Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020867 Camellia sinensis var. sinensis HOM05D007132 ORTHO05D009120 4.1e-217 757.7 362 100.0
vmacro00083 Vaccinium macrocarpon HOM05D007132 ORTHO05D009120 3.4e-163 578.6 362 77.9
Actinidia32785 Actinidia chinensis HOM05D007132 ORTHO05D009120 5.0e-162 574.7 359 77.4
CiPaw.11G075400 Carya illinoinensis HOM05D007132 ORTHO05D009120 2.0e-139 499.6 332 73.5
Cfa012869 Carpinus fangiana HOM05D007132 ORTHO05D009120 2.5e-137 492.7 338 71.9
Nn1g09371 Nelumbo nucifera HOM05D007132 ORTHO05D009120 4.7e-136 488.4 372 66.7
PGSC0003DMG400001970 Solanum tuberosum HOM05D007132 ORTHO05D009120 1.0e-135 487.3 372 64.8
Lj8A344T21 Lonicera japonica HOM05D007132 ORTHO05D009120 8.8e-135 484.2 418 59.3
Lj8C1T2 Lonicera japonica HOM05D007132 ORTHO05D009120 1.3e-133 480.3 400 60.8
MD05G1209900 Malus domestica HOM05D007132 ORTHO05D009120 1.7e-133 479.9 345 68.1
Nitab4.5_0004157g0010 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.2e-133 479.6 365 66.8
Oeu046789.1 Olea europaea HOM05D007132 ORTHO05D009120 3.7e-133 478.8 361 65.4
Sopen08g024160 Solanum pennellii HOM05D007132 ORTHO05D009120 4.9e-133 478.4 367 64.9
DCAR_028364 Daucus carota HOM05D007132 ORTHO05D009120 3.1e-132 475.7 330 70.3
Solyc08g075510.4 Solanum lycopersicum HOM05D007132 ORTHO05D009120 3.1e-132 475.7 367 64.6
Manes.S095221 Manihot esculenta HOM05D007132 ORTHO05D009120 1.2e-131 473.8 331 68.9
Atru.chr8.2638 Acer truncatum HOM05D007132 ORTHO05D009120 1.6e-131 473.4 346 66.5
Eucgr.E01138 Eucalyptus grandis HOM05D007132 ORTHO05D009120 2.7e-131 472.6 342 68.1
TWI75G0244 Tripterygium wilfordii HOM05D007132 ORTHO05D009120 2.9e-130 469.2 353 66.3
PGR042G0795 Punica granatum HOM05D007132 ORTHO05D009120 1.9e-129 466.5 327 69.1
SalBow8G0736 Salvia bowleyana HOM05D007132 ORTHO05D009120 4.3e-129 465.3 354 63.3
CAN.G1026.1 Capsicum annuum HOM05D007132 ORTHO05D009120 7.3e-129 464.5 355 63.4
MBI04_g06282_MAGBIO Magnolia biondii HOM05D007132 ORTHO05D009120 7.3e-129 464.5 323 70.3
CANSAT11G0857 Cannabis sativa HOM05D007132 ORTHO05D009120 1.6e-128 463.4 330 69.4
Lsat_1_v5_gn_6_15181 Lactuca sativa HOM05D007132 ORTHO05D009120 1.6e-128 463.4 334 67.7
HanXRQChr12g0382251 Helianthus annuus HOM05D007132 ORTHO05D009120 2.1e-128 463.0 345 64.9
Glyma.11G089600 Glycine max HOM05D007132 ORTHO05D009120 2.3e-127 459.5 329 68.7
Peaxi162Scf00053g00715 Petunia axillaris HOM05D007132 ORTHO05D009120 1.2e-126 457.2 364 61.5
Aqoxy3G02733 Aquilegia oxysepala HOM05D007132 ORTHO05D009120 1.5e-126 456.8 340 65.0
PSO541G5430 Papaver somniferum HOM05D007132 ORTHO05D009120 1.5e-126 456.8 337 67.7
EL10Ac2g04081 Beta vulgaris HOM05D007132 ORTHO05D009120 2.0e-126 456.4 323 68.7
Lj2g0003748 Lotus japonicus HOM05D007132 ORTHO05D009120 2.0e-126 456.4 335 68.1
