Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020947 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 7.4e-175 617.1 306 100.0
CSS0040705 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 4.7e-145 518.1 244 98.8
CSS0045207 Camellia sinensis var. sinensis HOM05D024541 ORTHO05D024705 5.3e-141 504.6 244 96.7
Hma1.2p1_0359F.1_g135000 Hydrangea macrophylla HOM05D000455 ORTHO05D000434 1.8e-24 117.5 216 32.4
Rhsim08G0168200 Rhododendron simsii HOM05D024541 ORTHO05D024705 1.9e-21 107.5 100 50.0
Dinv01242 Davidia involucrata HOM05D010363 ORTHO05D008693 9.4e-21 105.1 215 27.4
Rhsim11G0015600 Rhododendron simsii HOM05D011344 ORTHO05D016379 1.8e-19 100.9 132 37.1
SGA_v2.0_scaffold142G35697 Striga asiatica HOM05D017631 ORTHO05D009908 1.5e-18 97.8 250 27.6
SGA_v2.0_scaffold81G26003 Striga asiatica HOM05D017631 ORTHO05D009908 5.7e-18 95.9 231 27.7
CSS0025382 Camellia sinensis var. sinensis HOM05D012118 ORTHO05D009908 1.3e-17 94.7 201 29.4
SGA_v2.0_scaffold540G52806 Striga asiatica HOM05D017631 ORTHO05D009908 1.7e-17 94.4 231 27.3
Rhsim02G0102000 Rhododendron simsii HOM05D002347 ORTHO05D000898 2.8e-17 93.6 109 42.2
Rhsim01G0207900 Rhododendron simsii HOM05D012118 ORTHO05D009908 3.7e-17 93.2 187 27.3
Rhsim02G0127200 Rhododendron simsii HOM05D011344 ORTHO05D016379 4.9e-17 92.8 105 39.0
RhsimUnG0133500 Rhododendron simsii HOM05D024541 ORTHO05D024705 6.3e-17 92.4 94 45.7
SGA_v2.0_scaffold74G24629 Striga asiatica HOM05D017631 ORTHO05D009908 6.3e-17 92.4 222 27.9
Rhsim04G0161400 Rhododendron simsii HOM05D012118 ORTHO05D009908 7.0e-16 89.0 198 27.8
vmacro09225 Vaccinium macrocarpon HOM05D007651 ORTHO05D000898 2.7e-15 87.0 148 33.8
RhsimUnG0074900 Rhododendron simsii HOM05D011344 ORTHO05D016379 3.8e-14 83.2 119 33.6
Lj2g0027504 Lotus japonicus HOM05D009725 ORTHO05D007788 5.5e-13 79.3 223 25.6
COL.COLO4_20373 Corchorus olitorius HOM05D007993 ORTHO05D000898 1.2e-12 78.2 191 26.2
arahy.Tifrunner.gnm1.ann1.AXL83M Arachis hypogaea HOM05D008645 ORTHO05D007788 1.6e-12 77.8 218 28.0
FAN09G4807 Fragaria x ananassa HOM05D004096 ORTHO05D029602 6.1e-12 75.9 217 25.3
Lj5g0015857 Lotus japonicus HOM05D009725 ORTHO05D007788 1.0e-11 75.1 145 29.7
Potri.017G018801 Populus trichocarpa HOM05D000455 ORTHO05D050471 2.0e-10 70.9 223 24.7
Rhsim02G0142200 Rhododendron simsii HOM05D007651 ORTHO05D000898 1.3e-09 68.2 69 44.9
Thhalv10020659m.g Eutrema salsugineum HOM05D002639 ORTHO05D003094 2.2e-09 67.4 182 27.5
Phvul.003G106100 Phaseolus vulgaris HOM05D002639 ORTHO05D003094 6.3e-09 65.9 187 23.5
AL3G18030 Arabidopsis lyrata HOM05D002639 ORTHO05D003094 8.3e-09 65.5 182 26.4
FvH4_7g10251 Fragaria vesca HOM05D004096 ORTHO05D029602 8.3e-09 65.5 212 24.5
Thecc.04G055800 Theobroma cacao HOM05D008451 ORTHO05D009908 8.3e-09 65.5 116 29.3
BolC1t05578H Brassica oleracea HOM05D002639 ORTHO05D003094 1.1e-08 65.1 182 26.4
FvH4_2g27931 Fragaria vesca HOM05D004096 ORTHO05D029602 1.1e-08 65.1 212 24.5
BcaC09g47927 Brassica carinata HOM05D002639 ORTHO05D003094 1.4e-08 64.7 182 26.4
AT3G06910 Arabidopsis thaliana HOM05D002639 ORTHO05D003094 1.8e-08 64.3 182 25.8
