Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020901 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 2.4e-207 725.3 381 100.0
CSS0027428 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 3.1e-199 698.4 381 91.9
CSS0034175 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 2.9e-152 542.3 377 74.0
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.8e-101 373.6 390 57.2
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.8e-88 329.3 316 58.9
CSS0010034 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 1.8e-61 240.7 262 53.8
CSS0048670 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 4.0e-61 239.6 263 53.2
CSS0005392 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 8.3e-59 231.9 149 80.5
CSS0001395 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 1.2e-49 201.4 170 64.7
CSS0024396 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 2.9e-27 127.1 282 35.5
CSS0040684 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 5.3e-21 106.3 160 45.6
Rhsim05G0157800 Rhododendron simsii HOM05D000876 ORTHO05D000285 3.2e-18 97.1 319 27.3
Rhsim06G0093500 Rhododendron simsii HOM05D000876 ORTHO05D000285 7.1e-18 95.9 319 27.0
Rhsim10G0146900 Rhododendron simsii HOM05D000876 ORTHO05D000285 7.1e-18 95.9 319 27.3
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 1.3e-16 91.7 299 25.8
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 1.8e-16 91.3 299 25.8
Rhsim09G0017300 Rhododendron simsii HOM05D019962 ORTHO05D000285 6.7e-16 89.4 269 28.3
Rhsim06G0024000 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.9e-15 87.8 325 26.5
Rhsim04G0159900 Rhododendron simsii HOM05D000876 ORTHO05D000285 1.3e-14 85.1 275 28.0
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 2.8e-14 84.0 299 25.1
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 4.8e-14 83.2 319 27.0
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.8e-13 81.3 301 33.9
Hma1.2p1_0228F.1_g096560 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 3.1e-13 80.5 174 30.5
Rhsim09G0041300 Rhododendron simsii HOM05D000876 ORTHO05D000285 4.1e-13 80.1 310 25.5
Hma1.2p1_2073F.1_g313200 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 5.3e-13 79.7 258 25.2
Actinidia04386 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.2e-12 78.6 315 24.4
Actinidia07377 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.2e-12 78.6 315 24.4
Actinidia15148 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.2e-12 78.6 315 24.4
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 1.2e-12 78.6 298 26.8
Hma1.2p1_1035F.1_g250490 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 2.0e-12 77.8 167 30.5
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 2.6e-12 77.4 299 25.4
Potri.017G062600 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.8e-12 76.3 248 25.8
arahy.Tifrunner.gnm1.ann1.2911W9 Arachis hypogaea HOM05D000876 ORTHO05D000285 1.0e-11 75.5 300 30.3
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.7e-11 74.7 305 23.9
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 1.7e-11 74.7 289 29.1
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 1.7e-11 74.7 289 31.5
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 1.7e-11 74.7 301 24.3
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 2.2e-11 74.3 294 25.5
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 2.2e-11 74.3 301 25.2
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 2.2e-11 74.3 301 25.2
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 2.2e-11 74.3 303 24.1
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.2e-11 74.3 344 24.4
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 2.9e-11 73.9 287 31.0
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 3.8e-11 73.6 295 25.4
Potri.008G176600 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.4e-10 71.6 274 25.5
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-10 71.2 274 24.1
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 3.2e-10 70.5 297 24.9
Potri.003G006700 Populus trichocarpa HOM05D000876 ORTHO05D000285 3.2e-10 70.5 300 23.7
Potri.010G132850 Populus trichocarpa HOM05D000876 ORTHO05D000285 3.2e-10 70.5 300 23.7
Potri.005G135800 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.2e-10 70.1 313 25.2
Rhsim06G0077800 Rhododendron simsii HOM05D000876 ORTHO05D000285 4.2e-10 70.1 175 28.6
Actinidia36308 Actinidia chinensis HOM05D000876 ORTHO05D000285 5.5e-10 69.7 325 23.7
Potri.003G192350 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.5e-10 69.7 313 25.2
Potri.004G230401 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.5e-10 69.7 313 25.2
Peaxi162Scf00002g02220 Petunia axillaris HOM05D000876 ORTHO05D000285 9.3e-10 68.9 296 22.3
Potri.001G402200 Populus trichocarpa HOM05D000876 ORTHO05D000285 9.3e-10 68.9 300 24.0
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-09 68.6 307 23.8
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 1.6e-09 68.2 299 25.8
