Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 6.6e-245 850.9 659 100.0
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 8.0e-150 535.0 659 77.2
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 1.5e-148 530.8 656 77.7
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 7.5e-140 501.9 633 76.0
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 3.7e-115 419.9 668 54.8
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 3.5e-113 413.3 644 70.8
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 4.7e-110 402.9 658 61.4
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 5.2e-109 399.4 641 67.6
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 2.4e-106 390.6 615 69.1
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 7.1e-106 389.0 442 69.7
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 2.1e-105 387.5 633 53.9
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 2.8e-102 377.1 652 65.0
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 8.1e-102 375.6 598 64.4
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 6.8e-101 372.5 675 63.4
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 1.2e-100 371.7 672 63.4
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 9.9e-100 368.6 669 62.9
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 5.6e-95 352.8 618 68.9
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 1.6e-94 351.3 458 68.8
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 1.1e-90 338.6 665 49.3
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.1e-89 334.3 431 68.4
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 5.6e-87 326.2 669 58.4
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 2.8e-86 323.9 558 70.4
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 3.6e-86 323.6 664 53.6
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 2.4e-85 320.9 447 64.4
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 5.8e-84 316.2 667 60.9
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 1.7e-83 314.7 451 62.7
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 9.3e-82 308.9 637 61.9
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 1.0e-80 305.4 446 64.1
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 2.3e-80 304.3 446 63.7
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 3.9e-80 303.5 450 55.8
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.6e-78 298.1 267 62.2
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.8e-78 297.4 636 49.5
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 4.9e-75 286.6 668 53.1
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 1.3e-72 278.5 431 61.7
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 1.8e-72 278.1 438 58.2
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 4.3e-71 273.5 447 61.1
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 5.6e-71 273.1 447 61.1
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 5.6e-71 273.1 430 60.0
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 7.4e-71 272.7 668 52.8
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 2.6e-68 264.2 389 66.8
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 7.6e-68 262.7 455 57.1
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 2.5e-66 257.7 668 54.5
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 5.5e-66 256.5 567 57.8
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 5.1e-64 250.0 671 55.3
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 4.3e-63 246.9 469 65.9
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.6e-62 245.0 469 63.5
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 1.4e-61 241.9 363 67.5
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 1.5e-60 238.4 604 47.4
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 2.0e-60 238.0 611 59.6
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 8.4e-59 232.6 665 51.3
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 7.9e-57 226.1 446 57.4
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 1.0e-56 225.7 517 34.2
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 3.0e-56 224.2 440 57.0
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 5.1e-56 223.4 617 50.4
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 8.7e-56 222.6 603 43.6
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 3.1e-53 214.2 230 47.8
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 7.2e-50 203.0 209 50.2
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 2.1e-49 201.4 614 49.5
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 1.0e-48 199.1 598 51.2
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 2.3e-48 198.0 344 62.5
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.1e-47 195.7 559 52.6
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 1.5e-47 195.3 615 43.6
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 2.8e-46 191.0 224 46.9
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 4.8e-46 190.3 384 57.6
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 2.6e-44 184.5 681 48.2
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 3.8e-43 180.6 174 47.1
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 9.4e-42 176.0 616 40.7
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 3.6e-41 174.1 618 37.4
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 3.6e-41 174.1 610 29.0
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 9.7e-39 166.0 608 24.7
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 1.8e-37 161.8 608 34.4
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 4.1e-37 160.6 386 46.6
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 5.3e-37 160.2 613 40.8
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 1.7e-35 155.2 278 66.2
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 5.0e-35 153.7 611 24.1
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 1.5e-34 152.1 597 33.2
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 7.2e-34 149.8 386 39.6
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 1.6e-33 148.7 609 22.8
