Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020873 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 3.6e-88 328.6 207 100.0
Actinidia19554 Actinidia chinensis HOM05D005729 ORTHO05D007026 3.2e-65 252.3 195 76.9
Dinv33283 Davidia involucrata HOM05D005729 ORTHO05D007026 3.2e-65 252.3 200 78.5
CSS0008758 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 2.7e-59 232.6 138 94.2
CSS0019060 Camellia sinensis var. sinensis HOM05D005729 ORTHO05D007026 8.5e-58 227.6 151 92.7
ClCG01G007820 Citrullus lanatus HOM05D005729 ORTHO05D007026 7.2e-57 224.6 195 69.7
Manes.04G092600 Manihot esculenta HOM05D005729 ORTHO05D007026 7.2e-57 224.6 207 61.4
Nn4g22156 Nelumbo nucifera HOM05D005729 ORTHO05D007026 2.6e-54 216.1 190 68.4
CANSAT64G2014 Cannabis sativa HOM05D005729 ORTHO05D007026 5.7e-54 214.9 195 66.2
Cpa.g.sc9.286 Carica papaya HOM05D005729 ORTHO05D007026 9.8e-54 214.2 196 65.3
Glyma.19G102200 Glycine max HOM05D005729 ORTHO05D007026 2.2e-53 213.0 195 65.1
MELO3C005111.2 Cucumis melo HOM05D005729 ORTHO05D007026 2.8e-53 212.6 195 66.2
Sed0006238 Sechium edule HOM05D005729 ORTHO05D007026 6.3e-53 211.5 195 67.7
Potri.014G145600 Populus trichocarpa HOM05D005729 ORTHO05D007026 2.4e-52 209.5 195 60.5
unitig_92.g28207 Utricularia gibba HOM05D005729 ORTHO05D007026 2.4e-52 209.5 195 65.6
Solyc02g094490.4 Solanum lycopersicum HOM05D005729 ORTHO05D007026 4.1e-52 208.8 194 64.4
CsaV3_5G024890 Cucumis sativus L. HOM05D005729 ORTHO05D007026 7.0e-52 208.0 195 65.1
Oeu003419.1 Olea europaea HOM05D005729 ORTHO05D007026 7.0e-52 208.0 197 65.5
Sed0018343 Sechium edule HOM05D005729 ORTHO05D007026 7.0e-52 208.0 190 67.9
SalBow7G1413 Salvia bowleyana HOM05D005729 ORTHO05D007026 1.2e-51 207.2 195 66.2
Duzib187G1006 Durio zibethinus HOM05D005729 ORTHO05D007026 1.6e-51 206.8 195 65.6
PGR142G3540 Punica granatum HOM05D005729 ORTHO05D007026 1.6e-51 206.8 195 61.0
FAN17G0918 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.0e-51 206.5 196 61.2
FAN22G1114 Fragaria x ananassa HOM05D005729 ORTHO05D007026 2.0e-51 206.5 196 61.2
Phvul.001G085400 Phaseolus vulgaris HOM05D005729 ORTHO05D007026 3.5e-51 205.7 195 62.6
CiPaw.03G002600 Carya illinoinensis HOM05D005729 ORTHO05D007026 5.9e-51 204.9 195 65.1
FAN12G1178 Fragaria x ananassa HOM05D005729 ORTHO05D007026 5.9e-51 204.9 196 60.7
Lalb_Chr22g0359961 Lupinus albus HOM05D005729 ORTHO05D007026 7.7e-51 204.5 195 64.1
FvH4_4g34010 Fragaria vesca HOM05D005729 ORTHO05D007026 1.0e-50 204.1 196 60.7
Dinv25620 Davidia involucrata HOM05D000884 ORTHO05D002127 1.7e-50 203.4 188 68.6
SGA_v2.0_scaffold47G17637 Striga asiatica HOM05D005729 ORTHO05D007026 1.7e-50 203.4 195 65.6
TAR371G0439 Trochodendron aralioides HOM05D005729 ORTHO05D007026 3.8e-50 202.2 196 64.3
THA.LOC104815860 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 6.5e-50 201.4 195 62.6
Aqoxy5G03273 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 1.5e-49 200.3 195 62.6
