Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 7.1e-240 833.6 431 100.0
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 8.1e-103 378.3 337 63.8
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 8.7e-97 358.2 313 61.0
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 3.3e-88 329.7 375 51.7
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 9.0e-86 321.6 313 56.5
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 1.7e-84 317.4 315 56.5
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 2.9e-84 316.6 432 46.3
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.8e-81 307.4 318 56.0
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 5.1e-81 305.8 344 52.9
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 1.1e-80 304.7 343 53.6
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 3.3e-80 303.1 323 54.2
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 1.1e-78 298.1 316 54.4
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 1.4e-78 297.7 314 53.2
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 5.3e-78 295.8 335 52.5
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 5.5e-75 285.8 313 52.7
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 3.6e-74 283.1 333 50.5
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 4.7e-74 282.7 314 52.2
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.4e-73 281.2 313 52.1
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 3.0e-73 280.0 314 51.0
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 2.6e-72 276.9 313 49.2
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 4.4e-72 276.2 317 52.1
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 5.7e-72 275.8 315 50.5
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.8e-70 270.8 314 50.0
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.4e-70 270.4 314 50.3
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.4e-70 270.4 348 48.0
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 7.0e-70 268.9 322 49.1
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 1.5e-69 267.7 315 50.8
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.7e-68 264.2 298 50.7
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.9e-67 260.8 315 48.3
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 2.5e-67 260.4 313 49.5
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 9.4e-67 258.5 319 48.6
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.0e-65 255.0 314 47.8
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 6.7e-65 252.3 316 50.0
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.1e-64 251.5 291 48.5
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 1.5e-64 251.1 321 48.6
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 3.3e-64 250.0 321 44.5
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.3e-64 250.0 321 44.5
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.3e-64 250.0 321 45.2
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 3.3e-64 250.0 316 46.2
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 5.7e-64 249.2 316 46.8
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 9.7e-64 248.4 292 49.7
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 1.3e-63 248.1 315 47.9
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 2.4e-62 243.8 317 47.3
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 5.3e-62 242.7 315 48.3
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 1.2e-61 241.5 319 47.3
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 7.7e-61 238.8 316 49.4
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.3e-60 238.0 334 44.0
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 1.3e-60 238.0 314 43.3
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.7e-60 237.7 313 46.0
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 2.2e-60 237.3 319 46.1
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 2.9e-60 236.9 339 44.8
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 5.0e-60 236.1 316 44.9
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 1.1e-59 235.0 317 44.2
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.9e-59 234.2 325 43.1
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.9e-59 234.2 316 45.9
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 3.2e-59 233.4 313 44.4
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.2e-58 231.5 319 46.1
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.2e-58 231.5 316 44.3
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 2.1e-58 230.7 331 43.2
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 6.1e-58 229.2 316 42.1
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 6.1e-58 229.2 321 45.2
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 8.0e-58 228.8 315 46.7
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 8.0e-58 228.8 321 42.4
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 8.0e-58 228.8 312 44.6
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 1.4e-57 228.0 312 44.2
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.3e-57 227.3 313 44.4
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 3.0e-57 226.9 314 43.9
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 5.2e-57 226.1 295 46.4
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 1.2e-56 224.9 316 44.3
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.5e-56 224.6 313 43.8
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 2.0e-56 224.2 322 44.7
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.0e-56 224.2 315 43.5
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 3.4e-56 223.4 313 45.7
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 4.4e-56 223.0 354 40.4
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 5.7e-56 222.6 315 46.0
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 5.7e-56 222.6 316 45.9
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 1.7e-55 221.1 315 42.9
