Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020920 Camellia sinensis var. sinensis HOM05D003930 ORTHO05D004742 1.2e-85 319.7 155 100.0
CSS0041791 Camellia sinensis var. sinensis HOM05D003930 ORTHO05D004742 1.2e-75 286.6 154 90.9
CSS0044494 Camellia sinensis var. sinensis HOM05D003930 ORTHO05D004742 2.0e-59 232.6 155 73.5
CSS0013148 Camellia sinensis var. sinensis HOM05D003930 ORTHO05D004742 2.6e-59 232.3 155 73.5
Glyma.02G102500 Glycine max HOM05D003930 ORTHO05D004742 2.2e-58 229.2 154 70.8
Actinidia17870 Actinidia chinensis HOM05D003930 ORTHO05D004742 4.1e-57 224.9 154 72.1
QL11p035705 Quercus lobata HOM05D003930 ORTHO05D004742 6.0e-56 221.1 154 69.5
Thecc.02G102200 Theobroma cacao HOM05D003930 ORTHO05D004742 3.0e-55 218.8 154 69.5
Duzib132G0860 Durio zibethinus HOM05D003930 ORTHO05D004742 3.9e-55 218.4 154 68.8
Potri.004G140400 Populus trichocarpa HOM05D003930 ORTHO05D004742 3.9e-55 218.4 154 68.2
Glyma.07G213800 Glycine max HOM05D003930 ORTHO05D004742 5.1e-55 218.0 154 68.8
Haze_10085 Corylus avellana HOM05D003930 ORTHO05D004742 1.9e-54 216.1 154 68.8
Gohir.A13G041100 Gossypium hirsutum HOM05D003930 ORTHO05D004742 2.5e-54 215.7 154 70.8
Phvul.003G027700 Phaseolus vulgaris HOM05D003930 ORTHO05D004742 2.5e-54 215.7 154 68.2
Cfa004526 Carpinus fangiana HOM05D003930 ORTHO05D004742 7.3e-54 214.2 154 68.2
Prupe.8G127000 Prunus persica HOM05D003930 ORTHO05D004742 9.5e-54 213.8 154 68.8
Gohir.D13G039800 Gossypium hirsutum HOM05D003930 ORTHO05D004742 1.2e-53 213.4 154 69.5
Gorai.013G044700 Gossypium raimondii HOM05D003930 ORTHO05D004742 1.2e-53 213.4 154 69.5
Sabra04G0092300 Salix brachista HOM05D003930 ORTHO05D004742 6.2e-53 211.1 154 68.2
Ca_18700_v3 Cicer arietinum L. HOM05D003930 ORTHO05D004742 1.1e-52 210.3 154 64.3
TWI31G0582 Tripterygium wilfordii HOM05D003930 ORTHO05D004742 5.2e-52 208.0 152 65.8
Cpa.g.c33779.1 Carica papaya HOM05D003930 ORTHO05D004742 8.9e-52 207.2 147 66.7
Gohir.D04G162000 Gossypium hirsutum HOM05D003930 ORTHO05D004742 5.8e-51 204.5 131 74.8
Hma1.2p1_0370F.1_g137710 Hydrangea macrophylla HOM05D003930 ORTHO05D004742 5.8e-51 204.5 154 67.5
Lj4g0000678 Lotus japonicus HOM05D003930 ORTHO05D004742 5.8e-51 204.5 154 64.9
Potri.009G100600 Populus trichocarpa HOM05D003930 ORTHO05D004742 5.8e-51 204.5 154 63.6
Atru.chr5.2682 Acer truncatum HOM05D003930 ORTHO05D004742 7.6e-51 204.1 154 61.0
Gorai.012G150000 Gossypium raimondii HOM05D003930 ORTHO05D004742 7.6e-51 204.1 131 74.8
COL.COLO4_32641 Corchorus olitorius HOM05D003930 ORTHO05D004742 2.2e-50 202.6 154 64.9
CiPaw.06G172100 Carya illinoinensis HOM05D003930 ORTHO05D004742 2.9e-50 202.2 157 65.6
MD05G1082600 Malus domestica HOM05D003930 ORTHO05D004742 3.8e-50 201.8 154 65.6
CANSAT25G3720 Cannabis sativa HOM05D003930 ORTHO05D004742 1.1e-49 200.3 150 65.3