HanXRQChr14g0451391 Helianthus annuus HOM05D005729 ORTHO05D007026 3.3e-49 199.1 195 63.1
Lsat_1_v5_gn_2_94961 Lactuca sativa HOM05D005729 ORTHO05D007026 4.2e-49 198.7 195 64.1
Prupe.2G125900 Prunus persica HOM05D005729 ORTHO05D007026 4.2e-49 198.7 195 63.6
Glyma.16G049200 Glycine max HOM05D005729 ORTHO05D007026 5.5e-49 198.4 195 61.5
MD00G1041400 Malus domestica HOM05D005729 ORTHO05D007026 7.2e-49 198.0 194 62.9
FAN21G1155 Fragaria x ananassa HOM05D005729 ORTHO05D007026 9.5e-49 197.6 196 60.7
QL11p027744 Quercus lobata HOM05D005729 ORTHO05D007026 2.8e-48 196.1 195 62.6
MD05G1139400 Malus domestica HOM05D005729 ORTHO05D007026 3.6e-48 195.7 194 62.4
Thecc.04G047000 Theobroma cacao HOM05D005729 ORTHO05D007026 3.6e-48 195.7 195 62.1
arahy.Tifrunner.gnm1.ann1.33W0XH Arachis hypogaea HOM05D005729 ORTHO05D007026 4.7e-48 195.3 195 61.0
Thhalv10017252m.g Eutrema salsugineum HOM05D005729 ORTHO05D007026 4.7e-48 195.3 209 58.4
Eucgr.G01937 Eucalyptus grandis HOM05D005729 ORTHO05D007026 1.8e-47 193.4 200 60.0
TPR.G10334 Trifolium pratense HOM05D005729 ORTHO05D007026 2.3e-47 193.0 195 62.1
Medtr7g083930 Medicago truncatula HOM05D005729 ORTHO05D007026 3.0e-47 192.6 203 59.6
FAN25G1272 Fragaria x ananassa HOM05D005729 ORTHO05D007026 6.8e-47 191.4 196 60.7
Potri.002G237000 Populus trichocarpa HOM05D005729 ORTHO05D007026 6.8e-47 191.4 195 59.0
ATR0559G324 Amborella trichopoda HOM05D005729 ORTHO05D007026 1.5e-46 190.3 200 59.0
Aqoxy5G03167 Aquilegia oxysepala HOM05D005729 ORTHO05D007026 2.0e-46 189.9 195 61.0
THA.LOC104826200 Tarenaya hassleriana HOM05D005729 ORTHO05D007026 2.6e-46 189.5 192 61.5
DCAR_014472 Daucus carota HOM05D005729 ORTHO05D007026 7.5e-46 188.0 194 61.9
RcHm_v2.0_Chr5g0049531 Rosa chinensis HOM05D005729 ORTHO05D007026 9.8e-46 187.6 195 57.4
EL10Ac6g13393 Beta vulgaris HOM05D005729 ORTHO05D007026 1.3e-45 187.2 201 58.7
CARHR125040 Cardamine hirsuta HOM05D005729 ORTHO05D007026 1.3e-45 187.2 197 59.4
Gohir.D07G239700 Gossypium hirsutum HOM05D005729 ORTHO05D007026 1.7e-45 186.8 195 67.7
EL10As7g23751 Beta vulgaris HOM05D005729 ORTHO05D007026 8.3e-45 184.5 202 57.4
Zm00001eb183750 Zea mays HOM05D005729 ORTHO05D007026 8.3e-45 184.5 195 53.8
Aa31LG5G5560 Aethionema arabicum HOM05D005729 ORTHO05D007026 1.4e-44 183.7 195 58.5
Migut.K01484 Erythranthe guttata HOM05D005729 ORTHO05D007026 1.4e-44 183.7 195 61.5
Gorai.001G275800 Gossypium raimondii HOM05D005729 ORTHO05D007026 2.4e-44 183.0 195 68.2
CAN.G473.157 Capsicum annuum HOM05D005729 ORTHO05D007026 4.1e-44 182.2 194 59.8
Lj1g0015500 Lotus japonicus HOM05D005729 ORTHO05D007026 7.0e-44 181.4 195 60.0
Lju41C60T1 Lonicera japonica HOM05D005729 ORTHO05D007026 3.5e-43 179.1 198 64.1
Ah.02g128910 Amaranthus hybridus HOM05D005729 ORTHO05D007026 4.5e-43 178.7 201 57.7
Psat3g093680 Pisum sativum HOM05D005729 ORTHO05D007026 4.5e-43 178.7 199 57.3
Sp4g13900 Schrenkiella parvula HOM05D005729 ORTHO05D007026 7.8e-43 177.9 208 53.4
