Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020924 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D002584 3.2e-30 134.4 67 100.0
CSS0048529 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 5.8e-16 87.0 46 95.7
Dinv12728 Davidia involucrata HOM05D000054 ORTHO05D000171 2.3e-12 75.1 72 56.9
Lj2C315T5 Lonicera japonica HOM05D000054 ORTHO05D000171 2.3e-12 75.1 71 57.7
Haze_05411 Corylus avellana HOM05D000054 ORTHO05D002584 3.0e-12 74.7 75 53.3
Rhsim02G0110200 Rhododendron simsii HOM05D000054 ORTHO05D000171 3.0e-12 74.7 71 59.2
Solyc02g071870.4 Solanum lycopersicum HOM05D000054 ORTHO05D000171 1.1e-11 72.8 70 57.1
Sopen02g020860 Solanum pennellii HOM05D000054 ORTHO05D000171 1.1e-11 72.8 70 57.1
Cfa001094 Carpinus fangiana HOM05D000054 ORTHO05D002584 1.5e-11 72.4 71 54.9
Haze_05408 Corylus avellana HOM05D000054 ORTHO05D000171 1.5e-11 72.4 71 54.9
Hund21457 Selenicereus undatus HOM05D000054 ORTHO05D000171 1.9e-11 72.0 71 54.9
vmacro10939 Vaccinium macrocarpon HOM05D000054 ORTHO05D000171 2.5e-11 71.6 71 56.3
GSVIVG01021280001 Vitis vinifera HOM05D000054 ORTHO05D000171 4.3e-11 70.9 71 54.9
CAN.G411.26 Capsicum annuum HOM05D000054 ORTHO05D000171 5.6e-11 70.5 71 57.7
Manes.17G061200 Manihot esculenta HOM05D000054 ORTHO05D000171 7.4e-11 70.1 71 54.9
PGSC0003DMG402028453 Solanum tuberosum HOM05D000054 ORTHO05D002584 7.4e-11 70.1 70 55.7
Solyc02g071880.3 Solanum lycopersicum HOM05D000054 ORTHO05D000171 9.6e-11 69.7 71 56.3
Sopen02g020870 Solanum pennellii HOM05D000054 ORTHO05D000171 9.6e-11 69.7 71 56.3
Actinidia39532 Actinidia chinensis HOM05D000054 ORTHO05D002584 1.3e-10 69.3 70 54.3
Peaxi162Scf00112g01913 Petunia axillaris HOM05D000054 ORTHO05D000171 1.3e-10 69.3 71 56.3
GSVIVG01021281001 Vitis vinifera HOM05D000054 ORTHO05D002584 1.3e-10 69.3 71 53.5
Actinidia16764 Actinidia chinensis HOM05D000054 ORTHO05D000171 1.6e-10 68.9 73 53.4
CSS0022270 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 2.8e-10 68.2 71 54.9
CSS0048398 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 2.8e-10 68.2 71 54.9
Haze_05405 Corylus avellana HOM05D000054 ORTHO05D000171 2.8e-10 68.2 70 54.3
Eucgr.D00418 Eucalyptus grandis HOM05D000054 ORTHO05D002584 8.2e-10 66.6 70 51.4
Manes.16G044300 Manihot esculenta HOM05D000054 ORTHO05D000171 8.2e-10 66.6 71 50.7
MSTRG.7442 Avicennia marina HOM05D000054 ORTHO05D000171 1.1e-09 66.2 71 49.3
DCAR_005176 Daucus carota HOM05D000054 ORTHO05D000171 1.1e-09 66.2 73 50.7
Ah.14g086900 Amaranthus hybridus HOM05D000054 ORTHO05D000171 1.4e-09 65.9 71 53.5
EL10Ac8g19866 Beta vulgaris HOM05D000054 ORTHO05D000171 1.8e-09 65.5 71 53.5
Nitab4.5_0008572g0050 Nicotiana tabacum HOM05D000054 ORTHO05D000171 1.8e-09 65.5 71 54.9
MSTRG.7441 Avicennia marina HOM05D000054 ORTHO05D000171 2.4e-09 65.1 71 47.9