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.2e-55 220.7 316 45.3
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 8.3e-55 218.8 326 41.7
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.4e-54 217.2 314 44.9
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 4.1e-54 216.5 345 42.6
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 7.0e-54 215.7 320 44.1
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.6e-53 214.5 360 42.2
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 6.5e-52 209.1 318 41.2
Nitab4.5_0000753g0110 Nicotiana tabacum HOM05D001447 ORTHO05D005923 1.5e-51 208.0 315 41.6
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 4.2e-51 206.5 313 39.9
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.2e-50 204.9 341 42.2
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 4.7e-50 203.0 327 40.1
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 2.3e-49 200.7 313 42.2
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.5e-48 198.0 229 50.7
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 3.4e-48 196.8 314 40.8
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 2.4e-46 190.7 324 43.2
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.1e-46 190.3 297 41.1
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 5.4e-46 189.5 313 41.5
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.6e-45 188.0 313 39.3
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 2.7e-45 187.2 313 39.6
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 3.5e-45 186.8 323 39.3
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 7.7e-45 185.7 319 39.2
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.3e-44 184.9 312 40.1
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.3e-44 184.9 312 40.1
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 5.0e-44 183.0 312 39.7
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 8.6e-44 182.2 316 39.6
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.1e-43 181.8 390 35.4
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-43 181.8 224 49.6
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 2.5e-43 180.6 333 37.8
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 3.6e-42 176.8 312 38.8
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 1.2e-40 171.8 304 38.2
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 3.7e-39 166.8 312 40.1
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 3.7e-39 166.8 221 43.0
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 1.1e-38 165.2 325 37.2
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 2.4e-38 164.1 335 36.1
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 9.2e-38 162.2 316 38.9
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 3.5e-37 160.2 220 45.5
TAR623G1702 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.1e-35 155.2 225 45.3
Ca_07826_v3 Cicer arietinum L. HOM05D001447 ORTHO05D005923 1.8e-33 147.9 241 42.7
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 8.9e-33 145.6 222 44.6
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 1.4e-30 138.3 320 35.0
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 7.0e-30 136.0 328 34.5
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 6.0e-29 132.9 234 40.2
HanXRQChr04g0117031 Helianthus annuus HOM05D001447 ORTHO05D005923 3.0e-28 130.6 255 35.7
SEGI_06958 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 2.1e-26 124.4 370 28.9
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 3.7e-23 113.6 90 63.3
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 5.4e-22 109.8 209 38.8
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 3.9e-20 103.6 100 54.0
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 3.9e-20 103.6 106 51.9
VMungo1383G3216 Vigna mungo HOM05D001447 ORTHO05D010195 1.1e-19 102.1 112 50.0
QL01p018054 Quercus lobata HOM05D001447 ORTHO05D005923 3.3e-19 100.5 72 66.7
Aa31LG7G13510 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.1e-18 97.8 115 49.6
SEGI_16617 Sequoiadendron giganteum HOM05D001447 ORTHO05D005923 6.2e-18 96.3 343 25.1
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.1e-17 95.5 88 53.4
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.8e-17 94.7 271 28.4
VMungo1383G1695 Vigna mungo HOM05D001447 ORTHO05D005923 3.1e-17 94.0 101 47.5
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.9e-15 87.4 89 49.4
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 1.9e-14 84.7 251 31.1
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 9.2e-14 82.4 237 32.1
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.9e-11 74.7 56 69.6
RcHm_v2.0_Chr1g0370741 Rosa chinensis HOM05D023747 ORTHO05D025522 9.6e-11 72.4 73 50.7
Zm00001eb128570 Zea mays HOM05D001447 ORTHO05D005923 1.2e-10 72.0 331 25.4
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-10 71.6 95 44.2
FvH4_7g24870 Fragaria vesca HOM05D021264 ORTHO05D022594 3.6e-10 70.5 81 45.7
CSS0032728 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D004880 1.4e-09 68.6 111 47.7
FAN01G2287 Fragaria x ananassa HOM05D021264 ORTHO05D022594 2.4e-09 67.8 88 43.2
HanXRQChr02g0059211 Helianthus annuus HOM05D001447 ORTHO05D005923 8.9e-09 65.9 97 41.2
FAN03G0395 Fragaria x ananassa HOM05D021264 ORTHO05D022594 3.4e-08 63.9 98 39.8
Mapoly0019s0119 Marchantia polymorpha HOM05D001447 ORTHO05D005923 4.4e-08 63.5 418 23.2
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 5.8e-08 63.2 60 48.3
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 7.6e-08 62.8 95 41.1
MBI18_g14746_MAGBIO Magnolia biondii HOM05D039545 ORTHO05D005923 3.8e-07 60.5 41 65.9
MBI02_g40903_MAGBIO Magnolia biondii HOM05D039545 ORTHO05D036546 2.4e-06 57.8 46 58.7
SMO200G0114 Selaginella moellendorffii HOM05D004617 ORTHO05D005531 3.2e-06 57.4 97 35.1
MBI08_g18170_MAGBIO Magnolia biondii HOM05D039545 ORTHO05D005923 9.3e-06 55.8 41 63.4


User provided reference genes

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