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 2.1e-09 67.8 299 25.1
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 2.1e-09 67.8 288 25.0
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 2.7e-09 67.4 227 25.6
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 2.7e-09 67.4 306 23.9
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 2.7e-09 67.4 306 23.9
Rhsim11G0045400 Rhododendron simsii HOM05D019962 ORTHO05D000285 2.7e-09 67.4 371 24.8
Potri.014G026000 Populus trichocarpa HOM05D000876 ORTHO05D000285 3.5e-09 67.0 300 24.0
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 3.5e-09 67.0 306 23.5
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 4.6e-09 66.6 292 24.3
HanXRQChr14g0461341 Helianthus annuus HOM05D000876 ORTHO05D000285 7.9e-09 65.9 321 23.7
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-08 65.5 297 22.6
Gorai.004G114400 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.0e-08 65.5 243 30.5
arahy.Tifrunner.gnm1.ann1.Z5ZQ3Q Arachis hypogaea HOM05D000034 ORTHO05D000037 1.3e-08 65.1 172 27.9
Potri.001G182200 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.3e-08 65.1 220 25.9
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.8e-08 64.7 281 21.7
PSO507G0009 Papaver somniferum HOM05D000876 ORTHO05D000285 1.8e-08 64.7 266 23.7
Potri.005G153700 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.8e-08 64.7 274 24.5
Potri.007G062850 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.8e-08 64.7 297 24.9
Potri.013G144650 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.8e-08 64.7 297 24.9
Potri.014G091925 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.8e-08 64.7 297 24.9
Gorai.007G271200 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.3e-08 64.3 241 24.5
Potri.018G075600 Populus trichocarpa HOM05D000876 ORTHO05D000285 2.3e-08 64.3 300 24.0
TWI60G0714 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 2.3e-08 64.3 278 22.3
CiPaw.04G143900 Carya illinoinensis HOM05D000876 ORTHO05D000285 3.0e-08 63.9 128 28.9
Glyma.04G129400 Glycine max HOM05D000876 ORTHO05D000285 3.0e-08 63.9 116 31.9
Glyma.19G073700 Glycine max HOM05D000876 ORTHO05D000285 3.0e-08 63.9 83 34.9
arahy.Tifrunner.gnm1.ann1.D3784E Arachis hypogaea HOM05D000034 ORTHO05D000037 3.9e-08 63.5 267 25.5
Gorai.005G209400 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.9e-08 63.5 303 27.7
Gorai.008G062400 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.1e-08 63.2 266 27.1
Rhsim02G0065300 Rhododendron simsii HOM05D013584 ORTHO05D016271 5.1e-08 63.2 59 47.5
Rhsim02G0065600 Rhododendron simsii HOM05D013584 ORTHO05D016271 5.1e-08 63.2 59 47.5
Rhsim11G0079300 Rhododendron simsii HOM05D013584 ORTHO05D016271 5.1e-08 63.2 59 47.5
RhsimUnG0240900 Rhododendron simsii HOM05D013584 ORTHO05D016271 5.1e-08 63.2 59 47.5
HanXRQChr05g0143471 Helianthus annuus HOM05D000876 ORTHO05D000285 6.7e-08 62.8 299 21.7
Lj1g0019277 Lotus japonicus HOM05D000876 ORTHO05D000285 6.7e-08 62.8 121 28.1
Potri.005G163200 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.7e-08 62.8 244 24.6
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 6.7e-08 62.8 280 22.9
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 8.7e-08 62.4 267 29.6
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 8.7e-08 62.4 276 21.0
Dinv01349 Davidia involucrata HOM05D013584 ORTHO05D016271 8.7e-08 62.4 65 44.6
Gorai.N004200 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.7e-08 62.4 287 26.8
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 1.1e-07 62.0 227 24.7
Glyma.15G226650 Glycine max HOM05D000876 ORTHO05D000285 1.1e-07 62.0 116 31.0
Lj2g0008174 Lotus japonicus HOM05D000876 ORTHO05D000285 1.1e-07 62.0 264 23.5
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 1.1e-07 62.0 385 25.7
arahy.Tifrunner.gnm1.ann1.7Y6611 Arachis hypogaea HOM05D000034 ORTHO05D000037 1.5e-07 61.6 267 30.3
CANSAT56G0752 Cannabis sativa HOM05D000876 ORTHO05D000285 1.9e-07 61.2 136 27.9
FAN12G2878 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.9e-07 61.2 298 22.1
Glyma.06G250600 Glycine max HOM05D000876 ORTHO05D000285 1.9e-07 61.2 116 31.0
Gorai.004G036300 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.9e-07 61.2 146 31.5
Gorai.008G032400 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.9e-07 61.2 146 31.5
MD12G1140100 Malus domestica HOM05D002354 ORTHO05D002469 1.9e-07 61.2 168 25.6
TWI56G0962 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 1.9e-07 61.2 77 36.4
arahy.Tifrunner.gnm1.ann1.8YPI5A Arachis hypogaea HOM05D000034 ORTHO05D000037 2.5e-07 60.8 172 26.7
arahy.Tifrunner.gnm1.ann1.Z2QP4M Arachis hypogaea HOM05D000034 ORTHO05D000037 2.5e-07 60.8 257 31.5
Dinv30094 Davidia involucrata HOM05D022958 ORTHO05D029230 2.5e-07 60.8 127 29.1
Medtr5g054570 Medicago truncatula HOM05D000876 ORTHO05D000285 2.5e-07 60.8 273 23.8
Hund30880 Selenicereus undatus HOM05D000876 ORTHO05D000285 2.5e-07 60.8 370 23.5
Dinv30374 Davidia involucrata HOM05D013584 ORTHO05D016271 3.3e-07 60.5 78 42.3