Eucgr.D00415 Eucalyptus grandis HOM05D000054 ORTHO05D000171 2.4e-09 65.1 70 51.4
MD00G1006800 Malus domestica HOM05D000054 ORTHO05D000171 4.0e-09 64.3 73 49.3
TPR.G6785 Trifolium pratense HOM05D000054 ORTHO05D000171 4.0e-09 64.3 71 46.5
Aqoxy4G00207 Aquilegia oxysepala HOM05D003602 ORTHO05D004808 5.3e-09 63.9 45 64.4
Duzib235G0508 Durio zibethinus HOM05D000054 ORTHO05D000171 5.3e-09 63.9 76 46.1
MSTRG.14746 Avicennia marina HOM05D000054 ORTHO05D000171 6.9e-09 63.5 71 49.3
CANSAT35G1492 Cannabis sativa HOM05D000054 ORTHO05D000171 6.9e-09 63.5 70 48.6
CSS0015393 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 9.0e-09 63.2 32 96.9
CSS0034854 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 9.0e-09 63.2 32 96.9
RcHm_v2.0_Chr5g0012081 Rosa chinensis HOM05D000054 ORTHO05D000171 9.0e-09 63.2 69 49.3
MD00G1007000 Malus domestica HOM05D000054 ORTHO05D000171 1.2e-08 62.8 68 48.5
arahy.Tifrunner.gnm1.ann1.FI1HV3 Arachis hypogaea HOM05D000054 ORTHO05D000171 1.5e-08 62.4 70 48.6
CSS0014394 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.5e-08 62.4 69 53.6
CSS0022769 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 1.5e-08 62.4 69 53.6
MD10G1273600 Malus domestica HOM05D000054 ORTHO05D000171 1.5e-08 62.4 68 47.1
BraA07t28831Z Brassica rapa HOM05D000054 ORTHO05D002584 2.0e-08 62.0 47 63.8
CAN.G411.25 Capsicum annuum HOM05D000054 ORTHO05D000171 2.0e-08 62.0 66 56.1
TWI73G0799 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 2.6e-08 61.6 71 45.1
arahy.Tifrunner.gnm1.ann1.LTRJ1V Arachis hypogaea HOM05D000054 ORTHO05D000171 3.4e-08 61.2 70 47.1
FvH4_3g07045 Fragaria vesca HOM05D000054 ORTHO05D000171 3.4e-08 61.2 68 48.5
FAN11G3923 Fragaria x ananassa HOM05D000054 ORTHO05D000171 3.4e-08 61.2 68 48.5
Lj1C1177G18 Lonicera japonica HOM05D000054 ORTHO05D000171 3.4e-08 61.2 70 48.6
TWI09G1120 Tripterygium wilfordii HOM05D000054 ORTHO05D000171 3.4e-08 61.2 71 46.5
Oeu039866.1 Olea europaea HOM05D000054 ORTHO05D000171 5.8e-08 60.5 71 45.1
Prupe.4G069000 Prunus persica HOM05D000054 ORTHO05D002584 5.8e-08 60.5 67 47.8
MSTRG.16180 Avicennia marina HOM05D000054 ORTHO05D000171 7.6e-08 60.1 71 46.5
Potri.011G072566 Populus trichocarpa HOM05D000054 ORTHO05D000171 7.6e-08 60.1 68 47.1
Migut.H01401 Erythranthe guttata HOM05D000054 ORTHO05D000171 1.0e-07 59.7 71 47.9
FAN21G1730 Fragaria x ananassa HOM05D000054 ORTHO05D000171 1.0e-07 59.7 71 46.5
Glyma.13G224500 Glycine max HOM05D000054 ORTHO05D000171 1.0e-07 59.7 69 46.4
QL05p050823 Quercus lobata HOM05D000054 ORTHO05D000171 1.0e-07 59.7 67 49.3
AUR62039501 Chenopodium quinoa HOM05D000054 ORTHO05D000171 1.3e-07 59.3 70 50.0
Haze_05414 Corylus avellana HOM05D000054 ORTHO05D000171 1.3e-07 59.3 46 54.3
Eucgr.E02839 Eucalyptus grandis HOM05D000054 ORTHO05D000171 1.3e-07 59.3 63 50.8
