Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.9e-248 862.1 450 100.0
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.1e-246 856.3 450 99.3
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 3.1e-161 572.4 459 70.4
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 5.8e-160 568.2 465 70.5
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.9e-150 536.6 458 66.2
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.8e-129 466.8 465 58.5
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 4.9e-127 458.8 461 60.1
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.1e-126 457.6 462 60.8
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 4.6e-125 452.2 473 58.1
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 4.6e-125 452.2 463 55.5
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 6.7e-124 448.4 445 58.7
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 2.8e-122 443.0 462 57.6
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 3.7e-122 442.6 483 55.3
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.7e-119 433.7 472 55.9
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.9e-119 433.0 451 57.2
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 7.2e-118 428.3 466 56.0
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-117 427.2 455 57.8
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.1e-117 426.8 469 55.2
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 3.6e-117 426.0 464 52.4
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 5.1e-116 422.2 405 63.2
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.4e-113 414.1 444 57.2
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 1.5e-112 410.6 471 55.0
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 3.4e-112 409.5 468 53.6
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 1.0e-111 407.9 418 57.7
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 2.5e-110 403.3 469 54.4
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 2.7e-109 399.8 467 51.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 2.7e-109 399.8 454 54.8
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 6.1e-109 398.7 465 53.1
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 1.4e-108 397.5 444 56.5
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.4e-108 397.5 450 56.4
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.0e-108 396.4 452 52.2
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 3.0e-108 396.4 463 55.5
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 6.7e-108 395.2 457 51.4
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 1.5e-107 394.0 465 50.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 4.4e-107 392.5 445 55.1
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 4.4e-107 392.5 447 53.9
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 4.4e-107 392.5 447 54.8
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 5.7e-107 392.1 419 56.6
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 8.2e-106 388.3 461 53.1
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 8.2e-106 388.3 417 57.6
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.1e-105 387.9 462 52.4
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 5.3e-105 385.6 520 49.0
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 5.3e-105 385.6 469 52.0
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 4.5e-104 382.5 448 51.6
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 4.5e-104 382.5 465 51.6
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 2.2e-103 380.2 504 50.8
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 2.2e-103 380.2 422 56.2
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 6.5e-103 378.6 466 52.8
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 6.5e-103 378.6 466 52.8
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 7.2e-102 375.2 467 52.5
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 8.8e-100 368.2 425 55.3
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.1e-99 367.9 447 51.9
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.5e-99 367.5 451 51.7
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.5e-99 367.5 447 52.8
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 4.4e-99 365.9 463 51.8
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 8.2e-98 361.7 460 50.0
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 8.2e-98 361.7 445 51.2
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 1.1e-97 361.3 464 50.4
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.1e-97 361.3 460 51.3
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 4.1e-97 359.4 448 51.6
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 9.1e-97 358.2 466 52.4
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 2.0e-96 357.1 474 49.6
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 2.0e-96 357.1 449 49.7
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 3.5e-96 356.3 438 52.3
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 8.5e-95 351.7 428 52.3
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.1e-94 351.3 468 49.6
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.5e-94 350.9 425 53.9
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 2.5e-94 350.1 407 54.1
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 5.5e-94 349.0 451 49.9
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-93 347.8 419 52.5
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 4.7e-93 345.9 492 48.0
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.4e-92 344.4 397 53.9
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 6.8e-92 342.0 509 46.2
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.6e-91 340.1 444 48.4
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 2.6e-91 340.1 441 50.6
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 5.3e-89 332.4 440 50.0
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 2.7e-88 330.1 304 61.8
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 1.5e-86 324.3 355 53.5
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 2.7e-85 320.1 467 45.2
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.7e-85 320.1 464 47.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.7e-85 319.3 456 48.9
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 8.0e-85 318.5 465 46.7
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 8.8e-84 315.1 466 46.6
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.4e-83 312.8 470 46.4
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 2.2e-82 310.5 467 45.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.2e-82 310.5 388 51.5
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 1.0e-79 301.6 375 49.9
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.9e-78 297.4 290 57.6
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 2.1e-77 293.9 342 50.6
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.6e-77 293.1 347 53.0
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.0e-76 291.6 437 45.5
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 4.0e-76 289.7 462 44.6
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 7.5e-75 285.4 468 44.0
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 4.9e-74 282.7 470 43.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 6.3e-74 282.3 462 43.9
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 2.3e-71 273.9 439 46.0
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 8.6e-71 271.9 466 42.5
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 9.5e-70 268.5 433 42.3
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 8.0e-69 265.4 362 48.3
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 1.0e-68 265.0 468 42.9
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.3e-68 263.8 357 48.7
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 8.9e-68 261.9 338 50.0
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.2e-67 261.5 247 60.3
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 2.0e-67 260.8 458 43.2
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 7.5e-67 258.8 438 43.2
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.5e-62 243.8 437 43.9
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 3.3e-62 243.4 292 52.4
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 9.5e-62 241.9 360 45.0
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 5.8e-59 232.6 353 45.6
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-56 224.6 228 58.8
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 4.6e-56 223.0 462 39.8
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 4.6e-56 223.0 462 39.8
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 1.5e-54 218.0 294 49.7
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 3.3e-54 216.9 204 59.3
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 4.3e-54 216.5 311 48.6
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-53 214.5 254 53.9
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 2.1e-53 214.2 471 37.8
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 2.8e-53 213.8 365 44.1
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 1.4e-52 211.5 356 41.9
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.3e-52 210.7 317 47.3
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 7.6e-51 205.7 318 43.4
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.1e-49 199.1 274 46.0
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.4e-43 180.3 249 45.8
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.8e-42 176.8 221 53.4
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.9e-41 174.5 175 56.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 4.8e-37 159.8 156 59.0
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 6.2e-37 159.5 469 29.6
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 1.8e-36 157.9 159 53.5
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 6.0e-32 142.9 141 56.7
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.5e-27 128.3 236 40.7
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 6.7e-23 112.8 182 46.7
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.1e-22 112.1 166 50.0
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 4.2e-17 93.6 87 62.1
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.0e-11 74.7 92 44.6
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 2.6e-11 74.3 122 38.5
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.8e-10 70.5 92 44.6
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.1e-09 68.9 102 39.2
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 2.7e-08 64.3 125 37.6
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 2.7e-08 64.3 92 39.1
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 1.1e-06 58.9 102 34.3
DCAR_023757 Daucus carota HOM05D000794 ORTHO05D000616 2.5e-06 57.8 69 43.5


User provided reference genes

Program Settings