Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020916 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 2.1e-112 409.1 207 100.0
CSS0000379 Camellia sinensis var. sinensis HOM05D006956 ORTHO05D008824 9.0e-108 393.7 209 97.6
Dinv19614 Davidia involucrata HOM05D006956 ORTHO05D008824 5.1e-95 351.3 197 86.3
Rhsim04G0005600 Rhododendron simsii HOM05D006956 ORTHO05D008824 1.6e-93 346.3 198 86.9
TAR362G0399 Trochodendron aralioides HOM05D006956 ORTHO05D008824 7.6e-91 337.4 197 83.8
Hma1.2p1_0334F.1_g128720 Hydrangea macrophylla HOM05D006956 ORTHO05D008824 1.0e-90 337.0 197 81.7
Nn7g38051 Nelumbo nucifera HOM05D006956 ORTHO05D008824 1.3e-90 336.7 196 83.2
QL04p076576 Quercus lobata HOM05D006956 ORTHO05D008824 3.8e-90 335.1 197 81.2
vmacro00957 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 5.0e-90 334.7 197 84.3
MD10G1203100 Malus domestica HOM05D006956 ORTHO05D008824 2.5e-89 332.4 201 79.1
Peaxi162Scf00286g00448 Petunia axillaris HOM05D006956 ORTHO05D008824 4.2e-89 331.6 197 81.7
Haze_03154 Corylus avellana HOM05D006956 ORTHO05D008824 9.3e-89 330.5 201 79.1
Cfa010806 Carpinus fangiana HOM05D006956 ORTHO05D008824 2.1e-88 329.3 192 82.3
Solyc09g098220.3 Solanum lycopersicum HOM05D006956 ORTHO05D008824 2.1e-88 329.3 205 79.0
Sopen09g036160 Solanum pennellii HOM05D006956 ORTHO05D008824 2.1e-88 329.3 205 79.0
TWI39G0297 Tripterygium wilfordii HOM05D006956 ORTHO05D008824 2.1e-88 329.3 197 81.7
COL.COLO4_07377 Corchorus olitorius HOM05D006956 ORTHO05D008824 2.7e-88 328.9 197 80.7
Potri.001G439000 Populus trichocarpa HOM05D006956 ORTHO05D008824 2.7e-88 328.9 194 83.0
Gorai.007G335600 Gossypium raimondii HOM05D006956 ORTHO05D008824 3.6e-88 328.6 202 79.2
Prupe.4G139000 Prunus persica HOM05D006956 ORTHO05D008824 4.6e-88 328.2 192 80.2
Sabra16G0296900 Salix brachista HOM05D006956 ORTHO05D008824 7.9e-88 327.4 204 79.4
CiPaw.11G066300 Carya illinoinensis HOM05D006956 ORTHO05D008824 1.0e-87 327.0 197 78.7
CAN.G710.39 Capsicum annuum HOM05D006956 ORTHO05D008824 6.7e-87 324.3 206 77.7
Thecc.07G151600 Theobroma cacao HOM05D006956 ORTHO05D008824 2.5e-86 322.4 197 79.2
Gohir.A11G291500 Gossypium hirsutum HOM05D006956 ORTHO05D008824 4.3e-86 321.6 192 81.2
Cc05_g16140 Coffea canephora HOM05D006956 ORTHO05D008824 7.4e-86 320.9 198 77.8
Phvul.005G057800 Phaseolus vulgaris HOM05D006956 ORTHO05D008824 7.4e-86 320.9 207 74.9
Manes.06G172400 Manihot esculenta HOM05D006956 ORTHO05D008824 8.2e-85 317.4 207 77.3
FvH4_3g15651 Fragaria vesca HOM05D006956 ORTHO05D008824 1.4e-84 316.6 197 76.1
Psat1g012040 Pisum sativum HOM05D006956 ORTHO05D008824 1.4e-84 316.6 207 75.4
Atru.chr9.1519 Acer truncatum HOM05D006956 ORTHO05D008824 1.8e-84 316.2 197 76.6
VMungo1080G0523 Vigna mungo HOM05D006956 ORTHO05D008824 3.1e-84 315.5 207 73.9
MSTRG.13068 Avicennia marina HOM05D006956 ORTHO05D008824 4.1e-84 315.1 205 73.7
Glyma.15G256600 Glycine max HOM05D006956 ORTHO05D008824 9.1e-84 313.9 207 74.9
Medtr2g069340 Medicago truncatula HOM05D006956 ORTHO05D008824 9.1e-84 313.9 207 73.4
TPR.G9744 Trifolium pratense HOM05D006956 ORTHO05D008824 1.2e-83 313.5 207 73.4
Ciclev10022296m.g Citrus clementina HOM05D006956 ORTHO05D008824 1.5e-83 313.2 203 76.8
RcHm_v2.0_Chr5g0026331 Rosa chinensis HOM05D006956 ORTHO05D008824 2.0e-83 312.8 197 75.1