Gohir.A04G120500 Gossypium hirsutum HOM05D003930 ORTHO05D004742 1.1e-49 200.3 131 73.3
Cfa004527 Carpinus fangiana HOM05D003930 ORTHO05D004742 1.9e-49 199.5 154 65.6
Duzib248G1240 Durio zibethinus HOM05D003930 ORTHO05D004742 9.2e-49 197.2 154 66.2
Actinidia27960 Actinidia chinensis HOM05D003930 ORTHO05D004742 1.6e-48 196.4 141 69.5
RcHm_v2.0_Chr6g0257731 Rosa chinensis HOM05D003930 ORTHO05D004742 3.9e-47 191.8 132 72.0
Dinv15721 Davidia involucrata HOM05D003930 ORTHO05D004742 5.1e-47 191.4 154 62.3
Medtr4g085820 Medicago truncatula HOM05D003930 ORTHO05D004742 3.3e-46 188.7 149 60.4
Dinv42164 Davidia involucrata HOM05D006107 ORTHO05D007455 5.6e-46 188.0 123 75.6
EL10Ac4g08963 Beta vulgaris HOM05D003930 ORTHO05D004742 9.6e-46 187.2 151 60.3
Hund22179 Selenicereus undatus HOM05D003930 ORTHO05D004742 2.8e-45 185.7 152 61.8
TPR.G12531 Trifolium pratense HOM05D003930 ORTHO05D004742 6.2e-45 184.5 154 56.5
Cc02_g18900 Coffea canephora HOM05D003930 ORTHO05D004742 1.8e-44 183.0 154 57.1
Eucgr.I01138 Eucalyptus grandis HOM05D003930 ORTHO05D004742 2.4e-44 182.6 154 62.3
FAN27G3276 Fragaria x ananassa HOM05D003930 ORTHO05D004742 2.4e-44 182.6 155 61.3
PGSC0003DMG400025886 Solanum tuberosum HOM05D003930 ORTHO05D004742 2.4e-44 182.6 139 64.0
CAN.G1041.40 Capsicum annuum HOM05D003930 ORTHO05D004742 3.1e-44 182.2 128 67.2
Lalb_Chr05g0219241 Lupinus albus HOM05D003930 ORTHO05D004742 3.1e-44 182.2 150 59.3
FvH4_2g05850 Fragaria vesca HOM05D003930 ORTHO05D004742 4.0e-44 181.8 155 61.3
Solyc01g108010.3 Solanum lycopersicum HOM05D003930 ORTHO05D004742 5.3e-44 181.4 139 62.6
Sopen01g050210 Solanum pennellii HOM05D003930 ORTHO05D004742 6.9e-44 181.0 139 62.6
arahy.Tifrunner.gnm1.ann1.M5SG57 Arachis hypogaea HOM05D003930 ORTHO05D004742 9.0e-44 180.6 148 62.8
Psat7g122880 Pisum sativum HOM05D003930 ORTHO05D004742 2.0e-43 179.5 154 57.1
arahy.Tifrunner.gnm1.ann1.SW2MKB Arachis hypogaea HOM05D003930 ORTHO05D004742 2.6e-43 179.1 148 62.2
FAN20G2678 Fragaria x ananassa HOM05D003930 ORTHO05D004742 5.8e-43 177.9 155 61.3
FAN24G1823 Fragaria x ananassa HOM05D003930 ORTHO05D004742 7.6e-43 177.6 151 60.9
Lj5A210G92 Lonicera japonica HOM05D003930 ORTHO05D004742 7.6e-43 177.6 145 60.0
Peaxi162Scf00016g00198 Petunia axillaris HOM05D003930 ORTHO05D004742 9.9e-43 177.2 141 60.3
FAN15G2327 Fragaria x ananassa HOM05D003930 ORTHO05D004742 2.9e-42 175.6 155 60.6
Hma1.2p1_0474F.1_g160500 Hydrangea macrophylla HOM05D003930 ORTHO05D004742 2.9e-42 175.6 127 68.5
arahy.Tifrunner.gnm1.ann1.L91QGB Arachis hypogaea HOM05D003930 ORTHO05D004742 4.9e-42 174.9 148 62.2
GSVIVG01031726001 Vitis vinifera HOM05D003930 ORTHO05D004742 4.9e-42 174.9 117 70.9
Nitab4.5_0003080g0070 Nicotiana tabacum HOM05D003930 ORTHO05D004742 8.4e-42 174.1 140 62.1
