Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020868 Camellia sinensis var. sinensis HOM05D004911 ORTHO05D005930 0.0e+00 2246.9 1134 100.0
Actinidia04316 Actinidia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1706.0 1146 76.7
Dinv12051 Davidia involucrata HOM05D004911 ORTHO05D005930 0.0e+00 1688.3 1133 75.5
Rhsim09G0072200 Rhododendron simsii HOM05D004911 ORTHO05D005930 0.0e+00 1671.4 1174 74.1
vmacro16011 Vaccinium macrocarpon HOM05D004911 ORTHO05D005930 0.0e+00 1540.0 1146 71.9
GSVIVG01010210001 Vitis vinifera HOM05D004911 ORTHO05D005930 0.0e+00 1528.1 1136 69.5
Lj3C852G13 Lonicera japonica HOM05D004911 ORTHO05D005930 0.0e+00 1483.8 1137 68.3
Hma1.2p1_0183F.1_g081050 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 0.0e+00 1473.0 1090 71.3
Nn3g18681 Nelumbo nucifera HOM05D004911 ORTHO05D005930 0.0e+00 1459.1 1143 65.9
Prupe.2G211300 Prunus persica HOM05D004911 ORTHO05D005930 0.0e+00 1418.7 1147 64.8
CANSAT56G0121 Cannabis sativa HOM05D004911 ORTHO05D005930 0.0e+00 1407.1 1141 64.3
Cfa008718 Carpinus fangiana HOM05D004911 ORTHO05D005930 0.0e+00 1404.0 1146 64.6
TWI53G1120 Tripterygium wilfordii HOM05D004911 ORTHO05D005930 0.0e+00 1403.3 1139 64.2
Sabra08G0063200 Salix brachista HOM05D004911 ORTHO05D005930 0.0e+00 1398.6 1149 63.9
FAN03G1024 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1397.5 1134 64.5
RcHm_v2.0_Chr1g0362961 Rosa chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1397.1 1134 64.7
FAN10G0928 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1396.7 1134 64.5
Potri.008G085300 Populus trichocarpa HOM05D004911 ORTHO05D005930 0.0e+00 1396.7 1135 64.6
PSO782G1502 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1395.6 1149 63.2
PSO063G3537 Papaver somniferum HOM05D004911 ORTHO05D005930 0.0e+00 1395.2 1147 63.1
FAN10G1537 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1394.8 1134 64.3
Manes.03G080800 Manihot esculenta HOM05D004911 ORTHO05D005930 0.0e+00 1394.0 1132 63.5
Nitab4.5_0000562g0030 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1390.2 1139 63.0
MD07G1172300 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1388.2 1155 63.1
PGSC0003DMG400029831 Solanum tuberosum HOM05D004911 ORTHO05D005930 0.0e+00 1388.2 1139 62.6
Atru.chr11.1224 Acer truncatum HOM05D004911 ORTHO05D005930 0.0e+00 1387.9 1144 63.4
FvH4_7g19060 Fragaria vesca HOM05D004911 ORTHO05D005930 0.0e+00 1387.5 1134 64.3
FAN01G1211 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1385.9 1136 63.9
Solyc10g079850.2 Solanum lycopersicum HOM05D004911 ORTHO05D005930 0.0e+00 1382.5 1139 62.2
FAN06G1517 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1381.3 1134 64.0
Sopen10g030460 Solanum pennellii HOM05D004911 ORTHO05D005930 0.0e+00 1380.9 1139 62.2
FAN06G4750 Fragaria x ananassa HOM05D004911 ORTHO05D005930 0.0e+00 1379.8 1133 63.8
MD01G1105900 Malus domestica HOM05D004911 ORTHO05D005930 0.0e+00 1377.8 1155 62.4
Aqoxy3G04281 Aquilegia oxysepala HOM05D004911 ORTHO05D005930 0.0e+00 1372.8 1137 63.1
Nitab4.5_0000677g0060 Nicotiana tabacum HOM05D004911 ORTHO05D005930 0.0e+00 1372.8 1139 62.9