BNapus_Darmor_BZH_scaffold_117p00160 Brassica napus HOM05D002639 ORTHO05D003094 1.8e-08 64.3 182 26.4
CSS0002149 Camellia sinensis var. sinensis HOM05D027884 ORTHO05D024735 2.4e-08 63.9 33 90.9
Carub.0003s0643 Capsella rubella HOM05D002639 ORTHO05D003094 2.4e-08 63.9 177 26.0
MBI18_g06865_MAGBIO Magnolia biondii HOM05D002639 ORTHO05D003094 3.2e-08 63.5 187 24.1
Gohir.D10G170600 Gossypium hirsutum HOM05D002639 ORTHO05D003094 4.1e-08 63.2 179 25.7
arahy.Tifrunner.gnm1.ann1.7RK78I Arachis hypogaea HOM05D002639 ORTHO05D003094 5.4e-08 62.8 173 26.0
BraA01t04407Z Brassica rapa HOM05D002639 ORTHO05D003094 5.4e-08 62.8 187 25.7
Gorai.011G190600 Gossypium raimondii HOM05D002639 ORTHO05D003094 5.4e-08 62.8 179 25.7
Gohir.A10G164400 Gossypium hirsutum HOM05D002639 ORTHO05D003094 1.2e-07 61.6 179 25.7
Rhsim06G0089800 Rhododendron simsii HOM05D011344 ORTHO05D000415 1.2e-07 61.6 86 34.9
TWI53G0486 Tripterygium wilfordii HOM05D002639 ORTHO05D003094 1.2e-07 61.6 212 23.6
BcaB04g21301 Brassica carinata HOM05D002639 ORTHO05D003094 1.6e-07 61.2 184 27.2
GSVIVG01022680001 Vitis vinifera HOM05D010670 ORTHO05D013864 1.6e-07 61.2 235 25.1
VMungo1215G3056 Vigna mungo HOM05D002639 ORTHO05D003094 2.0e-07 60.8 187 22.5
AUR62040372 Chenopodium quinoa HOM05D002639 ORTHO05D003094 2.7e-07 60.5 180 23.9
THA.LOC104827344 Tarenaya hassleriana HOM05D002639 ORTHO05D003094 2.7e-07 60.5 182 24.7
CANSAT35G0260 Cannabis sativa HOM05D019351 ORTHO05D018844 3.5e-07 60.1 206 25.2
Sabra17G0002200 Salix brachista HOM05D000063 ORTHO05D050471 3.5e-07 60.1 192 23.4
Actinidia14298 Actinidia chinensis HOM05D002639 ORTHO05D003094 7.8e-07 58.9 175 25.1
Rhsim03G0056000 Rhododendron simsii HOM05D012118 ORTHO05D009908 7.8e-07 58.9 117 30.8
Medtr4g040020 Medicago truncatula HOM05D009725 ORTHO05D007788 1.0e-06 58.5 186 25.3
Rhsim05G0131400 Rhododendron simsii HOM05D011426 ORTHO05D011041 1.0e-06 58.5 135 27.4
RhsimUnG0161200 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.0e-06 58.5 119 31.1
RhsimUnG0178300 Rhododendron simsii HOM05D012118 ORTHO05D009908 1.0e-06 58.5 119 31.1
Sed0000099 Sechium edule HOM05D002639 ORTHO05D003094 1.3e-06 58.2 179 24.6
Solyc01g066830.3 Solanum lycopersicum HOM05D002639 ORTHO05D003094 1.3e-06 58.2 175 22.9
Sopen01g028430 Solanum pennellii HOM05D002639 ORTHO05D003094 1.3e-06 58.2 175 22.9
EL10Ac3g06606 Beta vulgaris HOM05D002639 ORTHO05D003094 1.7e-06 57.8 175 24.0
Migut.N00090 Erythranthe guttata HOM05D002639 ORTHO05D003094 1.7e-06 57.8 180 24.4
Medtr2g436660 Medicago truncatula HOM05D002639 ORTHO05D003094 2.3e-06 57.4 176 25.6
Psat1g154240 Pisum sativum HOM05D002639 ORTHO05D003094 2.9e-06 57.0 176 25.0
Oeu061925.1 Olea europaea HOM05D008641 ORTHO05D000397 3.9e-06 56.6 102 25.5
Medtr4g119970 Medicago truncatula HOM05D002639 ORTHO05D003094 5.0e-06 56.2 174 23.0
Oeu009393.1 Olea europaea HOM05D009665 ORTHO05D011335 5.0e-06 56.2 146 28.8
Oeu035678.1 Olea europaea HOM05D002639 ORTHO05D003094 8.6e-06 55.5 188 26.6


User provided reference genes

Program Settings