PGSC0003DMG400035897 Solanum tuberosum HOM05D005729 ORTHO05D007026 1.3e-42 177.2 195 58.5
BcaC02g07982 Brassica carinata HOM05D005729 ORTHO05D007026 5.0e-42 175.3 198 55.1
C04p61110 Brassica napus HOM05D005729 ORTHO05D007026 5.0e-42 175.3 198 55.1
BolC4t27596H Brassica oleracea HOM05D005729 ORTHO05D007026 5.0e-42 175.3 198 55.1
TAR629G2671 Trochodendron aralioides HOM05D005729 ORTHO05D007026 1.1e-41 174.1 195 56.9
Sopen02g039170 Solanum pennellii HOM05D005729 ORTHO05D007026 1.5e-41 173.7 194 60.8
MBI07_g07331_MAGBIO Magnolia biondii HOM05D005729 ORTHO05D007026 3.3e-41 172.6 195 56.9
ECA238G1999 Erigeron canadensis HOM05D005729 ORTHO05D007026 4.3e-41 172.2 195 56.9
Peaxi162Scf00420g00083 Petunia axillaris HOM05D005729 ORTHO05D007026 4.3e-41 172.2 195 59.0
TWI34G0826 Tripterygium wilfordii HOM05D005729 ORTHO05D007026 5.6e-41 171.8 196 56.6
Zm00001eb246070 Zea mays HOM05D005729 ORTHO05D007026 5.6e-41 171.8 195 50.3
A04p24280 Brassica napus HOM05D005729 ORTHO05D007026 9.5e-41 171.0 198 54.0
BraA04t17947Z Brassica rapa HOM05D005729 ORTHO05D007026 9.5e-41 171.0 198 54.0
Ciclev10016760m.g Citrus clementina HOM05D005729 ORTHO05D007026 1.6e-40 170.2 195 56.4
Gohir.A07G232500 Gossypium hirsutum HOM05D005729 ORTHO05D007026 2.1e-40 169.9 195 65.1
TAR628G1373 Trochodendron aralioides HOM05D005729 ORTHO05D007026 2.8e-40 169.5 195 56.4
Ca_08134_v3 Cicer arietinum L. HOM05D005729 ORTHO05D007026 6.1e-40 168.3 195 56.9
Duzib264G0852 Durio zibethinus HOM05D005729 ORTHO05D007026 1.8e-39 166.8 195 58.5
AL4G26660 Arabidopsis lyrata HOM05D005729 ORTHO05D007026 6.8e-39 164.9 197 53.8
Rhsim08G0039300 Rhododendron simsii HOM05D005729 ORTHO05D007026 2.6e-38 162.9 132 72.7
BcaB01g04046 Brassica carinata HOM05D005729 ORTHO05D007026 3.4e-38 162.5 200 52.0
HPP92_011631 Vanilla planifolia HOM05D005729 ORTHO05D007026 3.4e-38 162.5 196 55.1
Carub.0004s1273 Capsella rubella HOM05D005729 ORTHO05D007026 5.8e-38 161.8 197 53.8
AT2G31410 Arabidopsis thaliana HOM05D005729 ORTHO05D007026 9.8e-38 161.0 198 52.0
Cfa016824 Carpinus fangiana HOM05D005729 ORTHO05D007026 1.7e-37 160.2 195 55.4
A03p17590 Brassica napus HOM05D005729 ORTHO05D007026 2.2e-37 159.8 198 52.0
Sc07g0003710 Simmondsia chinensis HOM05D005729 ORTHO05D007026 2.2e-37 159.8 195 53.8
Nitab4.5_0002172g0090 Nicotiana tabacum HOM05D005729 ORTHO05D007026 3.7e-37 159.1 195 53.8
PSO478G2072 Papaver somniferum HOM05D005729 ORTHO05D007026 3.7e-37 159.1 195 49.2
C03p20700 Brassica napus HOM05D005729 ORTHO05D007026 8.3e-37 157.9 198 51.5
BolC3t14453H Brassica oleracea HOM05D005729 ORTHO05D007026 8.3e-37 157.9 198 51.5
BraA03t11026Z Brassica rapa HOM05D005729 ORTHO05D007026 8.3e-37 157.9 198 51.5
Os02g0595400 Oryza sativa ssp. japonica HOM05D005729 ORTHO05D007026 5.4e-36 155.2 195 58.5
Cfa007167 Carpinus fangiana HOM05D005729 ORTHO05D007026 7.0e-36 154.8 207 52.2
Haze_19869 Corylus avellana HOM05D005729 ORTHO05D007026 7.0e-36 154.8 195 54.4