Eucgr.E02840 Eucalyptus grandis HOM05D000054 ORTHO05D000171 1.3e-07 59.3 63 50.8
Eucgr.E02844 Eucalyptus grandis HOM05D000054 ORTHO05D000171 1.3e-07 59.3 42 66.7
Lalb_Chr13g0295381 Lupinus albus HOM05D000054 ORTHO05D000171 1.3e-07 59.3 70 45.7
Oeu040935.1 Olea europaea HOM05D000054 ORTHO05D000171 1.3e-07 59.3 71 42.3
Oeu052141.1 Olea europaea HOM05D000054 ORTHO05D002584 1.3e-07 59.3 72 43.1
DCAR_007925 Daucus carota HOM05D000054 ORTHO05D002584 1.7e-07 58.9 71 46.5
Medtr8g087740 Medicago truncatula HOM05D000054 ORTHO05D000171 1.7e-07 58.9 69 44.9
Phvul.006G170500 Phaseolus vulgaris HOM05D000054 ORTHO05D000171 1.7e-07 58.9 70 47.1
Gohir.A06G127800 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.2e-07 58.5 67 44.8
Gohir.D06G139600 Gossypium hirsutum HOM05D000054 ORTHO05D000171 2.2e-07 58.5 67 44.8
Gorai.010G162800 Gossypium raimondii HOM05D000054 ORTHO05D000171 2.2e-07 58.5 67 44.8
MD00G1006900 Malus domestica HOM05D000054 ORTHO05D000171 2.2e-07 58.5 69 46.4
Sed0002767 Sechium edule HOM05D000054 ORTHO05D000171 2.2e-07 58.5 67 49.3
Aqoxy4G00208 Aquilegia oxysepala HOM05D000054 ORTHO05D000171 2.9e-07 58.2 42 64.3
Cc02_g15910 Coffea canephora HOM05D000054 ORTHO05D000171 2.9e-07 58.2 67 49.3
Nn6g34448 Nelumbo nucifera HOM05D000054 ORTHO05D000171 2.9e-07 58.2 71 49.3
Nitab4.5_0005453g0040 Nicotiana tabacum HOM05D000054 ORTHO05D000171 2.9e-07 58.2 32 84.4
QL05p051288 Quercus lobata HOM05D000054 ORTHO05D000171 3.8e-07 57.8 67 47.8
FAN21G2359 Fragaria x ananassa HOM05D000054 ORTHO05D000171 4.9e-07 57.4 71 45.1
FAN21G3268 Fragaria x ananassa HOM05D000054 ORTHO05D000171 4.9e-07 57.4 71 45.1
MD00G1006700 Malus domestica HOM05D000054 ORTHO05D000171 4.9e-07 57.4 40 65.0
MD10G1273400 Malus domestica HOM05D000054 ORTHO05D000171 4.9e-07 57.4 45 62.2
QL05p051832 Quercus lobata HOM05D000054 ORTHO05D000171 4.9e-07 57.4 54 55.6
Sed0008044 Sechium edule HOM05D000054 ORTHO05D000171 4.9e-07 57.4 66 47.0
VMungo0540G2231 Vigna mungo HOM05D000054 ORTHO05D000171 4.9e-07 57.4 70 45.7
GSVIVG01021276001 Vitis vinifera HOM05D000054 ORTHO05D002584 4.9e-07 57.4 71 45.1
Aqoxy4G00426 Aquilegia oxysepala HOM05D000054 ORTHO05D002584 6.5e-07 57.0 42 61.9
Cpa.g.sc124.20 Carica papaya HOM05D000054 ORTHO05D002584 6.5e-07 57.0 67 44.8
Cfa019532 Carpinus fangiana HOM05D000054 ORTHO05D002584 6.5e-07 57.0 65 46.2
ECA248G3187 Erigeron canadensis HOM05D000054 ORTHO05D000171 6.5e-07 57.0 73 43.8
Nitab4.5_0013701g0010 Nicotiana tabacum HOM05D000054 ORTHO05D000171 6.5e-07 57.0 31 87.1
RcHm_v2.0_Chr5g0012071 Rosa chinensis HOM05D000054 ORTHO05D000171 6.5e-07 57.0 48 58.3
ClCG03G007350 Citrullus lanatus HOM05D000054 ORTHO05D000171 8.4e-07 56.6 67 46.3
Dinv32322 Davidia involucrata HOM05D000054 ORTHO05D000171 8.4e-07 56.6 71 46.5
Eucgr.E02843 Eucalyptus grandis HOM05D000054 ORTHO05D000171 8.4e-07 56.6 42 64.3
