Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020880 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 4.1e-171 604.7 331 100.0
Dinv34277 Davidia involucrata HOM05D006297 ORTHO05D007873 3.4e-85 319.3 325 59.1
Actinidia33772 Actinidia chinensis HOM05D006297 ORTHO05D007873 1.0e-84 317.8 357 57.1
Manes.02G129500 Manihot esculenta HOM05D006297 ORTHO05D007873 1.3e-71 274.2 383 48.3
Sabra09G0025100 Salix brachista HOM05D006297 ORTHO05D010418 8.2e-71 271.6 325 52.3
Potri.009G035300 Populus trichocarpa HOM05D006297 ORTHO05D007873 1.2e-69 267.7 345 49.0
Hma1.2p1_0615F.1_g189690 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.5e-69 266.2 319 54.5
PGR119G2469 Punica granatum HOM05D006297 ORTHO05D007873 3.2e-67 259.6 342 50.0
CSS0015831 Camellia sinensis var. sinensis HOM05D006297 ORTHO05D007873 8.0e-66 255.0 338 50.6
Migut.D00880 Erythranthe guttata HOM05D006297 ORTHO05D007873 1.4e-65 254.2 370 47.6
GSVIVG01031399001 Vitis vinifera HOM05D006297 ORTHO05D007873 4.0e-65 252.7 259 59.5
QL01p030412 Quercus lobata HOM05D006297 ORTHO05D007873 3.4e-64 249.6 358 48.6
Nitab4.5_0006916g0050 Nicotiana tabacum HOM05D006297 ORTHO05D007873 1.7e-63 247.3 327 51.4
Peaxi162Scf00481g00328 Petunia axillaris HOM05D006297 ORTHO05D007873 4.8e-63 245.7 303 51.5
CiPaw.13G089900 Carya illinoinensis HOM05D006297 ORTHO05D007873 3.8e-60 236.1 347 48.4
MSTRG.18559 Avicennia marina HOM05D006297 ORTHO05D007873 7.2e-59 231.9 394 42.1
Eucgr.B02311 Eucalyptus grandis HOM05D006297 ORTHO05D007873 7.2e-59 231.9 374 44.4
Rhsim13G0077500 Rhododendron simsii HOM05D000001 ORTHO05D010418 7.2e-59 231.9 383 44.1
Potri.001G243900 Populus trichocarpa HOM05D006297 ORTHO05D007873 8.0e-58 228.4 421 40.4
COL.COLO4_18571 Corchorus olitorius HOM05D006297 ORTHO05D007873 1.5e-56 224.2 283 50.2
TWI79G0566 Tripterygium wilfordii HOM05D000001 ORTHO05D010418 2.8e-55 219.9 350 44.0
Sopen06g032780 Solanum pennellii HOM05D006297 ORTHO05D007873 8.3e-55 218.4 321 47.7
Ciclev10029821m.g Citrus clementina HOM05D006297 ORTHO05D007873 2.4e-54 216.9 318 47.5
Haze_24152 Corylus avellana HOM05D006297 ORTHO05D007873 2.7e-53 213.4 311 47.6
CsaV3_1G034520 Cucumis sativus L. HOM05D006297 ORTHO05D007873 2.7e-53 213.4 339 43.4
MELO3C020609.2 Cucumis melo HOM05D006297 ORTHO05D007873 4.5e-53 212.6 346 43.1
Cc01_g13310 Coffea canephora HOM05D006297 ORTHO05D007873 1.7e-52 210.7 378 42.3
Solyc06g076370.4 Solanum lycopersicum HOM05D006297 ORTHO05D007873 2.9e-52 209.9 320 45.9
Duzib168G2114 Durio zibethinus HOM05D006297 ORTHO05D007873 1.1e-51 208.0 317 45.7
Sed0011562 Sechium edule HOM05D006297 ORTHO05D007873 1.9e-51 207.2 341 41.3
MD11G1095400 Malus domestica HOM05D006297 ORTHO05D007873 2.8e-50 203.4 384 41.4
Prupe.6G070900 Prunus persica HOM05D006297 ORTHO05D007873 2.8e-50 203.4 396 40.2
Lalb_Chr22g0352441 Lupinus albus HOM05D006297 ORTHO05D007873 3.6e-50 203.0 342 41.2
Thecc.09G316300 Theobroma cacao HOM05D006297 ORTHO05D007873 4.7e-50 202.6 331 43.8
Sed0017584 Sechium edule HOM05D006297 ORTHO05D007873 6.1e-50 202.2 343 40.8
TAR369G0304 Trochodendron aralioides HOM05D006297 ORTHO05D007873 6.1e-50 202.2 255 52.2
ClCG03G001300 Citrullus lanatus HOM05D006297 ORTHO05D007873 2.3e-49 200.3 333 42.9
CANSAT54G0582 Cannabis sativa HOM05D006297 ORTHO05D007873 6.8e-49 198.7 376 40.4
PGSC0003DMG400030329 Solanum tuberosum HOM05D006297 ORTHO05D007873 6.8e-49 198.7 250 50.0
CAN.G394.75 Capsicum annuum HOM05D006297 ORTHO05D007873 3.4e-48 196.4 321 43.9