CANSAT54G1214 Cannabis sativa HOM05D006956 ORTHO05D008824 3.4e-83 312.0 194 79.9
Lj3g0018815 Lotus japonicus HOM05D006956 ORTHO05D008824 3.4e-83 312.0 207 72.9
Migut.H01688 Erythranthe guttata HOM05D006956 ORTHO05D008824 7.7e-83 310.8 197 76.1
FAN21G1707 Fragaria x ananassa HOM05D006956 ORTHO05D008824 2.9e-82 308.9 197 74.1
MELO3C019670.2 Cucumis melo HOM05D006956 ORTHO05D008824 3.8e-82 308.5 201 73.6
Lj3g0016125 Lotus japonicus HOM05D006956 ORTHO05D008824 1.1e-81 307.0 207 72.5
Ca_03670_v3 Cicer arietinum L. HOM05D006956 ORTHO05D008824 1.4e-81 306.6 207 72.9
Nitab4.5_0001526g0100 Nicotiana tabacum HOM05D006956 ORTHO05D008824 1.4e-81 306.6 218 71.1
Lalb_Chr20g0108711 Lupinus albus HOM05D006956 ORTHO05D008824 1.9e-81 306.2 199 73.9
CsaV3_6G013760 Cucumis sativus L. HOM05D006956 ORTHO05D008824 5.5e-81 304.7 202 73.8
PGR142G1185 Punica granatum HOM05D006956 ORTHO05D008824 5.5e-81 304.7 192 77.1
FAN11G3326 Fragaria x ananassa HOM05D006956 ORTHO05D008824 7.2e-81 304.3 214 69.6
Aqoxy1G01495 Aquilegia oxysepala HOM05D006956 ORTHO05D008824 2.7e-80 302.4 201 72.6
Eucgr.A00498 Eucalyptus grandis HOM05D006956 ORTHO05D008824 7.9e-80 300.8 195 74.9
SalBow5G4858 Salvia bowleyana HOM05D006956 ORTHO05D008824 1.1e-78 297.0 197 73.1
ClCG02G018480 Citrullus lanatus HOM05D006956 ORTHO05D008824 1.5e-78 296.6 221 67.0
arahy.Tifrunner.gnm1.ann1.JC2BA5 Arachis hypogaea HOM05D006956 ORTHO05D008824 3.3e-78 295.4 195 71.3
BraA09t41455Z Brassica rapa HOM05D006956 ORTHO05D008824 8.2e-77 290.8 190 71.6
GSVIVG01020406001 Vitis vinifera HOM05D006956 ORTHO05D008824 1.1e-76 290.4 177 80.8
Thhalv10008810m.g Eutrema salsugineum HOM05D006956 ORTHO05D008824 1.4e-76 290.0 191 71.2
C08p44410 Brassica napus HOM05D006956 ORTHO05D008824 1.8e-76 289.7 190 70.5
BolC8t51982H Brassica oleracea HOM05D006956 ORTHO05D008824 2.4e-76 289.3 190 71.6
A09p60820 Brassica napus HOM05D006956 ORTHO05D008824 4.1e-76 288.5 190 71.1
AT1G16590 Arabidopsis thaliana HOM05D006956 ORTHO05D008824 6.9e-76 287.7 191 69.1
THA.LOC104808124 Tarenaya hassleriana HOM05D006956 ORTHO05D008824 7.7e-75 284.3 202 67.3
AL1G28750 Arabidopsis lyrata HOM05D006956 ORTHO05D008824 1.0e-74 283.9 191 71.2
Cfa010808 Carpinus fangiana HOM05D006956 ORTHO05D008824 1.3e-74 283.5 178 78.7
arahy.Tifrunner.gnm1.ann1.82TPB7 Arachis hypogaea HOM05D006956 ORTHO05D008824 5.0e-74 281.6 226 61.9
SGA_v2.0_scaffold49G18176 Striga asiatica HOM05D006956 ORTHO05D008824 6.5e-74 281.2 196 70.4
CARHR017060 Cardamine hirsuta HOM05D006956 ORTHO05D008824 8.5e-74 280.8 195 68.2
HPP92_011671 Vanilla planifolia HOM05D006956 ORTHO05D008824 1.4e-73 280.0 196 65.3
PGSC0003DMG400014067 Solanum tuberosum HOM05D006956 ORTHO05D008466 2.5e-73 279.3 166 78.9
AUR62042418 Chenopodium quinoa HOM05D006956 ORTHO05D008824 6.1e-72 274.6 189 68.8
AUR62026907 Chenopodium quinoa HOM05D006956 ORTHO05D008824 8.0e-72 274.2 190 68.9
Aa31LG7G1120 Aethionema arabicum HOM05D006956 ORTHO05D008824 1.4e-71 273.5 199 66.8
Zm00001eb198240 Zea mays HOM05D006956 ORTHO05D008824 2.0e-70 269.6 197 65.0
Carub.0001s1634 Capsella rubella HOM05D006956 ORTHO05D008824 4.8e-69 265.0 190 65.8
CDE05G1956 Ceratophyllum demersum HOM05D003342 ORTHO05D003861 3.1e-68 262.3 196 66.3
PSO210G3417 Papaver somniferum HOM05D006956 ORTHO05D008824 2.2e-66 256.1 191 66.5
PSO223G0077 Papaver somniferum HOM05D006956 ORTHO05D008824 3.8e-66 255.4 191 67.0
