D001437 8.0e-08 60.1 49 57.1
TWI63G0052 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 8.0e-08 60.1 28 92.9
Gohir.A04G090600 Gossypium hirsutum HOM05D003832 ORTHO05D004365 1.0e-07 59.7 29 82.8
Manes.02G069300 Manihot esculenta HOM05D003832 ORTHO05D004365 1.0e-07 59.7 49 61.2
SGA_v2.0_scaffold231G43408 Striga asiatica HOM05D003832 ORTHO05D004365 1.0e-07 59.7 30 83.3
MBI19_g45101_MAGBIO Magnolia biondii HOM05D003832 ORTHO05D004365 1.4e-07 59.3 49 57.1
Phvul.003G141300 Phaseolus vulgaris HOM05D003832 ORTHO05D004365 1.4e-07 59.3 42 66.7
Eucgr.E02911 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.8e-07 58.9 28 92.9
Nitab4.5_0000617g0240 Nicotiana tabacum HOM05D003832 ORTHO05D004365 1.8e-07 58.9 35 77.1
Nitab4.5_0010556g0010 Nicotiana tabacum HOM05D003832 ORTHO05D004365 1.8e-07 58.9 35 77.1
Zm00001eb054120 Zea mays HOM05D003832 ORTHO05D004365 1.8e-07 58.9 46 63.0
CARHR289090 Cardamine hirsuta HOM05D003832 ORTHO05D004365 2.3e-07 58.5 35 71.4
DCAR_018031 Daucus carota HOM05D003832 ORTHO05D004365 2.3e-07 58.5 32 78.1
Eucgr.E02530 Eucalyptus grandis HOM05D003832 ORTHO05D004365 2.3e-07 58.5 49 63.3
Potri.006G075300 Populus trichocarpa HOM05D003832 ORTHO05D004365 2.3e-07 58.5 49 61.2
THA.LOC104800261 Tarenaya hassleriana HOM05D003832 ORTHO05D004365 3.0e-07 58.2 31 80.6
Aa31LG3G7130 Aethionema arabicum HOM05D003832 ORTHO05D004365 5.2e-07 57.4 31 74.2
CDE04G0848 Ceratophyllum demersum HOM05D003832 ORTHO05D004365 5.2e-07 57.4 39 66.7
Glyma.13G100600 Glycine max HOM05D003832 ORTHO05D004365 5.2e-07 57.4 41 68.3
Medtr7g086830 Medicago truncatula HOM05D003832 ORTHO05D004365 5.2e-07 57.4 36 72.2
SGA_v2.0_scaffold14G07081 Striga asiatica HOM05D003832 ORTHO05D004365 5.2e-07 57.4 29 82.8
TPR.G31075 Trifolium pratense HOM05D003832 ORTHO05D004365 5.2e-07 57.4 36 72.2
Ah.01g002650 Amaranthus hybridus HOM05D003832 ORTHO05D004365 6.7e-07 57.0 28 85.7
BolC6t35394H Brassica oleracea HOM05D003832 ORTHO05D004365 6.7e-07 57.0 35 71.4
Ah.01g001730 Amaranthus hybridus HOM05D003832 ORTHO05D004365 8.8e-07 56.6 49 61.2
ClCG06G013620 Citrullus lanatus HOM05D003832 ORTHO05D004365 8.8e-07 56.6 28 85.7
Eucgr.E02171 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.8e-07 56.6 28 85.7
Eucgr.E02201 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.8e-07 56.6 28 85.7
Eucgr.E02232 Eucalyptus grandis HOM05D003832 ORTHO05D004365 8.8e-07 56.6 28 85.7
TPR.G17987 Trifolium pratense HOM05D003832 ORTHO05D004365 8.8e-07 56.6 36 72.2
TWI34G0584 Tripterygium wilfordii HOM05D003832 ORTHO05D004365 8.8e-07 56.6 32 78.1