Medtr7g029320 Medicago truncatula HOM05D000876 ORTHO05D000285 3.3e-07 60.5 137 31.4
CSS0009559 Camellia sinensis var. sinensis HOM05D000005 ORTHO05D000012 4.3e-07 60.1 59 47.5
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.3e-07 60.1 297 22.6
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 4.3e-07 60.1 306 23.2
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 5.7e-07 59.7 108 29.6
Ciclev10027235m.g Citrus clementina HOM05D000876 ORTHO05D000285 5.7e-07 59.7 87 35.6
Dinv09939 Davidia involucrata HOM05D022958 ORTHO05D029230 5.7e-07 59.7 112 33.9
Potri.008G196901 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.7e-07 59.7 274 21.5
Potri.011G125150 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.7e-07 59.7 146 26.0
Potri.015G137800 Populus trichocarpa HOM05D000876 ORTHO05D000285 5.7e-07 59.7 301 21.9
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 5.7e-07 59.7 292 21.9
CSS0023195 Camellia sinensis var. sinensis HOM05D000007 ORTHO05D000017 7.4e-07 59.3 114 33.3
Oeu044768.1 Olea europaea HOM05D000876 ORTHO05D000285 7.4e-07 59.3 118 31.4
Potri.002G200700 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.4e-07 59.3 216 25.0
Potri.004G097601 Populus trichocarpa HOM05D000876 ORTHO05D000285 7.4e-07 59.3 146 26.0
Aqoxy4G02707 Aquilegia oxysepala HOM05D000876 ORTHO05D000285 9.7e-07 58.9 293 20.1
Migut.F01438 Erythranthe guttata HOM05D000876 ORTHO05D000285 9.7e-07 58.9 102 35.3
Glyma.05G069200 Glycine max HOM05D000876 ORTHO05D000285 9.7e-07 58.9 116 31.0
Gorai.N003000 Gossypium raimondii HOM05D000876 ORTHO05D000285 9.7e-07 58.9 145 26.2
TWI75G0795 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 9.7e-07 58.9 156 26.9
CsaV3_5G004940 Cucumis sativus L. HOM05D000876 ORTHO05D000285 1.3e-06 58.5 283 30.7
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 1.3e-06 58.5 287 22.0
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 1.3e-06 58.5 293 23.9
FAN14G5489 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.3e-06 58.5 264 24.6
Potri.014G061450 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.3e-06 58.5 301 21.9
AUR62033764 Chenopodium quinoa HOM05D000876 ORTHO05D000285 1.6e-06 58.2 272 21.7
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.6e-06 58.2 292 22.6
Gorai.004G036600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.6e-06 58.2 145 25.5
Gorai.011G190800 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.6e-06 58.2 127 27.6
Gorai.013G171200 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.6e-06 58.2 144 26.4
Gorai.013G197100 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.6e-06 58.2 108 29.6
Potri.018G054501 Populus trichocarpa HOM05D000876 ORTHO05D000285 1.6e-06 58.2 241 24.1
FAN09G3146 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.2e-06 57.8 168 25.6
FAN09G3305 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.2e-06 57.8 168 25.6
Gorai.010G169700 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.2e-06 57.8 237 28.3
Gorai.008G247700 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.8e-06 57.4 109 29.4
Potri.015G012100 Populus trichocarpa HOM05D000876 ORTHO05D000285 2.8e-06 57.4 146 26.0
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 3.7e-06 57.0 257 22.6
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.7e-06 57.0 286 23.4
Gorai.011G122600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.7e-06 57.0 144 26.4
Gorai.011G123600 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.7e-06 57.0 144 25.7
FAN09G4256 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.8e-06 56.6 289 23.9
Gorai.001G187700 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.8e-06 56.6 218 28.9
Gorai.011G083200 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.8e-06 56.6 229 21.4
PSO339G2851 Papaver somniferum HOM05D000034 ORTHO05D000037 4.8e-06 56.6 63 34.9
Potri.006G116400 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.8e-06 56.6 147 25.2
Potri.011G094000 Populus trichocarpa HOM05D000876 ORTHO05D000285 4.8e-06 56.6 146 25.3
HanXRQChr10g0300051 Helianthus annuus HOM05D000876 ORTHO05D000285 6.3e-06 56.2 115 25.2
AUR62009858 Chenopodium quinoa HOM05D000034 ORTHO05D000037 8.2e-06 55.8 115 27.0
FvH4_1g10461 Fragaria vesca HOM05D000034 ORTHO05D000037 8.2e-06 55.8 256 21.5
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 8.2e-06 55.8 268 21.3
Gohir.D08G116700 Gossypium hirsutum HOM05D000876 ORTHO05D000285 8.2e-06 55.8 109 28.4
Gorai.004G102900 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.2e-06 55.8 300 21.7
Potri.010G076000 Populus trichocarpa HOM05D000876 ORTHO05D000285 8.2e-06 55.8 119 26.1
Potri.010G190650 Populus trichocarpa HOM05D000876 ORTHO05D000285 8.2e-06 55.8 133 27.1
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 8.2e-06 55.8 272 23.9
TWI75G0526 Tripterygium wilfordii HOM05D000876 ORTHO05D000285 8.2e-06 55.8 156 26.3


User provided reference genes

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