Peaxi162Scf01315g00114 Petunia axillaris HOM05D004911 ORTHO05D005930 0.0e+00 1368.6 1136 62.3
Ciclev10030563m.g Citrus clementina HOM05D004911 ORTHO05D005930 0.0e+00 1366.3 1125 62.9
MBI03_g33919_MAGBIO Magnolia biondii HOM05D004911 ORTHO05D005930 0.0e+00 1365.1 1133 62.9
Thecc.02G295700 Theobroma cacao HOM05D004911 ORTHO05D005930 0.0e+00 1358.2 1137 61.1
Duzib251G0593 Durio zibethinus HOM05D004911 ORTHO05D005930 0.0e+00 1350.9 1136 61.9
ECA246G1490 Erigeron canadensis HOM05D004911 ORTHO05D005930 0.0e+00 1328.9 1143 60.5
Lsat_1_v5_gn_0_9321 Lactuca sativa HOM05D004911 ORTHO05D005930 0.0e+00 1328.2 1142 60.9
ClCG01G007110 Citrullus lanatus HOM05D004911 ORTHO05D005930 0.0e+00 1326.6 1141 62.2
PGR044G1924 Punica granatum HOM05D004911 ORTHO05D005930 0.0e+00 1323.1 1129 61.0
DCAR_023433 Daucus carota HOM05D004911 ORTHO05D005930 0.0e+00 1322.0 1136 61.6
EL10Ac9g22915 Beta vulgaris HOM05D004911 ORTHO05D005930 0.0e+00 1315.1 1155 59.8
MELO3C005202.2 Cucumis melo HOM05D004911 ORTHO05D005930 0.0e+00 1314.3 1139 61.1
CsaV3_5G017560 Cucumis sativus L. HOM05D004911 ORTHO05D005930 0.0e+00 1310.0 1141 61.3
Gohir.A04G143200 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1308.1 1136 59.7
Cpa.g.sc63.15 Carica papaya HOM05D004911 ORTHO05D005930 0.0e+00 1307.0 1140 60.9
Gorai.012G182900 Gossypium raimondii HOM05D004911 ORTHO05D005930 0.0e+00 1304.7 1138 59.8
Gohir.D04G186500 Gossypium hirsutum HOM05D004911 ORTHO05D005930 0.0e+00 1304.3 1138 60.1
HanXRQChr06g0175521 Helianthus annuus HOM05D004911 ORTHO05D005930 0.0e+00 1297.3 1151 60.4
MSTRG.8077 Avicennia marina HOM05D004911 ORTHO05D005930 0.0e+00 1290.8 1135 59.4
Hund08529 Selenicereus undatus HOM05D004911 ORTHO05D005930 0.0e+00 1289.2 1150 59.6
SalBow2G3529 Salvia bowleyana HOM05D004911 ORTHO05D005930 0.0e+00 1287.3 1140 59.6
Sed0025480 Sechium edule HOM05D004911 ORTHO05D005930 0.0e+00 1276.5 1137 60.2
Cc07_g19490 Coffea canephora HOM05D004911 ORTHO05D005930 0.0e+00 1271.9 1146 58.6
Migut.H02310 Erythranthe guttata HOM05D004911 ORTHO05D005930 0.0e+00 1267.3 1151 58.6
Psat7g173880 Pisum sativum HOM05D004911 ORTHO05D005930 0.0e+00 1265.4 1134 59.3
Glyma.12G027900 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1260.7 1130 59.4
VMungo1215G1051 Vigna mungo HOM05D004911 ORTHO05D005930 0.0e+00 1260.0 1129 59.5
Lj3g0004396 Lotus japonicus HOM05D004911 ORTHO05D005930 0.0e+00 1256.1 1136 59.2
AUR62015197 Chenopodium quinoa HOM05D004911 ORTHO05D005930 0.0e+00 1254.2 1096 60.1
Sc06g0007820 Simmondsia chinensis HOM05D004911 ORTHO05D005930 0.0e+00 1254.2 1153 58.0
Glyma.11G102800 Glycine max HOM05D004911 ORTHO05D005930 0.0e+00 1248.4 1131 58.5
Ah.01g001680 Amaranthus hybridus HOM05D004911 ORTHO05D005930 0.0e+00 1248.0 1155 56.9
Medtr4g074460 Medicago truncatula HOM05D004911 ORTHO05D005930 0.0e+00 1238.8 1134 58.5
Ca_25607_v3 Cicer arietinum L. HOM05D004911 ORTHO05D005930 0.0e+00 1217.6 1137 58.3
COL.COLO4_16624 Corchorus olitorius HOM05D004911 ORTHO05D005930 0.0e+00 1217.2 1137 57.9
Lalb_Chr19g0139351 Lupinus albus HOM05D004911 ORTHO05D005930 0.0e+00 1215.3 1129 58.2
CAN.G1656.8 Capsicum annuum HOM05D004911 ORTHO05D005930 0.0e+00 1214.1 1031 61.4