Aqoxy2G00660 Aquilegia oxysepala HOM05D003832 ORTHO05D004365 1.2e-06 56.2 28 89.3
MELO3C017427.2 Cucumis melo HOM05D003832 ORTHO05D004365 1.2e-06 56.2 28 85.7
CsaV3_1G031890 Cucumis sativus L. HOM05D003832 ORTHO05D004365 1.2e-06 56.2 28 85.7
EL10Ac9g22760 Beta vulgaris HOM05D003832 ORTHO05D004365 1.5e-06 55.8 28 85.7
BcaC07g37168 Brassica carinata HOM05D003832 ORTHO05D004365 1.5e-06 55.8 42 64.3
BolC8t47358H Brassica oleracea HOM05D003832 ORTHO05D004365 1.5e-06 55.8 42 64.3
Migut.L01881 Erythranthe guttata HOM05D003832 ORTHO05D004365 1.5e-06 55.8 29 79.3
Eucgr.E02291 Eucalyptus grandis HOM05D003832 ORTHO05D004365 1.5e-06 55.8 43 60.5
Sed0004806 Sechium edule HOM05D003832 ORTHO05D004365 1.5e-06 55.8 27 88.9
ATR0307G033 Amborella trichopoda HOM05D003832 ORTHO05D004365 2.0e-06 55.5 28 78.6
Lj5A766G14 Lonicera japonica HOM05D003832 ORTHO05D004365 2.6e-06 55.1 28 78.6
PSO801G0378 Papaver somniferum HOM05D003832 ORTHO05D004365 2.6e-06 55.1 36 72.2
BraA08t32534Z Brassica rapa HOM05D003832 ORTHO05D004365 3.3e-06 54.7 42 61.9
AL1G54750 Arabidopsis lyrata HOM05D003832 ORTHO05D004365 4.4e-06 54.3 42 59.5
AT1G48175 Arabidopsis thaliana HOM05D003832 ORTHO05D004365 4.4e-06 54.3 30 76.7
BcaB04g17461 Brassica carinata HOM05D003832 ORTHO05D004365 4.4e-06 54.3 30 76.7
BcaC08g43013 Brassica carinata HOM05D003832 ORTHO05D004365 4.4e-06 54.3 38 60.5
C06p02680 Brassica napus HOM05D003832 ORTHO05D004365 4.4e-06 54.3 38 60.5
Carub.0001s3726 Capsella rubella HOM05D003832 ORTHO05D004365 4.4e-06 54.3 30 76.7
AUR62017542 Chenopodium quinoa HOM05D003832 ORTHO05D004365 4.4e-06 54.3 38 63.2
Thhalv10012316m.g Eutrema salsugineum HOM05D003832 ORTHO05D004365 4.4e-06 54.3 30 76.7
Glyma.17G059300 Glycine max HOM05D003832 ORTHO05D004365 4.4e-06 54.3 41 65.9
Sp7g33250 Schrenkiella parvula HOM05D003832 ORTHO05D004365 4.4e-06 54.3 30 76.7
A08p05170 Brassica napus HOM05D003832 ORTHO05D004365 5.7e-06 53.9 42 61.9
Cc02_g28290 Coffea canephora HOM05D003832 ORTHO05D004365 5.7e-06 53.9 29 79.3
Mapoly0047s0093 Marchantia polymorpha HOM05D003832 ORTHO05D004365 5.7e-06 53.9 42 52.4
Psat3g085920 Pisum sativum HOM05D003832 ORTHO05D004365 5.7e-06 53.9 35 68.6
A08p05010 Brassica napus HOM05D003832 ORTHO05D004365 7.5e-06 53.5 29 75.9
BraA08t32523Z Brassica rapa HOM05D003832 ORTHO05D004365 7.5e-06 53.5 29 75.9
Sp1g35130 Schrenkiella parvula HOM05D003832 ORTHO05D004365 7.5e-06 53.5 30 73.3
HPP92_008659 Vanilla planifolia HOM05D003832 ORTHO05D004365 9.7e-06 53.1 27 74.1


User provided reference genes

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