Manes.16G044200 Manihot esculenta HOM05D000054 ORTHO05D000171 8.4e-07 56.6 71 45.1
Nn3g21029 Nelumbo nucifera HOM05D000054 ORTHO05D000171 8.4e-07 56.6 71 46.5
Potri.004G063500 Populus trichocarpa HOM05D000054 ORTHO05D000171 8.4e-07 56.6 69 46.4
GSVIVG01014113001 Vitis vinifera HOM05D000054 ORTHO05D000171 8.4e-07 56.6 71 46.5
Cpa.g.sc77.36 Carica papaya HOM05D000054 ORTHO05D002584 1.4e-06 55.8 40 65.0
Duzib213G0432 Durio zibethinus HOM05D000054 ORTHO05D000171 1.4e-06 55.8 69 46.4
Sabra11G0056700 Salix brachista HOM05D001706 ORTHO05D001789 1.4e-06 55.8 70 45.7
Sabra11G0060100 Salix brachista HOM05D001706 ORTHO05D001789 1.4e-06 55.8 70 45.7
Thecc.06G162700 Theobroma cacao HOM05D000054 ORTHO05D000171 1.4e-06 55.8 72 44.4
Lj4g0008664 Lotus japonicus HOM05D000054 ORTHO05D000171 1.9e-06 55.5 70 41.4
QL05p051255 Quercus lobata HOM05D000054 ORTHO05D000171 1.9e-06 55.5 67 44.8
Thecc.07G129200 Theobroma cacao HOM05D000054 ORTHO05D000171 1.9e-06 55.5 69 46.4
Atru.chr9.1615 Acer truncatum HOM05D000054 ORTHO05D000171 2.5e-06 55.1 69 46.4
Cc05_g10820 Coffea canephora HOM05D000054 ORTHO05D000171 2.5e-06 55.1 68 47.1
Migut.M00993 Erythranthe guttata HOM05D000054 ORTHO05D000171 3.2e-06 54.7 71 42.3
FAN21G0360 Fragaria x ananassa HOM05D000054 ORTHO05D000171 3.2e-06 54.7 59 49.2
FAN21G0760 Fragaria x ananassa HOM05D000054 ORTHO05D000171 3.2e-06 54.7 59 49.2
FAN21G2154 Fragaria x ananassa HOM05D000054 ORTHO05D000171 3.2e-06 54.7 42 59.5
Nn3g21036 Nelumbo nucifera HOM05D000054 ORTHO05D000171 3.2e-06 54.7 42 64.3
CSS0033311 Camellia sinensis var. sinensis HOM05D000054 ORTHO05D000171 4.2e-06 54.3 42 59.5
Eucgr.E02842 Eucalyptus grandis HOM05D000054 ORTHO05D000171 4.2e-06 54.3 61 49.2
FvH4_3g07044 Fragaria vesca HOM05D000054 ORTHO05D000171 4.2e-06 54.3 70 44.3
Nn3g21030 Nelumbo nucifera HOM05D000054 ORTHO05D000171 4.2e-06 54.3 41 58.5
RcHm_v2.0_Chr5g0012091 Rosa chinensis HOM05D000054 ORTHO05D000171 4.2e-06 54.3 48 56.2
Psat7g067280 Pisum sativum HOM05D000054 ORTHO05D000171 5.5e-06 53.9 40 57.5
Ciclev10014125m.g Citrus clementina HOM05D000054 ORTHO05D000171 7.1e-06 53.5 65 44.6
Cc05_g10830 Coffea canephora HOM05D000054 ORTHO05D000171 7.1e-06 53.5 68 42.6
Haze_05431 Corylus avellana HOM05D000054 ORTHO05D000171 7.1e-06 53.5 31 80.6
FAN25G2900 Fragaria x ananassa HOM05D000054 ORTHO05D000171 7.1e-06 53.5 41 61.0
Lalb_Chr01g0016471 Lupinus albus HOM05D000054 ORTHO05D000171 7.1e-06 53.5 42 57.1
PSO063G1391 Papaver somniferum HOM05D000054 ORTHO05D000171 7.1e-06 53.5 71 42.3
PSO675G0994 Papaver somniferum HOM05D000054 ORTHO05D000171 9.3e-06 53.1 71 42.3
Sopen02g020800 Solanum pennellii HOM05D000054 ORTHO05D002584 9.3e-06 53.1 70 44.3


User provided reference genes

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