arahy.Tifrunner.gnm1.ann1.Q7DFN3 Arachis hypogaea HOM05D004911 ORTHO05D005930 0.0e+00 1189.9 1023 60.4
Carub.0003s1976 Capsella rubella HOM05D004911 ORTHO05D005930 0.0e+00 1181.0 1148 54.1
CARHR095390 Cardamine hirsuta HOM05D004911 ORTHO05D005930 0.0e+00 1179.1 1144 53.7
AT3G19870 Arabidopsis thaliana HOM05D004911 ORTHO05D005930 0.0e+00 1175.2 1137 54.1
THA.LOC104809147 Tarenaya hassleriana HOM05D004911 ORTHO05D005930 0.0e+00 1168.3 1131 54.4
AL3G33410 Arabidopsis lyrata HOM05D004911 ORTHO05D005930 0.0e+00 1166.8 1140 53.5
SGA_v2.0_scaffold80G25956 Striga asiatica HOM05D004911 ORTHO05D005930 0.0e+00 1164.4 1113 56.2
unitig_22.g6363 Utricularia gibba HOM05D004911 ORTHO05D005930 0.0e+00 1164.1 1145 55.5
Thhalv10019942m.g Eutrema salsugineum HOM05D004911 ORTHO05D005930 0.0e+00 1156.4 1144 53.0
Sp3g17890 Schrenkiella parvula HOM05D004911 ORTHO05D005930 0.0e+00 1154.0 1144 52.9
ATR0564G294 Amborella trichopoda HOM05D004911 ORTHO05D005930 0.0e+00 1147.5 1175 53.4
A01p34870 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1142.1 1140 52.5
Aa31LG8G6640 Aethionema arabicum HOM05D004911 ORTHO05D005930 0.0e+00 1139.0 1135 52.7
BraA01t03570Z Brassica rapa HOM05D004911 ORTHO05D005930 0.0e+00 1137.9 1140 52.4
BolC1t04393H Brassica oleracea HOM05D004911 ORTHO05D005930 0.0e+00 1128.6 1139 52.1
C01p44300 Brassica napus HOM05D004911 ORTHO05D005930 0.0e+00 1125.2 1139 52.0
SHI04173 Sapria himalayana HOM05D004911 ORTHO05D005930 2.3e-298 1029.2 1168 49.5
BcaC09g48939 Brassica carinata HOM05D004911 ORTHO05D005930 1.7e-280 969.9 1133 47.7
TPR.G32325 Trifolium pratense HOM05D004911 ORTHO05D005930 1.8e-274 949.9 906 56.4
Hma1.2p1_0183F.1_g081060 Hydrangea macrophylla HOM05D004911 ORTHO05D005930 3.7e-272 942.2 647 73.9
Eucgr.J00848 Eucalyptus grandis HOM05D004911 ORTHO05D005930 1.0e-269 934.1 770 61.2
QL03p043438 Quercus lobata HOM05D004911 ORTHO05D005930 3.6e-267 925.6 640 71.7
CiPaw.05G166600 Carya illinoinensis HOM05D004911 ORTHO05D005930 3.0e-261 906.0 655 69.5
Os02g0829400 Oryza sativa ssp. japonica HOM05D004911 ORTHO05D005930 3.4e-257 892.5 1146 45.7
CDE05G0535 Ceratophyllum demersum HOM05D004911 ORTHO05D005930 4.6e-254 882.1 1134 44.7
Oeu056145.2 Olea europaea HOM05D004911 ORTHO05D005930 9.3e-231 804.7 644 62.7
Mapoly0023s0169 Marchantia polymorpha HOM05D004911 ORTHO05D005930 2.5e-228 796.6 1220 40.7
TAR371G0035 Trochodendron aralioides HOM05D004911 ORTHO05D005930 3.4e-225 786.2 563 70.3
AUR62017660 Chenopodium quinoa HOM05D004911 ORTHO05D005930 5.4e-223 778.9 648 63.0
SMO367G0101 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 2.4e-215 753.4 1160 40.2
Pp3c23_5970 Physcomitrium patens HOM05D004911 ORTHO05D005930 5.8e-209 732.3 1239 37.5
Haze_11729 Corylus avellana HOM05D004911 ORTHO05D005930 4.2e-207 726.1 612 62.9
Phvul.002G058701 Phaseolus vulgaris HOM05D004911 ORTHO05D005930 2.2e-195 687.2 561 63.8
Zm00001eb259390 Zea mays HOM05D004911 ORTHO05D005930 5.0e-184 649.4 644 53.3
HPP92_012853 Vanilla planifolia HOM05D004911 ORTHO05D005930 2.6e-177 627.1 713 49.4
TAR371G0490 Trochodendron aralioides HOM05D004911 ORTHO05D005930 4.8e-171 606.3 525 62.3
