Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 3.2e-167 591.7 298 100.0
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 1.4e-122 443.4 317 72.9
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 2.7e-121 439.1 322 72.0
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 8.1e-118 427.6 309 71.2
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 4.4e-116 421.8 310 70.6
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 5.8e-116 421.4 311 71.1
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 5.8e-116 421.4 310 70.6
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 7.6e-116 421.0 306 70.6
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 8.4e-115 417.5 297 71.4
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 4.2e-114 415.2 312 67.3
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 7.1e-114 414.5 309 70.6
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 2.5e-111 406.0 307 68.7
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 1.3e-110 403.7 305 66.9
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 2.8e-110 402.5 307 69.7
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 3.6e-110 402.1 291 71.1
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 8.1e-110 401.0 302 71.2
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 3.4e-108 395.6 298 67.1
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 4.4e-108 395.2 303 71.3
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 7.6e-108 394.4 231 80.5
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 9.9e-108 394.0 298 66.8
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 9.9e-108 394.0 312 67.3
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 1.1e-106 390.6 343 60.6
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 1.1e-106 390.6 364 58.8
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 3.2e-106 389.0 294 69.4
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 5.4e-106 388.3 281 69.8
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 9.3e-106 387.5 281 69.8
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.2e-105 387.1 321 65.1
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 1.6e-105 386.7 307 67.1
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 2.1e-105 386.3 299 69.2
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 2.7e-105 386.0 312 65.1
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 3.5e-105 385.6 284 69.7
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 2.3e-104 382.9 300 68.3
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 3.0e-104 382.5 260 74.2
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 3.9e-104 382.1 227 80.2
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 3.9e-104 382.1 293 68.6
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 5.1e-104 381.7 238 76.9
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 6.6e-104 381.3 394 54.8
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 8.7e-104 380.9 307 67.1
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 1.5e-103 380.2 230 79.1
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.5e-103 380.2 259 73.4
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 1.9e-103 379.8 229 78.6
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 2.5e-103 379.4 302 66.9
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 9.6e-103 377.5 222 80.2
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 1.3e-102 377.1 297 65.3
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.3e-102 377.1 299 66.2
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 1.6e-102 376.7 285 67.7
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.6e-102 376.7 303 66.0
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 1.6e-102 376.7 299 66.2
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 4.8e-102 375.2 283 68.9
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 8.1e-102 374.4 295 67.1
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 1.4e-101 373.6 285 68.1
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 1.4e-101 373.6 218 79.8
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 1.8e-101 373.2 284 66.5
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 3.1e-101 372.5 279 67.7
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 3.1e-101 372.5 269 67.7
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 4.0e-101 372.1 299 64.5
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 4.0e-101 372.1 213 82.2
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 1.2e-100 370.5 226 77.0
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 1.5e-100 370.2 282 66.3
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 3.4e-100 369.0 294 65.3
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 3.4e-100 369.0 226 77.4
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.8e-100 368.2 224 76.3
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 7.6e-100 367.9 221 79.2
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 4.9e-99 365.2 218 78.0
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 4.9e-99 365.2 232 75.4
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 4.9e-99 365.2 308 64.0
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 8.4e-99 364.4 232 75.9
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.2e-97 360.5 302 63.9
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.7e-97 359.4 242 71.1
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 1.1e-95 354.0 257 69.6
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 1.5e-95 353.6 217 77.9
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 2.1e-94 349.7 270 68.9
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 2.8e-94 349.4 230 72.2
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 8.1e-94 347.8 275 68.4
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 1.8e-93 346.7 292 62.7
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 1.5e-92 343.6 250 66.8
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 2.6e-92 342.8 291 61.2
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 4.9e-91 338.6 230 72.2
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 1.4e-90 337.0 282 60.6
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 2.5e-90 336.3 241 67.2
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 7.1e-90 334.7 299 57.9
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 2.7e-89 332.8 295 62.0
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 4.6e-89 332.0 292 60.6
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 8.7e-88 327.8 292 58.2
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 8.7e-88 327.8 292 58.2
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 1.5e-87 327.0 241 66.0
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 1.5e-87 327.0 291 58.1
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 4.3e-87 325.5 290 58.3
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 4.3e-87 325.5 241 65.6
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 6.3e-86 321.6 183 81.4
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 5.3e-85 318.5 292 57.9
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 5.3e-85 318.5 287 59.6
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 1.5e-84 317.0 284 56.3
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 2.0e-84 316.6 290 56.2
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 2.0e-84 316.6 275 61.1
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 2.6e-84 316.2 309 57.0
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 2.1e-81 306.6 260 63.1
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 2.7e-81 306.2 314 52.5
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 2.3e-80 303.1 283 57.2
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 3.7e-78 295.8 231 71.4
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 1.1e-77 294.3 218 62.4
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 1.4e-77 293.9 228 63.6
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 2.6e-76 289.7 230 60.4
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 7.2e-74 281.6 179 72.6
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 7.9e-73 278.1 151 84.8
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 5.7e-71 271.9 264 53.8
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.7e-70 270.4 151 82.1
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 1.5e-68 263.8 219 58.4
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 7.7e-68 261.5 229 64.2
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 1.3e-62 244.2 143 79.7
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 4.7e-57 225.7 196 60.2
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 1.8e-56 223.8 139 75.5
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 4.0e-56 222.6 185 63.2
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 2.0e-55 220.3 180 64.4
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 1.0e-48 198.0 142 70.4
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 4.7e-41 172.6 146 61.0
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 2.4e-37 160.2 181 39.8
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 4.7e-33 146.0 152 56.6
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 6.8e-32 142.1 198 39.4
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 6.4e-30 135.6 68 98.5
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 5.9e-28 129.0 137 53.3
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 5.6e-10 69.3 36 80.6
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 4.7e-09 66.2 102 41.2
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 4.0e-08 63.2 105 32.4
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 1.2e-07 61.6 105 32.4
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 9.9e-07 58.5 96 35.4
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 1.7e-06 57.8 105 31.4
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 1.7e-06 57.8 105 31.4
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 2.9e-06 57.0 100 30.0
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 2.9e-06 57.0 100 31.0
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 2.9e-06 57.0 102 32.4
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 2.9e-06 57.0 100 31.0
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 3.8e-06 56.6 101 31.7
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 3.8e-06 56.6 105 30.5
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 6.4e-06 55.8 101 30.7
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 8.4e-06 55.5 105 29.5
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 8.4e-06 55.5 105 32.4


User provided reference genes

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