DCAR_007431 Daucus carota HOM05D006297 ORTHO05D000003 2.2e-47 193.7 330 43.6
THA.LOC104799430 Tarenaya hassleriana HOM05D006297 ORTHO05D007873 9.2e-46 188.3 307 42.0
Nn2g13426 Nelumbo nucifera HOM05D006297 ORTHO05D007873 2.0e-45 187.2 430 36.7
Nitab4.5_0023946g0010 Nicotiana tabacum HOM05D006297 ORTHO05D007873 2.3e-44 183.7 314 42.4
Sabra16G0148100 Salix brachista HOM05D000026 ORTHO05D000094 1.9e-43 180.6 348 39.7
Sc12g0001260 Simmondsia chinensis HOM05D006297 ORTHO05D007873 5.6e-43 179.1 362 37.0
SGA_v2.0_scaffold54G19479 Striga asiatica HOM05D006297 ORTHO05D007873 9.5e-43 178.3 339 41.6
Cfa011548 Carpinus fangiana HOM05D006297 ORTHO05D007873 1.2e-42 177.9 309 44.3
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 3.6e-42 176.4 388 38.1
DCAR_018924 Daucus carota HOM05D006297 ORTHO05D007873 8.0e-42 175.3 272 45.2
Ca_20618_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.4e-41 174.5 391 36.6
A06p20810 Brassica napus HOM05D006297 ORTHO05D007873 2.6e-40 170.2 298 39.3
Glyma.15G035500 Glycine max HOM05D006297 ORTHO05D007873 3.4e-40 169.9 382 36.1
Lj3g0003832 Lotus japonicus HOM05D006297 ORTHO05D007873 1.3e-39 167.9 318 38.4
Medtr4g064830 Medicago truncatula HOM05D006297 ORTHO05D007873 6.4e-39 165.6 398 34.9
Lj3g0014453 Lotus japonicus HOM05D006297 ORTHO05D007873 1.1e-38 164.9 348 37.1
Duzib170G0989 Durio zibethinus HOM05D006297 ORTHO05D007873 1.4e-38 164.5 230 49.6
Sp5g14970 Schrenkiella parvula HOM05D006297 ORTHO05D007873 3.2e-38 163.3 364 35.4
BcaB05g23510 Brassica carinata HOM05D006297 ORTHO05D007873 5.4e-38 162.5 379 35.6
Thhalv10002567m.g Eutrema salsugineum HOM05D006297 ORTHO05D007873 9.2e-38 161.8 384 34.1
Lalb_Chr01g0003491 Lupinus albus HOM05D006297 ORTHO05D007873 2.0e-37 160.6 401 35.7
MBI05_g35633_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 6.0e-37 159.1 257 42.0
Glyma.13G338800 Glycine max HOM05D006297 ORTHO05D007873 1.3e-36 157.9 377 36.1
RcHm_v2.0_Chr5g0066301 Rosa chinensis HOM05D006297 ORTHO05D007873 1.7e-36 157.5 513 33.9
C03p70940 Brassica napus HOM05D006297 ORTHO05D007873 5.0e-36 156.0 319 36.7
BolC3t19369H Brassica oleracea HOM05D006297 ORTHO05D007873 5.0e-36 156.0 319 36.7
Glyma.11G136300 Glycine max HOM05D006297 ORTHO05D007873 5.0e-36 156.0 411 34.5
A01p26050 Brassica napus HOM05D006297 ORTHO05D007873 1.1e-35 154.8 376 33.8
BcaC01g01889 Brassica carinata HOM05D006297 ORTHO05D007873 1.5e-35 154.5 319 36.4
BraA01t02522Z Brassica rapa HOM05D006297 ORTHO05D007873 1.5e-35 154.5 331 35.3
SalBow6G6944 Salvia bowleyana HOM05D006297 ORTHO05D007873 1.2e-34 151.4 485 30.7
BcaC09g49771 Brassica carinata HOM05D006297 ORTHO05D007873 1.6e-34 151.0 376 33.0
Aa31LG4G15680 Aethionema arabicum HOM05D006297 ORTHO05D007873 2.8e-34 150.2 346 37.0
Glyma.12G060000 Glycine max HOM05D006297 ORTHO05D007873 2.8e-34 150.2 397 35.5
Psat7g210960 Pisum sativum HOM05D006297 ORTHO05D007873 3.6e-34 149.8 363 34.2
CARHR154920 Cardamine hirsuta HOM05D006297 ORTHO05D007873 1.1e-33 148.3 347 35.7
AL5G25730 Arabidopsis lyrata HOM05D006297 ORTHO05D007873 1.4e-33 147.9 344 33.4
AT3G46750 Arabidopsis thaliana HOM05D006297 ORTHO05D007873 8.9e-33 145.2 347 32.9
Carub.0005s1301 Capsella rubella HOM05D006297 ORTHO05D007873 8.9e-33 145.2 348 33.9
unitig_899.g15423 Utricularia gibba HOM05D006297 ORTHO05D007873 8.9e-33 145.2 334 37.7
Gohir.D07G104500 Gossypium hirsutum HOM05D006297 ORTHO05D007873 1.2e-32 144.8 274 39.1