Ah.06g191740 Amaranthus hybridus HOM05D003930 ORTHO05D004742 1.1e-41 173.7 137 62.8
Hma1.2p1_0474F.1_g160520 Hydrangea macrophylla HOM05D003930 ORTHO05D004742 2.4e-41 172.6 154 59.7
Lalb_Chr16g0384791 Lupinus albus HOM05D003930 ORTHO05D004742 2.4e-41 172.6 129 64.3
AUR62039036 Chenopodium quinoa HOM05D003930 ORTHO05D004742 3.2e-41 172.2 151 57.6
AUR62004802 Chenopodium quinoa HOM05D003930 ORTHO05D004742 1.6e-40 169.9 138 62.3
ClCG05G009950 Citrullus lanatus HOM05D003930 ORTHO05D004742 1.6e-40 169.9 150 58.0
ECA236G2111 Erigeron canadensis HOM05D003930 ORTHO05D004742 1.6e-40 169.9 131 62.6
Oeu007293.1 Olea europaea HOM05D003930 ORTHO05D004742 1.6e-40 169.9 140 62.1
Oeu007295.1 Olea europaea HOM05D003930 ORTHO05D004742 1.6e-40 169.9 140 62.1
Peaxi162Scf00003g00236 Petunia axillaris HOM05D003930 ORTHO05D004742 1.6e-40 169.9 128 65.6
Ciclev10028188m.g Citrus clementina HOM05D003930 ORTHO05D004742 2.1e-40 169.5 145 58.6
CiPaw.05G006900 Carya illinoinensis HOM05D003930 ORTHO05D004742 3.5e-40 168.7 130 64.6
Nitab4.5_0001428g0110 Nicotiana tabacum HOM05D003930 ORTHO05D004742 4.6e-40 168.3 140 60.0
Oeu013718.1 Olea europaea HOM05D003930 ORTHO05D004742 4.6e-40 168.3 153 55.6
Sopen10g021340 Solanum pennellii HOM05D003930 ORTHO05D004742 4.6e-40 168.3 148 57.4
SalBow6G5413 Salvia bowleyana HOM05D003930 ORTHO05D004742 6.0e-40 167.9 131 62.6
CsaV3_3G018620 Cucumis sativus L. HOM05D003930 ORTHO05D004742 1.3e-39 166.8 150 56.7
PGR142G0103 Punica granatum HOM05D003930 ORTHO05D004742 2.3e-39 166.0 130 64.6
Manes.10G079100 Manihot esculenta HOM05D003930 ORTHO05D004742 6.6e-39 164.5 109 68.8
SalBow3G1970 Salvia bowleyana HOM05D003930 ORTHO05D004742 1.5e-38 163.3 144 56.9
Sed0007922 Sechium edule HOM05D003930 ORTHO05D004742 1.9e-38 162.9 137 62.0
MELO3C019504.2 Cucumis melo HOM05D003930 ORTHO05D004742 2.5e-38 162.5 148 56.1
PGSC0003DMG401006212 Solanum tuberosum HOM05D003930 ORTHO05D004742 2.5e-38 162.5 125 61.6
Rhsim05G0086200 Rhododendron simsii HOM05D003930 ORTHO05D004742 3.3e-38 162.2 154 55.8
MSTRG.27730 Avicennia marina HOM05D003930 ORTHO05D004742 5.6e-38 161.4 144 54.9
DCAR_029071 Daucus carota HOM05D003930 ORTHO05D004742 5.6e-38 161.4 156 53.8
MSTRG.5360 Avicennia marina HOM05D003930 ORTHO05D004742 7.3e-38 161.0 139 56.8
vmacro19507 Vaccinium macrocarpon HOM05D003930 ORTHO05D004742 4.8e-37 158.3 154 54.5
Sed0015817 Sechium edule HOM05D003930 ORTHO05D004742 1.4e-36 156.8 157 56.7
TAR371G1126 Trochodendron aralioides HOM05D003930 ORTHO05D004742 1.8e-36 156.4 137 65.0
TAR622G1431 Trochodendron aralioides HOM05D003930 ORTHO05D004742 5.3e-36 154.8 134 61.2
Lsat_1_v5_gn_7_86880 Lactuca sativa HOM05D003930 ORTHO05D004742 2.2e-34 149.4 131 60.3
PSO409G0037 Papaver somniferum HOM05D003930 ORTHO05D004742 2.4e-33 146.0 134 58.2