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 2.1e-33 148.3 111 63.1
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 4.7e-33 147.1 609 22.8
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 6.7e-32 143.3 610 24.6
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 6.7e-32 143.3 610 24.6
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 9.7e-31 139.4 102 67.6
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 6.3e-30 136.7 585 37.4
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 1.0e-27 129.4 601 41.4
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 3.2e-26 124.4 608 33.2
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 8.0e-25 119.8 137 43.8
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 1.8e-24 118.6 516 43.8
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 1.5e-23 115.5 292 55.8
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 4.4e-23 114.0 506 42.3
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.2e-14 85.1 262 27.5
Lj6C66G1 Lonicera japonica HOM05D007552 ORTHO05D009397 6.6e-11 73.6 105 40.0
MD17G1163000 Malus domestica HOM05D007552 ORTHO05D009397 2.5e-10 71.6 114 37.7
Ciclev10031257m.g Citrus clementina HOM05D000424 ORTHO05D008586 9.5e-10 69.7 153 27.5
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 9.5e-10 69.7 100 29.0
CiPaw.01G197700 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.6e-09 68.9 160 26.2
MBI07_g21926_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D008586 1.6e-09 68.9 154 27.9
QL06p001583 Quercus lobata HOM05D000424 ORTHO05D000355 3.6e-09 67.8 160 26.9
Atru.chr4.2418 Acer truncatum HOM05D000424 ORTHO05D000355 4.7e-09 67.4 169 28.4
TWI53G1953 Tripterygium wilfordii HOM05D000424 ORTHO05D000355 4.7e-09 67.4 158 26.6
Atru.chr4.2419 Acer truncatum HOM05D000424 ORTHO05D000355 1.0e-08 66.2 169 27.8
Atru.ctg752_3.32 Acer truncatum HOM05D000424 ORTHO05D000355 1.0e-08 66.2 169 27.8
Manes.03G175400 Manihot esculenta HOM05D000424 ORTHO05D000355 1.0e-08 66.2 156 26.9
SGA_v2.0_scaffold165G38283 Striga asiatica HOM05D000424 ORTHO05D000355 1.4e-08 65.9 155 27.1
Atru.ctg752_3.33 Acer truncatum HOM05D000424 ORTHO05D000355 1.8e-08 65.5 161 29.2
Sed0014952 Sechium edule HOM05D000424 ORTHO05D000355 1.8e-08 65.5 149 27.5
Thecc.04G235900 Theobroma cacao HOM05D000424 ORTHO05D000355 1.8e-08 65.5 150 28.7
SEGI_01251 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 3.0e-08 64.7 149 27.5
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 5.2e-08 63.9 153 25.5
Potri.010G083800 Populus trichocarpa HOM05D000424 ORTHO05D000355 8.9e-08 63.2 156 23.7
COL.COLO4_21525 Corchorus olitorius HOM05D000424 ORTHO05D000355 1.2e-07 62.8 252 25.0
FAN13G0831 Fragaria x ananassa HOM05D000424 ORTHO05D008586 1.2e-07 62.8 172 29.1
Potri.010G084000 Populus trichocarpa HOM05D000424 ORTHO05D000355 1.2e-07 62.8 156 24.4
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 1.5e-07 62.4 221 24.0
FvH4_4g36630 Fragaria vesca HOM05D000424 ORTHO05D008586 1.5e-07 62.4 172 28.5
TPR.G20566 Trifolium pratense HOM05D007552 ORTHO05D009397 1.5e-07 62.4 84 39.3
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 2.0e-07 62.0 196 26.0
Aqoxy2G03436 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 2.6e-07 61.6 149 26.8
EL10Ac6g13428 Beta vulgaris HOM05D000424 ORTHO05D008586 3.4e-07 61.2 168 26.8
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 3.4e-07 61.2 177 25.4
Duzib212G0217 Durio zibethinus HOM05D000424 ORTHO05D000355 3.4e-07 61.2 151 26.5
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 4.4e-07 60.8 179 26.8
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 4.4e-07 60.8 179 26.8
TAR374G1548 Trochodendron aralioides HOM05D000424 ORTHO05D008586 4.4e-07 60.8 205 25.4
Aa31LG1G15500 Aethionema arabicum HOM05D000424 ORTHO05D000355 5.7e-07 60.5 153 28.1
CANSAT80G1535 Cannabis sativa HOM05D000424 ORTHO05D000355 5.7e-07 60.5 156 25.6
SGA_v2.0_scaffold165G38282 Striga asiatica HOM05D000424 ORTHO05D000355 5.7e-07 60.5 158 24.1
ECA248G3068 Erigeron canadensis HOM05D005973 ORTHO05D007285 9.8e-07 59.7 211 23.2
FvH4_5g29890 Fragaria vesca HOM05D000424 ORTHO05D008586 9.8e-07 59.7 175 28.6
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 9.8e-07 59.7 180 25.6
PGR119G1668 Punica granatum HOM05D000424 ORTHO05D008586 9.8e-07 59.7 153 26.1
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.3e-06 59.3 179 26.3
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.3e-06 59.3 179 26.3
Duzib106G0003 Durio zibethinus HOM05D005973 ORTHO05D007285 1.3e-06 59.3 155 23.9
Sabra10G0059000 Salix brachista HOM05D000424 ORTHO05D000355 1.3e-06 59.3 173 24.3
Sc09g0002270 Simmondsia chinensis HOM05D007173 ORTHO05D009151 1.3e-06 59.3 178 27.5
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 1.3e-06 59.3 146 27.4
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 1.7e-06 58.9 179 26.3
Psat7g241480 Pisum sativum HOM05D005973 ORTHO05D007285 1.7e-06 58.9 154 26.6
Potri.005G090600 Populus trichocarpa HOM05D007202 ORTHO05D009125 1.7e-06 58.9 177 24.9
vmacro19755 Vaccinium macrocarpon HOM05D005973 ORTHO05D007285 1.7e-06 58.9 239 25.1
Cpa.g.sc58.67 Carica papaya HOM05D000424 ORTHO05D000355 2.2e-06 58.5 184 24.5
Rhsim11G0055600 Rhododendron simsii HOM05D007145 ORTHO05D008952 2.9e-06 58.2 177 22.6
Sabra05G0074700 Salix brachista HOM05D007202 ORTHO05D009125 2.9e-06 58.2 177 24.3
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 3.7e-06 57.8 153 22.9
CAN.G141.7 Capsicum annuum HOM05D000001 ORTHO05D009726 4.9e-06 57.4 72 37.5
vmacro08165 Vaccinium macrocarpon HOM05D007202 ORTHO05D009125 4.9e-06 57.4 173 25.4
CsaV3_2G032830 Cucumis sativus L. HOM05D000424 ORTHO05D000355 6.4e-06 57.0 150 24.0
Dinv44566 Davidia involucrata HOM05D000424 ORTHO05D000355 6.4e-06 57.0 156 24.4
Medtr5g006640 Medicago truncatula HOM05D000424 ORTHO05D000355 6.4e-06 57.0 150 24.7
Migut.N00201 Erythranthe guttata HOM05D000424 ORTHO05D000355 8.3e-06 56.6 158 24.1
PGR031G1616 Punica granatum HOM05D000424 ORTHO05D008586 8.3e-06 56.6 153 26.1


User provided reference genes

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