FvH4_3g36910 Fragaria vesca HOM05D006297 ORTHO05D007873 9.8e-32 141.7 501 30.9
VMungo1127G1804 Vigna mungo HOM05D006297 ORTHO05D007873 1.3e-31 141.4 408 32.6
Phvul.011G061900 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.7e-31 141.0 410 33.4
TPR.G23574 Trifolium pratense HOM05D006297 ORTHO05D007873 8.3e-31 138.7 315 36.8
arahy.Tifrunner.gnm1.ann1.NT76K4 Arachis hypogaea HOM05D006297 ORTHO05D007873 2.4e-30 137.1 363 33.9
Lalb_Chr03g0026471 Lupinus albus HOM05D006297 ORTHO05D007873 4.1e-30 136.3 396 33.1
BolC1t03251H Brassica oleracea HOM05D000026 ORTHO05D007873 5.4e-30 136.0 353 33.1
arahy.Tifrunner.gnm1.ann1.FG1CRE Arachis hypogaea HOM05D006297 ORTHO05D007873 3.5e-29 133.3 363 33.6
Dinv42987 Davidia involucrata HOM05D006297 ORTHO05D007873 7.8e-29 132.1 331 35.0
TPR.G6873 Trifolium pratense HOM05D006297 ORTHO05D007873 3.0e-28 130.2 342 37.1
Nn2g11187 Nelumbo nucifera HOM05D006297 ORTHO05D007873 1.1e-27 128.3 280 37.5
CiPaw.14G065800 Carya illinoinensis HOM05D006297 ORTHO05D007873 4.3e-27 126.3 292 36.3
FAN11G1892 Fragaria x ananassa HOM05D006297 ORTHO05D007873 7.3e-27 125.6 219 42.0
FAN16G1466 Fragaria x ananassa HOM05D006297 ORTHO05D007873 9.5e-27 125.2 219 42.5
ATR0559G346 Amborella trichopoda HOM05D006297 ORTHO05D007873 1.2e-26 124.8 244 39.8
FAN21G2693 Fragaria x ananassa HOM05D006297 ORTHO05D007873 1.2e-26 124.8 219 42.0
Medtr2g097710 Medicago truncatula HOM05D006297 ORTHO05D007873 1.2e-26 124.8 341 35.5
FAN25G2608 Fragaria x ananassa HOM05D006297 ORTHO05D007873 4.7e-26 122.9 219 41.6
arahy.Tifrunner.gnm1.ann1.19P32Y Arachis hypogaea HOM05D006297 ORTHO05D007873 8.1e-26 122.1 335 34.0
AUR62001745 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.4e-25 121.3 456 29.8
Ca_01304_v3 Cicer arietinum L. HOM05D006297 ORTHO05D007873 1.4e-25 121.3 317 34.4
PSO513G0159 Papaver somniferum HOM05D006297 ORTHO05D007873 1.4e-25 121.3 230 39.6
PSO339G0783 Papaver somniferum HOM05D006297 ORTHO05D007873 1.2e-24 118.2 233 36.1
AUR62020026 Chenopodium quinoa HOM05D006297 ORTHO05D007873 1.5e-24 117.9 372 33.3
Dinv17043 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-24 117.1 103 66.0
Dinv43111 Davidia involucrata HOM05D006297 ORTHO05D007873 2.6e-24 117.1 103 66.0
Lsat_1_v5_gn_8_72960 Lactuca sativa HOM05D006297 ORTHO05D007873 1.7e-23 114.4 341 32.3
Hma1.2p1_0757F.1_g213410 Hydrangea macrophylla HOM05D006297 ORTHO05D007873 3.2e-22 110.2 93 65.6
arahy.Tifrunner.gnm1.ann1.2MBI16 Arachis hypogaea HOM05D006297 ORTHO05D007873 4.1e-22 109.8 176 43.2
Psat5g118640 Pisum sativum HOM05D006297 ORTHO05D007873 1.6e-21 107.8 279 34.8
Dinv17042 Davidia involucrata HOM05D006297 ORTHO05D007873 3.5e-21 106.7 107 63.6
Dinv43112 Davidia involucrata HOM05D006297 ORTHO05D007873 3.5e-21 106.7 107 63.6
Lalb_Chr24g0397191 Lupinus albus HOM05D006297 ORTHO05D007873 1.3e-20 104.8 137 46.0
EL10Ac7g16061 Beta vulgaris HOM05D006297 ORTHO05D007873 2.3e-20 104.0 151 45.0
SalBow1G2607 Salvia bowleyana HOM05D006297 ORTHO05D007873 5.1e-20 102.8 140 47.9
MBI14_g08019_MAGBIO Magnolia biondii HOM05D006297 ORTHO05D007873 6.6e-20 102.4 238 36.6
Phvul.L008043 Phaseolus vulgaris HOM05D006297 ORTHO05D007873 1.9e-19 100.9 378 28.8
VMungo1080G0409 Vigna mungo HOM05D006297 ORTHO05D007873 2.5e-19 100.5 368 29.3
Ah.08g219890 Amaranthus hybridus HOM05D006297 ORTHO05D007873 2.4e-17 94.0 94 55.3
Hund04923 Selenicereus undatus HOM05D006297 ORTHO05D007873 4.0e-17 93.2 385 29.1