Thecc.09G252800 Theobroma cacao HOM05D007132 ORTHO05D009120 2.6e-126 456.1 363 64.2
Psat2g145880 Pisum sativum HOM05D007132 ORTHO05D009120 3.4e-126 455.7 328 68.3
AUR62009339 Chenopodium quinoa HOM05D007132 ORTHO05D009120 7.5e-126 454.5 322 68.0
Duzib168G0014 Durio zibethinus HOM05D007132 ORTHO05D009120 7.5e-126 454.5 327 67.6
arahy.Tifrunner.gnm1.ann1.63YFX7 Arachis hypogaea HOM05D007132 ORTHO05D009120 9.8e-126 454.1 348 66.1
arahy.Tifrunner.gnm1.ann1.WE0KUF Arachis hypogaea HOM05D007132 ORTHO05D009120 9.8e-126 454.1 348 66.1
Ciclev10031829m.g Citrus clementina HOM05D007132 ORTHO05D009120 1.3e-125 453.8 373 61.7
Cc08_g05480 Coffea canephora HOM05D007132 ORTHO05D009120 1.7e-125 453.4 362 61.9
Potri.001G233200 Populus trichocarpa HOM05D007132 ORTHO05D009120 1.7e-125 453.4 363 63.9
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 2.2e-125 453.0 354 63.3
Gorai.006G123100 Gossypium raimondii HOM05D007132 ORTHO05D009120 3.7e-125 452.2 367 62.7
TPR.G5247 Trifolium pratense HOM05D007132 ORTHO05D009120 3.7e-125 452.2 326 67.5
Gohir.D09G105701 Gossypium hirsutum HOM05D007132 ORTHO05D009120 4.9e-125 451.8 367 62.4
BraA06t25207Z Brassica rapa HOM05D007132 ORTHO05D009120 1.1e-124 450.7 329 65.7
Sabra09G0016800 Salix brachista HOM05D007132 ORTHO05D009120 1.1e-124 450.7 328 67.4
VMungo1215G2638 Vigna mungo HOM05D007132 ORTHO05D009120 1.4e-124 450.3 325 67.1
Gohir.A09G109100 Gossypium hirsutum HOM05D007132 ORTHO05D009120 2.4e-124 449.5 367 62.1
Nitab4.5_0000030g0380 Nicotiana tabacum HOM05D007132 ORTHO05D009120 3.2e-124 449.1 340 66.5
MSTRG.1761 Avicennia marina HOM05D007132 ORTHO05D009120 4.1e-124 448.7 361 61.2
CDE02G3577 Ceratophyllum demersum HOM05D007132 ORTHO05D009120 4.1e-124 448.7 331 65.9
Potri.009G025400 Populus trichocarpa HOM05D007132 ORTHO05D009120 5.4e-124 448.4 328 66.8
Medtr5g025190 Medicago truncatula HOM05D007132 ORTHO05D009120 9.2e-124 447.6 332 66.6
FvH4_3g16420 Fragaria vesca HOM05D007132 ORTHO05D009120 2.0e-123 446.4 323 67.2
A06p21200 Brassica napus HOM05D007132 ORTHO05D009120 2.7e-123 446.0 332 64.5
COL.COLO4_33243 Corchorus olitorius HOM05D007132 ORTHO05D009120 1.7e-122 443.4 363 62.3
BolC3t19289H Brassica oleracea HOM05D007132 ORTHO05D009120 3.0e-122 442.6 332 63.9
RcHm_v2.0_Chr5g0027441 Rosa chinensis HOM05D007132 ORTHO05D009120 3.9e-122 442.2 332 66.6
C03p70370 Brassica napus HOM05D007132 ORTHO05D009120 9.5e-121 437.6 328 63.7
Sp2g03890 Schrenkiella parvula HOM05D007132 ORTHO05D009120 1.2e-120 437.2 362 60.8
Aa31LG9G15710 Aethionema arabicum HOM05D007132 ORTHO05D009120 2.1e-120 436.4 343 62.1
BcaB01g01051 Brassica carinata HOM05D007132 ORTHO05D009120 4.7e-120 435.3 332 64.2
QL12p004376 Quercus lobata HOM05D007132 ORTHO05D009120 4.7e-120 435.3 383 58.5
