Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.0e-92 342.4 173 100.0
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.8e-86 322.0 173 94.8
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 5.6e-71 271.2 173 83.8
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.1e-70 269.2 173 81.5
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 9.9e-68 260.4 173 77.5
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.3e-67 260.0 173 75.7
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 2.4e-66 255.8 168 76.8
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 1.6e-65 253.1 170 72.9
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 7.9e-65 250.8 169 76.9
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 3.0e-64 248.8 169 77.5
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 3.9e-64 248.4 173 72.3
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 6.7e-64 247.7 169 76.3
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 6.7e-64 247.7 169 70.4
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 4.3e-63 245.0 170 69.4
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 5.6e-63 244.6 169 71.6
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 5.6e-63 244.6 162 75.9
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 5.6e-63 244.6 162 75.9
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 7.4e-63 244.2 170 70.6
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 1.3e-62 243.4 170 71.2
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 1.6e-62 243.0 164 73.8
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.6e-62 243.0 171 71.3
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 1.6e-62 243.0 171 71.3
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.1e-61 240.4 171 70.8
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 1.1e-61 240.4 168 72.0
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 1.1e-61 240.4 171 72.5
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.4e-61 240.0 162 75.9
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 3.1e-61 238.8 168 73.8
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.0e-61 238.4 157 75.2
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 4.0e-61 238.4 158 74.7
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 4.0e-61 238.4 163 73.6
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 5.3e-61 238.0 169 72.8
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 6.9e-61 237.7 159 74.8
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 6.9e-61 237.7 168 69.6
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 9.0e-61 237.3 171 71.9
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 9.0e-61 237.3 168 70.2
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 1.3e-59 233.4 171 70.8
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 1.3e-59 233.4 163 73.6
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 2.2e-59 232.6 159 73.6
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 2.9e-59 232.3 168 67.3
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.8e-59 231.9 170 72.4
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.9e-59 231.5 161 72.0
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 4.9e-59 231.5 159 74.8
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 6.5e-59 231.1 166 67.5
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 1.9e-58 229.6 158 71.5
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 2.5e-58 229.2 171 69.6
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 4.2e-58 228.4 165 72.7
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 9.3e-58 227.3 170 69.4
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 1.6e-57 226.5 157 68.2
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 2.1e-57 226.1 158 69.6
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 2.1e-57 226.1 163 71.8
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 2.7e-57 225.7 139 82.0
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 2.3e-56 222.6 158 68.4
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 3.0e-56 222.2 163 70.6
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 3.9e-56 221.9 158 67.7
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 1.1e-55 220.3 156 68.6
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.5e-55 219.9 160 66.9
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.5e-55 219.9 165 69.7
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.5e-55 219.2 162 66.7
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 4.3e-55 218.4 165 64.2
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 4.3e-55 218.4 168 63.7
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 5.7e-55 218.0 159 67.3
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 5.7e-55 218.0 172 66.3
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 7.4e-55 217.6 169 63.9
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 1.6e-54 216.5 159 66.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.6e-54 216.5 167 68.3
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.6e-54 216.5 167 68.3
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 2.1e-54 216.1 213 54.9
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 2.8e-54 215.7 162 67.3
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 3.7e-54 215.3 154 68.2
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 3.7e-54 215.3 154 68.2
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 4.8e-54 214.9 167 67.7
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 6.2e-54 214.5 150 68.7
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 6.2e-54 214.5 150 68.7
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 6.2e-54 214.5 150 68.7
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 2.4e-53 212.6 157 66.2
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 5.3e-53 211.5 172 65.7
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.5e-52 209.9 171 65.5
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 1.5e-52 209.9 174 62.6
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 4.5e-52 208.4 176 61.9
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 4.5e-52 208.4 162 64.8
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 5.8e-52 208.0 139 74.8
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 5.8e-52 208.0 154 74.0
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 1.7e-51 206.5 141 71.6
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 2.2e-51 206.1 162 63.6
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 3.8e-51 205.3 156 65.4
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 6.5e-51 204.5 171 61.4
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.9e-50 203.0 162 63.6
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 2.5e-50 202.6 145 68.3
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 4.2e-50 201.8 176 61.4
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 4.2e-50 201.8 159 64.2
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 9.3e-50 200.7 163 64.4
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 1.6e-49 199.9 235 50.2
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 1.6e-49 199.9 155 65.2
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 2.1e-49 199.5 162 63.0
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 6.1e-49 198.0 141 72.3
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 5.1e-48 194.9 171 56.1
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 5.7e-47 191.4 154 64.3
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 9.7e-47 190.7 133 73.7
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 3.7e-46 188.7 156 64.7
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 3.7e-46 188.7 169 60.9
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 4.8e-46 188.3 133 70.7
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 2.4e-45 186.0 155 60.6
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 4.2e-42 175.3 144 62.5
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 7.2e-42 174.5 109 80.7
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 9.4e-42 174.1 134 69.4
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 3.3e-39 165.6 151 57.6
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 7.4e-39 164.5 143 62.2
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 1.3e-38 163.7 159 52.2
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 1.7e-38 163.3 149 55.0
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 9.1e-37 157.5 142 59.2
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 9.1e-37 157.5 111 72.1
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 2.9e-35 152.5 90 82.2
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 6.5e-35 151.4 87 81.6
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.6e-33 145.6 83 84.3
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 1.5e-31 140.2 100 70.0
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 2.6e-31 139.4 138 60.9
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 6.3e-30 134.8 116 62.9
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.2e-25 120.6 79 73.4
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 1.1e-23 114.0 143 43.4
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 2.0e-23 113.2 119 48.7
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 4.8e-22 108.6 63 81.0
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 2.0e-20 103.2 112 51.8
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 7.7e-20 101.3 84 61.9
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 7.7e-20 101.3 84 61.9
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 2.2e-19 99.8 54 87.0
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.2e-19 99.8 83 67.5
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.1e-17 91.7 51 86.3
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 5.7e-15 85.1 53 73.6
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 5.7e-15 85.1 60 68.3
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.5e-11 71.6 53 67.9
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 2.5e-10 69.7 85 32.9


User provided reference genes

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