HanXRQChr05g0135261 Helianthus annuus HOM05D006297 ORTHO05D007873 4.9e-15 86.3 324 31.2
C01p33140 Brassica napus HOM05D006297 ORTHO05D007873 4.2e-14 83.2 246 32.1
BcaB02g10710 Brassica carinata HOM05D006297 ORTHO05D007873 1.7e-12 77.8 219 32.9
HPP92_015541 Vanilla planifolia HOM05D043147 ORTHO05D007873 1.7e-12 77.8 300 28.3
HanXRQChr11g0340671 Helianthus annuus HOM05D006297 ORTHO05D007873 3.0e-12 77.0 103 47.6
QL10p066115 Quercus lobata HOM05D006297 ORTHO05D017888 3.0e-12 77.0 198 33.3
QL10p061553 Quercus lobata HOM05D006297 ORTHO05D007873 3.3e-11 73.6 206 34.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 5.6e-11 72.8 165 33.9
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 2.4e-09 67.4 144 40.3
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 9.0e-09 65.5 123 38.2
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.2e-08 65.1 176 31.8
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.5e-08 64.7 198 31.3
CDE07G0208 Ceratophyllum demersum HOM05D006297 ORTHO05D007873 2.6e-08 63.9 155 34.2
HPP92_015481 Vanilla planifolia HOM05D043147 ORTHO05D007873 2.6e-08 63.9 144 31.2
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 4.5e-08 63.2 123 33.3
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 9.9e-08 62.0 155 32.9
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 9.9e-08 62.0 130 36.9
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 1.3e-07 61.6 109 37.6
Lsat_1_v5_gn_5_169521 Lactuca sativa HOM05D006297 ORTHO05D007873 1.7e-07 61.2 310 29.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-07 61.2 160 31.2
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 1.7e-07 61.2 108 36.1
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 1.7e-07 61.2 133 36.1
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.9e-07 60.5 130 37.7
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.8e-07 60.1 131 35.1
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-07 60.1 183 30.6
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 3.8e-07 60.1 164 32.9
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.9e-07 59.7 183 30.6
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.9e-07 59.7 141 34.8
Os10g0505900 Oryza sativa ssp. japonica HOM05D036983 ORTHO05D037006 6.4e-07 59.3 169 32.0
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 6.4e-07 59.3 147 32.7
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 8.4e-07 58.9 207 30.0
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 8.4e-07 58.9 207 30.0
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 8.4e-07 58.9 162 30.9
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.1e-06 58.5 118 33.9
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.4e-06 58.2 204 30.9
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.9e-06 57.8 190 31.6
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 2.4e-06 57.4 318 27.4
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 3.2e-06 57.0 110 36.4
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 3.2e-06 57.0 108 36.1
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 4.2e-06 56.6 110 36.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 4.2e-06 56.6 132 36.4
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 7.1e-06 55.8 106 36.8
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.1e-06 55.8 183 30.1


User provided reference genes

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