AUR62023023 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.3e-119 433.0 308 67.5
AUR62043353 Chenopodium quinoa HOM05D007132 ORTHO05D009120 2.3e-119 433.0 308 67.5
Thhalv10002595m.g Eutrema salsugineum HOM05D007132 ORTHO05D009120 2.3e-119 433.0 328 64.3
SGA_v2.0_scaffold111G31350 Striga asiatica HOM05D007132 ORTHO05D009120 2.3e-119 433.0 392 56.9
CARHR154210 Cardamine hirsuta HOM05D007132 ORTHO05D009120 1.5e-118 430.3 331 62.2
FAN11G4000 Fragaria x ananassa HOM05D007132 ORTHO05D009120 3.4e-118 429.1 329 65.0
FAN25G2365 Fragaria x ananassa HOM05D007132 ORTHO05D009120 4.4e-118 428.7 338 63.6
Sc01g0005800 Simmondsia chinensis HOM05D007132 ORTHO05D009120 6.4e-117 424.9 310 66.5
AL5G24560 Arabidopsis lyrata HOM05D007132 ORTHO05D009120 1.1e-116 424.1 326 63.5
Carub.0005s1173 Capsella rubella HOM05D007132 ORTHO05D009120 3.2e-116 422.5 331 61.9
AT3G45880 Arabidopsis thaliana HOM05D007132 ORTHO05D009120 1.2e-115 420.6 326 63.8
ATR0568G089 Amborella trichopoda HOM05D007132 ORTHO05D009120 1.6e-115 420.2 337 61.4
THA.LOC104798521 Tarenaya hassleriana HOM05D007132 ORTHO05D009120 6.8e-111 404.8 371 55.8
ECA233G5682 Erigeron canadensis HOM05D003740 ORTHO05D004611 1.7e-109 400.2 311 64.6
BcaC01g01945 Brassica carinata HOM05D007132 ORTHO05D009120 6.4e-109 398.3 308 62.0
Haze_08441 Corylus avellana HOM05D007132 ORTHO05D009120 8.3e-109 397.9 285 70.5
SEGI_38459 Sequoiadendron giganteum HOM05D007132 ORTHO05D009120 3.2e-108 396.0 326 58.3
Prupe.4G147600 Prunus persica HOM05D007132 ORTHO05D009120 5.6e-105 385.2 278 66.9
unitig_46.g18229 Utricularia gibba HOM05D007132 ORTHO05D009120 9.5e-105 384.4 350 55.7
Lalb_Chr05g0215041 Lupinus albus HOM05D007132 ORTHO05D009120 8.1e-104 381.3 287 65.5
Os09g0483600 Oryza sativa ssp. japonica HOM05D007132 ORTHO05D009120 1.5e-102 377.1 340 55.9
Hund11034 Selenicereus undatus HOM05D007132 ORTHO05D009120 4.4e-102 375.6 284 65.5
Pp3c2_13200 Physcomitrium patens HOM05D007132 ORTHO05D009120 1.4e-100 370.5 347 53.0
Phvul.002G120400 Phaseolus vulgaris HOM05D007132 ORTHO05D009120 6.0e-99 365.2 277 63.9
Zm00001eb316510 Zea mays HOM05D007132 ORTHO05D009120 5.1e-98 362.1 340 55.0
SMO367G0267 Selaginella moellendorffii HOM05D007132 ORTHO05D009120 1.1e-89 334.3 345 51.0
Nitab4.5_0000898g0130 Nicotiana tabacum HOM05D007132 ORTHO05D009120 2.0e-86 323.6 279 60.6
Ah.10g035250 Amaranthus hybridus HOM05D001758 ORTHO05D005969 2.9e-85 319.7 283 58.3
PSO675G1526 Papaver somniferum HOM05D007132 ORTHO05D009120 1.8e-82 310.5 260 60.4
MD10G1196200 Malus domestica HOM05D007132 ORTHO05D009120 8.4e-69 265.0 156 76.3
Cc02_g31510 Coffea canephora HOM05D007132 ORTHO05D009120 1.0e-66 258.1 145 77.2
TAR629G3340 Trochodendron aralioides HOM05D007132 ORTHO05D009120 3.9e-58 229.6 125 80.8