Haze_11728 Corylus avellana HOM05D004911 ORTHO05D005930 2.1e-166 590.9 466 67.0
CiPaw.05G166500 Carya illinoinensis HOM05D004911 ORTHO05D005930 4.1e-154 550.1 495 60.6
QL03p043434 Quercus lobata HOM05D004911 ORTHO05D005930 1.0e-144 518.8 488 57.4
CBR_g20270 Chara braunii HOM05D004911 ORTHO05D005930 1.6e-86 325.5 1598 24.3
AagrBONN_evm.TU.Sc2ySwM_228.3553 Anthoceros agrestis HOM05D004911 ORTHO05D005930 8.5e-83 313.2 521 37.8
HPP92_012844 Vanilla planifolia HOM05D004911 ORTHO05D005930 1.4e-82 312.4 741 35.8
HPP92_012845 Vanilla planifolia HOM05D004911 ORTHO05D005930 7.7e-76 290.0 288 53.5
SHI34912 Sapria himalayana HOM05D004911 ORTHO05D005930 4.2e-74 284.3 559 34.2
AagrBONN_evm.TU.Sc2ySwM_228.3554 Anthoceros agrestis HOM05D004911 ORTHO05D005930 2.0e-71 275.4 558 33.7
SHI38855 Sapria himalayana HOM05D004911 ORTHO05D005930 2.1e-65 255.4 379 44.1
SHI47273 Sapria himalayana HOM05D004911 ORTHO05D005930 1.4e-64 252.7 484 33.5
SHI42568 Sapria himalayana HOM05D004911 ORTHO05D005930 9.7e-63 246.5 560 31.8
SHI50333 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-51 209.5 514 31.5
SHI45395 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-49 202.6 676 27.7
SHI45716 Sapria himalayana HOM05D004911 ORTHO05D005930 1.6e-49 202.6 676 27.7
SHI39007 Sapria himalayana HOM05D004911 ORTHO05D005930 5.4e-45 187.6 375 36.0
SHI53748 Sapria himalayana HOM05D004911 ORTHO05D005930 3.5e-44 184.9 242 42.1
SHI39005 Sapria himalayana HOM05D004911 ORTHO05D005930 3.0e-40 171.8 168 51.2
SHI34911 Sapria himalayana HOM05D004911 ORTHO05D005930 4.4e-39 167.9 265 40.4
SHI49274 Sapria himalayana HOM05D004911 ORTHO05D005930 4.9e-38 164.5 294 37.4
SHI50603 Sapria himalayana HOM05D004911 ORTHO05D005930 5.2e-32 144.4 212 41.0
SHI39004 Sapria himalayana HOM05D004911 ORTHO05D005930 7.0e-29 134.0 150 48.0
SHI42567 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-28 133.3 148 48.0
SHI51106 Sapria himalayana HOM05D004911 ORTHO05D005930 1.2e-25 123.2 98 54.1
VMungo0251G2567 Vigna mungo HOM05D004911 ORTHO05D018492 8.0e-25 120.6 109 58.7
SHI38854 Sapria himalayana HOM05D004911 ORTHO05D005930 1.1e-24 120.2 120 50.0
SHI45052 Sapria himalayana HOM05D004911 ORTHO05D005930 3.2e-21 108.6 241 31.1
SEGI_29886 Sequoiadendron giganteum HOM05D004911 ORTHO05D005930 1.7e-19 102.8 145 44.8
Dinv29855 Davidia involucrata HOM05D004911 ORTHO05D005930 1.5e-18 99.8 53 84.9
ATR0624G005 Amborella trichopoda HOM05D004911 ORTHO05D005930 1.5e-15 89.7 115 47.8
SHI45396 Sapria himalayana HOM05D004911 ORTHO05D005930 5.8e-15 87.8 220 29.1
SHI45717 Sapria himalayana HOM05D004911 ORTHO05D005930 5.8e-15 87.8 220 29.1
EL10Ac2g03601 Beta vulgaris HOM05D004911 ORTHO05D005930 9.9e-15 87.0 58 67.2
SHI45051 Sapria himalayana HOM05D004911 ORTHO05D005930 6.4e-14 84.3 52 75.0
SHI52879 Sapria himalayana HOM05D004911 ORTHO05D005930 5.6e-10 71.2 151 35.1
Haze_13501 Corylus avellana HOM05D004911 ORTHO05D005930 2.8e-09 68.9 65 58.5
SMO343G0003 Selaginella moellendorffii HOM05D004911 ORTHO05D005930 4.4e-07 61.6 82 36.6
SHI47080 Sapria himalayana HOM05D004911 ORTHO05D005930 1.3e-06 60.1 80 37.5


User provided reference genes

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