Sp1g14740 Schrenkiella parvula HOM05D006956 ORTHO05D008824 8.5e-66 254.2 192 63.5
MBI18_g45405_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 6.1e-64 248.1 157 73.9
Sc08g0007560 Simmondsia chinensis HOM05D006956 ORTHO05D008824 5.2e-63 245.0 158 72.8
HanXRQChr08g0231891 Helianthus annuus HOM05D006956 ORTHO05D008824 9.1e-60 234.2 197 58.4
ECA247G3084 Erigeron canadensis HOM05D006956 ORTHO05D008824 5.0e-58 228.4 190 58.4
Sed0013658 Sechium edule HOM05D006956 ORTHO05D008824 3.2e-57 225.7 153 70.6
QL04p076191 Quercus lobata HOM05D006956 ORTHO05D008824 6.3e-53 211.5 127 76.4
QL93p0133_0021 Quercus lobata HOM05D006956 ORTHO05D008824 6.3e-53 211.5 127 76.4
Actinidia35432 Actinidia chinensis HOM05D006956 ORTHO05D008824 1.6e-48 196.8 141 73.8
Prupe.4G141800 Prunus persica HOM05D006956 ORTHO05D008824 1.6e-48 196.8 124 76.6
FAN25G3578 Fragaria x ananassa HOM05D006956 ORTHO05D008824 1.0e-47 194.1 132 70.5
RcHm_v2.0_Chr5g0026311 Rosa chinensis HOM05D006956 ORTHO05D008824 8.9e-47 191.0 197 52.8
Prupe.4G139100 Prunus persica HOM05D006956 ORTHO05D008824 5.7e-46 188.3 163 60.7
AagrBONN_evm.TU.Sc2ySwM_368.712 Anthoceros agrestis HOM05D006956 ORTHO05D008824 2.2e-45 186.4 180 51.1
MD17G1180100 Malus domestica HOM05D006956 ORTHO05D008824 1.6e-43 180.3 127 70.1
SMO340G0149 Selaginella moellendorffii HOM05D006956 ORTHO05D008824 3.6e-40 169.1 186 44.1
Lsat_1_v5_gn_6_63040 Lactuca sativa HOM05D006956 ORTHO05D008824 1.0e-39 167.5 167 52.7
Pp3c4_6830 Physcomitrium patens HOM05D006956 ORTHO05D008824 7.5e-38 161.4 195 44.1
Pp3c4_6840 Physcomitrium patens HOM05D006956 ORTHO05D008824 1.4e-36 157.1 191 41.4
SEGI_37897 Sequoiadendron giganteum HOM05D006956 ORTHO05D008824 6.0e-35 151.8 132 56.1
vmacro22747 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 6.8e-31 138.3 174 50.0
Mapoly0023s0023 Marchantia polymorpha HOM05D006956 ORTHO05D008824 9.8e-30 134.4 140 47.1
vmacro09782 Vaccinium macrocarpon HOM05D006956 ORTHO05D008824 1.9e-28 130.2 65 90.8
FAN16G1261 Fragaria x ananassa HOM05D006956 ORTHO05D008824 4.6e-27 125.6 109 58.7
Potri.011G142501 Populus trichocarpa HOM05D006956 ORTHO05D008824 3.0e-26 122.9 91 68.1
Glyma.08G170300 Glycine max HOM05D006956 ORTHO05D008824 7.3e-25 118.2 161 44.7
Lju41A37T48 Lonicera japonica HOM05D006956 ORTHO05D008824 1.2e-24 117.5 79 73.4
ATR0753G159 Amborella trichopoda HOM05D006956 ORTHO05D008824 9.9e-22 107.8 81 67.9
MBI18_g44288_MAGBIO Magnolia biondii HOM05D006956 ORTHO05D008824 1.3e-21 107.5 69 73.9
MD05G1220700 Malus domestica HOM05D006956 ORTHO05D008824 3.2e-20 102.8 88 55.7
RcHm_v2.0_Chr5g0031421 Rosa chinensis HOM05D006956 ORTHO05D008824 4.6e-19 99.0 108 57.4
Lalb_Chr25g0284921 Lupinus albus HOM05D006956 ORTHO05D008824 8.6e-18 94.7 161 37.3
Cpa.g.sc67.70 Carica papaya HOM05D006956 ORTHO05D008824 1.6e-16 90.5 64 65.6
Cre13.g575333 Chlamydomonas reinhardtii HOM05D006956 ORTHO05D008824 2.1e-16 90.1 197 30.5
Lju41A37T47 Lonicera japonica HOM05D006956 ORTHO05D008824 1.7e-10 70.5 44 75.0
SHI21449 Sapria himalayana HOM05D000257 ORTHO05D008466 2.3e-10 70.1 39 74.4
MCO02G468 Micromonas commoda HOM05D006956 ORTHO05D008824 9.9e-06 54.7 85 40.0
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 9.9e-06 54.7 149 26.2


User provided reference genes

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