GSVIVG01036861001 Vitis vinifera HOM05D007132 ORTHO05D009120 4.8e-56 222.6 147 68.7
TAR629G3242 Trochodendron aralioides HOM05D007132 ORTHO05D009120 1.0e-53 214.9 191 61.3
Sp5g15660 Schrenkiella parvula HOM05D007132 ORTHO05D009120 2.7e-51 206.8 261 47.1
AagrBONN_evm.TU.Sc2ySwM_344.2529 Anthoceros agrestis HOM05D007132 ORTHO05D009120 4.8e-48 196.1 278 41.7
Migut.E01364 Erythranthe guttata HOM05D007132 ORTHO05D009120 1.5e-46 191.0 134 67.2
Rhsim11G0036100 Rhododendron simsii HOM05D007132 ORTHO05D009120 4.5e-46 189.5 109 82.6
MCO03G301 Micromonas commoda HOM05D007132 ORTHO05D009120 7.2e-44 182.2 335 37.6
Cfa022513 Carpinus fangiana HOM05D007132 ORTHO05D009120 2.8e-32 143.7 309 33.3
PRCOL_00004459 Prasinoderma coloniale HOM05D007132 ORTHO05D009120 8.8e-26 122.1 290 31.4
Cre03.g175750 Chlamydomonas reinhardtii HOM05D007132 ORTHO05D009120 4.8e-24 116.3 97 57.7
Rhsim11G0036200 Rhododendron simsii HOM05D007132 ORTHO05D009120 2.9e-21 107.1 72 72.2
Haze_08440 Corylus avellana HOM05D000433 ORTHO05D000443 4.4e-17 93.2 88 52.3
Nitab4.5_0000480g0030 Nicotiana tabacum HOM05D007132 ORTHO05D009120 7.5e-17 92.4 82 54.9
Lalb_Chr05g0215031 Lupinus albus HOM05D007132 ORTHO05D009120 3.1e-15 87.0 52 75.0
Psat2g145800 Pisum sativum HOM05D007132 ORTHO05D009120 1.6e-14 84.7 46 82.6
Medtr5g032230 Medicago truncatula HOM05D007132 ORTHO05D009120 5.9e-14 82.8 86 53.5
FAN13G1029 Fragaria x ananassa HOM05D007132 ORTHO05D009181 1.9e-12 77.8 91 47.3
FAN02G3822 Fragaria x ananassa HOM05D007132 ORTHO05D009120 1.6e-11 74.7 93 45.2
CDE11G0272 Ceratophyllum demersum HOM05D000435 ORTHO05D000430 7.5e-09 65.9 91 45.1
A03p09660 Brassica napus HOM05D004978 ORTHO05D005621 9.8e-09 65.5 145 30.3
BraA03t10282Z Brassica rapa HOM05D004978 ORTHO05D005621 9.8e-09 65.5 145 30.3
CSS0021936 Camellia sinensis var. sinensis HOM05D004419 ORTHO05D005480 8.3e-08 62.4 258 24.0
BcaB01g04842 Brassica carinata HOM05D004978 ORTHO05D005621 1.4e-07 61.6 209 26.3
Rhsim11G0036300 Rhododendron simsii HOM05D000007 ORTHO05D000039 2.4e-07 60.8 32 71.9
Pp3c5_1010 Physcomitrium patens HOM05D004419 ORTHO05D005480 4.1e-07 60.1 140 27.9
Carub.0003s2077 Capsella rubella HOM05D004419 ORTHO05D005480 9.2e-07 58.9 266 22.9
Sed0001509 Sechium edule HOM05D004419 ORTHO05D005480 1.6e-06 58.2 260 25.0
Eucgr.K03324 Eucalyptus grandis HOM05D004978 ORTHO05D005621 2.0e-06 57.8 142 29.6
Ciclev10015488m.g Citrus clementina HOM05D004419 ORTHO05D005480 3.5e-06 57.0 258 21.7
Pp3c17_10850 Physcomitrium patens HOM05D004419 ORTHO05D005480 3.5e-06 57.0 298 21.1
arahy.Tifrunner.gnm1.ann1.LD2WL8 Arachis hypogaea HOM05D004419 ORTHO05D005480 4.6e-06 56.6 259 22.4


User provided reference genes

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