RcHm_v2.0_Chr6g0252241 Rosa chinensis HOM05D005729 ORTHO05D007026 1.6e-35 153.7 175 52.0
AUR62036639 Chenopodium quinoa HOM05D005729 ORTHO05D007026 1.0e-34 151.0 199 51.3
Haze_14943 Corylus avellana HOM05D005729 ORTHO05D007026 3.0e-34 149.4 195 53.3
Atru.chr6.2652 Acer truncatum HOM05D005729 ORTHO05D007026 5.0e-34 148.7 195 52.3
Pp3c11_25830 Physcomitrium patens HOM05D005729 ORTHO05D007026 2.5e-33 146.4 194 47.9
RcHm_v2.0_Chr2g0115461 Rosa chinensis HOM05D005729 ORTHO05D007026 5.6e-33 145.2 175 49.7
RcHm_v2.0_Chr7g0240621 Rosa chinensis HOM05D005729 ORTHO05D007026 1.6e-32 143.7 178 50.6
Sabra02G0180500 Salix brachista HOM05D005729 ORTHO05D007026 1.1e-31 141.0 191 45.0
Cc07_g01230 Coffea canephora HOM05D005729 ORTHO05D007026 4.4e-30 135.6 216 49.5
PSO017G0758 Papaver somniferum HOM05D005729 ORTHO05D007026 7.5e-30 134.8 195 48.7
Nitab4.5_0000519g0260 Nicotiana tabacum HOM05D005729 ORTHO05D007026 9.8e-30 134.4 136 63.2
RcHm_v2.0_Chr5g0057561 Rosa chinensis HOM05D005729 ORTHO05D007026 1.2e-27 127.5 169 52.7
RcHm_v2.0_Chr2g0117931 Rosa chinensis HOM05D005729 ORTHO05D007026 1.3e-26 124.0 143 51.0
RcHm_v2.0_Chr6g0272931 Rosa chinensis HOM05D005729 ORTHO05D007026 2.3e-26 123.2 147 52.4
AUR62034632 Chenopodium quinoa HOM05D000604 ORTHO05D004512 6.6e-26 121.7 142 50.7
RcHm_v2.0_Chr5g0026441 Rosa chinensis HOM05D005729 ORTHO05D007026 1.9e-25 120.2 143 50.3
RcHm_v2.0_Chr1g0315821 Rosa chinensis HOM05D005729 ORTHO05D007026 2.8e-24 116.3 143 49.7
CDE06G2057 Ceratophyllum demersum HOM05D005729 ORTHO05D007026 8.1e-24 114.8 126 53.2
COL.COLO4_13365 Corchorus olitorius HOM05D005729 ORTHO05D007026 7.5e-22 108.2 108 52.8
RcHm_v2.0_Chr6g0295141 Rosa chinensis HOM05D005729 ORTHO05D007026 1.4e-20 104.0 109 60.6
Hma1.2p1_0033F.1_g021130 Hydrangea macrophylla HOM05D005729 ORTHO05D007026 4.6e-19 99.0 104 60.6
Mapoly0127s0012 Marchantia polymorpha HOM05D005729 ORTHO05D007026 1.7e-18 97.1 196 41.8
Haze_19868 Corylus avellana HOM05D005729 ORTHO05D007026 1.1e-17 94.4 105 50.5
Sc14g0008230 Simmondsia chinensis HOM05D005729 ORTHO05D007026 3.1e-15 86.3 120 45.0
Atru.chr5.655 Acer truncatum HOM05D000598 ORTHO05D000480 3.8e-13 79.3 108 56.5
Solyc03g083260.1 Solanum lycopersicum HOM05D005729 ORTHO05D007026 1.1e-12 77.8 96 47.9
Lalb_Chr14g0364061 Lupinus albus HOM05D005729 ORTHO05D007026 2.1e-11 73.6 59 83.1
Psat4g074600 Pisum sativum HOM05D005729 ORTHO05D007026 4.6e-11 72.4 105 44.8
CBR_g4589 Chara braunii HOM05D005729 ORTHO05D007026 1.3e-10 70.9 186 36.0
Psat4g074560 Pisum sativum HOM05D005729 ORTHO05D007026 1.7e-10 70.5 132 36.4
EL10Ac1g01380 Beta vulgaris HOM05D005729 ORTHO05D007026 3.9e-10 69.3 82 46.3
FvH4_3g27021 Fragaria vesca HOM05D005729 ORTHO05D007026 3.4e-06 56.2 64 50.0
Atru.chr6.2684 Acer truncatum HOM05D005729 ORTHO05D007026 9.9e-06 54.7 34 76.5


User provided reference genes

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