THA.LOC104804376 Tarenaya hassleriana HOM05D003930 ORTHO05D004742 2.4e-33 146.0 124 58.9
PSO676G0016 Papaver somniferum HOM05D003930 ORTHO05D004742 3.2e-33 145.6 134 56.7
TAR374G0546 Trochodendron aralioides HOM05D003930 ORTHO05D004742 3.2e-33 145.6 137 59.1
MSTRG.16733 Avicennia marina HOM05D003930 ORTHO05D004742 5.4e-33 144.8 143 52.4
Aa31LG8G13250 Aethionema arabicum HOM05D003930 ORTHO05D004742 9.3e-33 144.1 123 56.9
BcaC06g36064 Brassica carinata HOM05D003930 ORTHO05D004742 9.3e-33 144.1 150 52.0
C07p08330 Brassica napus HOM05D003930 ORTHO05D004742 9.3e-33 144.1 150 52.0
BolC7t41246H Brassica oleracea HOM05D003930 ORTHO05D004742 9.3e-33 144.1 150 52.0
PSO063G0718 Papaver somniferum HOM05D003930 ORTHO05D004742 1.2e-32 143.7 131 58.0
BcaB03g16302 Brassica carinata HOM05D003930 ORTHO05D004742 1.6e-32 143.3 120 58.3
BraA07t28314Z Brassica rapa HOM05D003930 ORTHO05D004742 3.5e-32 142.1 152 50.7
MBI16_g30409_MAGBIO Magnolia biondii HOM05D003930 ORTHO05D004742 3.5e-32 142.1 132 56.8
Nn3g17394 Nelumbo nucifera HOM05D003930 ORTHO05D004742 4.6e-32 141.7 142 57.0
TPR.G12726 Trifolium pratense HOM05D003930 ORTHO05D004742 1.3e-31 140.2 149 47.7
A07p05220 Brassica napus HOM05D003930 ORTHO05D004742 1.8e-31 139.8 152 50.0
Carub.0003s2933 Capsella rubella HOM05D003930 ORTHO05D004742 1.8e-31 139.8 148 49.3
AL3G47290 Arabidopsis lyrata HOM05D003930 ORTHO05D004742 5.1e-31 138.3 149 48.3
Sp3g28790 Schrenkiella parvula HOM05D003930 ORTHO05D004742 5.1e-31 138.3 134 56.0
THA.LOC104819571 Tarenaya hassleriana HOM05D003930 ORTHO05D004742 6.7e-31 137.9 133 56.4
Migut.B00358 Erythranthe guttata HOM05D003930 ORTHO05D004742 1.1e-30 137.1 128 56.2
AT2G15560 Arabidopsis thaliana HOM05D003930 ORTHO05D004742 1.9e-30 136.3 149 48.3
CARHR105830 Cardamine hirsuta HOM05D003930 ORTHO05D004742 3.3e-30 135.6 153 47.7
Thhalv10022670m.g Eutrema salsugineum HOM05D003930 ORTHO05D004742 3.3e-30 135.6 155 47.7
Hund06890 Selenicereus undatus HOM05D003930 ORTHO05D004742 5.6e-30 134.8 152 51.3
Sc10g0006490 Simmondsia chinensis HOM05D003930 ORTHO05D004742 5.6e-30 134.8 121 57.0
Nn4g23369 Nelumbo nucifera HOM05D003930 ORTHO05D004742 3.1e-28 129.0 136 50.7
ATR0064G007 Amborella trichopoda HOM05D003930 ORTHO05D004742 2.0e-27 126.3 133 51.9
ECA234G4616 Erigeron canadensis HOM05D003930 ORTHO05D004742 1.3e-26 123.6 130 52.3
HanXRQChr01g0012371 Helianthus annuus HOM05D003930 ORTHO05D004742 1.1e-25 120.6 130 50.8
CDE07G0949 Ceratophyllum demersum HOM05D003930 ORTHO05D004742 5.5e-25 118.2 150 49.3
Aqoxy3G03577 Aquilegia oxysepala HOM05D003930 ORTHO05D004742 9.3e-25 117.5 79 65.8
arahy.Tifrunner.gnm1.ann1.40XXPT Arachis hypogaea HOM05D003930 ORTHO05D004742 9.3e-25 117.5 105 57.1
Oeu044308.1 Olea europaea HOM05D003930 ORTHO05D004742 1.2e-24 117.1 146 43.8
HanXRQChr10g0301841 Helianthus annuus HOM05D003930 ORTHO05D004742 2.7e-24 115.9 130 50.0
Zm00001eb411230 Zea mays HOM05D003930 ORTHO05D004742 4.6e-24 115.2 130 45.4
Solyc10g050190.3 Solanum lycopersicum HOM05D003930 ORTHO05D004742 1.3e-23 113.6 125 49.6
HPP92_020439 Vanilla planifolia HOM05D003930 ORTHO05D004742 5.1e-23 111.7 129 48.1
Lsat_1_v5_gn_5_112341 Lactuca sativa HOM05D003930 ORTHO05D004742 6.7e-23 111.3 116 53.4
SEGI_18127 Sequoiadendron giganteum HOM05D003930 ORTHO05D004742 6.7e-23 111.3 79 62.0
CDE04G3628 Ceratophyllum demersum HOM05D003930 ORTHO05D004742 1.9e-22 109.8 133 48.1
Os08g0230500 Oryza sativa ssp. japonica HOM05D003930 ORTHO05D004742 9.6e-22 107.5 136 43.4
SEGI_00211 Sequoiadendron giganteum HOM05D003930 ORTHO05D004742 3.7e-21 105.5 151 41.1
SGA_v2.0_scaffold922G53727 Striga asiatica HOM05D003930 ORTHO05D004742 3.7e-21 105.5 130 46.9
PSO170G2775 Papaver somniferum HOM05D003930 ORTHO05D004742 1.8e-20 103.2 125 48.8
PSO017G6254 Papaver somniferum HOM05D003930 ORTHO05D004742 4.0e-20 102.1 110 50.0
Pp3c25_11880 Physcomitrium patens HOM05D003930 ORTHO05D004742 7.1e-17 91.3 112 42.9
Pp3c3_5910 Physcomitrium patens HOM05D003930 ORTHO05D004742 2.1e-16 89.7 113 43.4
SHI05294 Sapria himalayana HOM05D003930 ORTHO05D004742 7.9e-16 87.8 121 41.3
unitig_61.g26004 Utricularia gibba HOM05D003930 ORTHO05D004742 1.0e-15 87.4 120 41.7
Pp3c13_3950 Physcomitrium patens HOM05D003930 ORTHO05D004742 1.3e-15 87.0 119 42.0
unitig_26.g9148 Utricularia gibba HOM05D003930 ORTHO05D004742 3.0e-15 85.9 115 43.5
SMO364G0948 Selaginella moellendorffii HOM05D003930 ORTHO05D004742 8.7e-15 84.3 76 48.7
Pp3c16_22960 Physcomitrium patens HOM05D003930 ORTHO05D004742 4.3e-14 82.0 114 41.2
CBR_g45845 Chara braunii HOM05D003930 ORTHO05D004742 9.7e-14 80.9 74 51.4
unitig_749.g14205 Utricularia gibba HOM05D003127 ORTHO05D003709 2.8e-13 79.3 95 42.1
Oeu001781.1 Olea europaea HOM05D003930 ORTHO05D004742 4.1e-12 75.5 67 53.7
ECA234G2042 Erigeron canadensis HOM05D003930 ORTHO05D004742 1.5e-11 73.6 64 53.1
Mapoly0060s0064 Marchantia polymorpha HOM05D003930 ORTHO05D004742 2.6e-11 72.8 72 48.6
unitig_0.g863 Utricularia gibba HOM05D003930 ORTHO05D004742 3.4e-11 72.4 77 41.6
Oeu001779.1 Olea europaea HOM05D003930 ORTHO05D004742 4.5e-11 72.0 65 52.3
Oeu028947.1 Olea europaea HOM05D003930 ORTHO05D004742 5.9e-11 71.6 64 53.1
Oeu001774.1 Olea europaea HOM05D003930 ORTHO05D004742 2.2e-10 69.7 80 46.2
Oeu001767.1 Olea europaea HOM05D003930 ORTHO05D004742 3.8e-10 68.9 80 45.0
AagrBONN_evm.TU.Sc2ySwM_228.4869 Anthoceros agrestis HOM05D003930 ORTHO05D004742 9.4e-09 64.3 73 41.1
Oeu006949.1 Olea europaea HOM05D003930 ORTHO05D290905 5.1e-07 58.5 64 48.4


User provided reference genes

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