Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 0.0e+00 1404.8 757 100.0
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 0.0e+00 1397.5 757 98.8
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 3.3e-293 1011.5 800 71.2
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 7.4e-285 983.8 799 70.0
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.0e-270 935.3 844 65.8
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 6.3e-268 927.5 844 65.3
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 2.0e-253 879.4 784 62.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 5.7e-253 877.9 802 64.7
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 2.2e-252 875.9 814 60.1
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.2e-252 875.9 777 63.8
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 3.7e-252 875.2 760 65.1
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 1.8e-251 872.8 778 62.5
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 2.0e-250 869.4 779 64.3
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.0e-249 867.1 780 62.1
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 6.6e-249 864.4 778 62.6
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.2e-247 860.1 777 64.4
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.4e-243 846.7 779 60.7
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 2.3e-241 839.3 838 57.8
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 4.3e-240 835.1 768 61.2
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 7.3e-240 834.3 780 61.9
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 9.5e-240 833.9 822 58.4
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.6e-239 832.0 778 62.0
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 4.7e-239 831.6 782 62.7
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 1.2e-237 827.0 779 60.1
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 7.5e-237 824.3 790 59.9
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 3.7e-236 822.0 813 57.7
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 8.3e-236 820.8 837 58.1
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 1.1e-235 820.5 821 57.5
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.2e-235 818.9 804 59.0
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 4.1e-235 818.5 825 57.7
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.1e-235 817.8 779 58.7
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.6e-234 816.6 795 58.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 1.6e-234 816.6 776 60.3
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.7e-233 813.1 745 61.1
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 3.0e-233 812.4 778 59.8
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.9e-233 812.0 799 58.7
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 3.9e-233 812.0 777 58.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 3.9e-233 812.0 789 60.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.6e-233 811.2 777 58.0
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.3e-232 808.5 777 59.8
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 7.3e-232 807.7 829 58.1
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 2.1e-231 806.2 784 59.2
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 2.8e-231 805.8 744 60.9
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.7e-231 805.1 815 57.8
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.7e-231 805.1 744 61.2
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 1.2e-229 800.4 815 57.5
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.6e-229 799.3 825 56.8
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 1.1e-224 783.9 785 58.0
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 1.9e-224 783.1 803 59.4
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 3.3e-224 782.3 798 56.9
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.5e-221 773.5 795 56.0
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 7.6e-221 771.2 765 57.5
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 9.9e-221 770.8 774 56.3
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.1e-219 767.3 762 57.5
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.1e-219 767.3 782 57.2
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.6e-218 763.5 776 55.7
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 3.9e-217 758.8 823 55.4
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 4.3e-216 755.4 767 58.0
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 9.6e-216 754.2 779 55.2
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.3e-215 753.8 810 54.4
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 1.3e-215 753.8 766 56.8
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 1.6e-215 753.4 790 55.8
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 3.6e-215 752.3 779 57.1
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.8e-214 750.0 771 54.6
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 1.8e-214 750.0 765 55.9
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 4.0e-214 748.8 794 56.8
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.4e-211 740.3 732 56.6
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.0e-209 732.6 663 60.2
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 5.6e-208 728.4 800 52.8
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 9.6e-208 727.6 763 55.6
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.1e-206 724.2 738 56.4
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 5.8e-205 718.4 778 53.9
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 6.4e-204 714.9 768 53.9
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 6.4e-204 714.9 735 56.3
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 1.9e-203 713.4 773 53.3
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 5.5e-203 711.8 775 54.3
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 1.2e-202 710.7 775 54.1
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 7.9e-202 708.0 761 53.5
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 7.9e-202 708.0 775 55.6
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.5e-200 703.7 770 52.3
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.3e-199 700.7 762 53.8
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.6e-199 700.3 774 52.7
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 1.1e-198 697.6 730 55.3
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 5.3e-198 695.3 773 51.7
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.5e-197 693.7 763 53.5
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 2.2e-196 689.9 803 52.6
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.9e-196 689.5 868 49.9
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 6.5e-196 688.3 762 52.8
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.1e-195 687.6 747 53.7
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.2e-195 686.0 734 54.2
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 4.2e-195 685.6 769 53.6
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 5.5e-195 685.3 770 53.1
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 7.1e-195 684.9 762 52.4
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 3.5e-194 682.6 765 53.3
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 3.0e-193 679.5 761 52.6
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.9e-192 676.8 616 59.4
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 7.4e-192 674.9 686 54.4
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 9.7e-192 674.5 762 52.0
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.6e-191 673.7 717 57.3
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 4.8e-191 672.2 766 52.0
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 5.3e-190 668.7 764 52.4
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 9.0e-190 667.9 771 52.9
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 4.5e-189 665.6 765 52.4
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 7.6e-189 664.8 763 51.6
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 2.2e-188 663.3 600 59.0
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 2.1e-186 656.8 741 54.8
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.0e-185 654.4 762 51.7
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.6e-176 623.2 628 53.8
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 4.1e-174 615.9 439 71.3
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.0e-169 601.3 728 50.4
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 2.3e-169 600.1 741 52.0
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 1.7e-167 594.0 769 48.4
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.2e-167 593.6 665 52.2
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 4.2e-163 579.3 883 43.5
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 1.5e-160 570.9 855 44.6
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 3.3e-160 569.7 873 42.6
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 1.6e-149 534.3 765 45.4
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 1.1e-147 528.1 441 61.2
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 1.3e-143 514.6 775 43.5
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 2.7e-133 480.3 464 56.2
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 6.6e-116 422.5 753 39.2
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 9.9e-104 382.1 469 46.1
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 8.4e-103 379.0 309 64.7
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.5e-101 373.6 777 37.2
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.3e-89 333.2 482 41.7
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.5e-88 331.6 480 41.2
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.9e-87 327.4 488 40.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.2e-85 322.0 389 57.3
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-85 321.6 480 41.2
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.5e-83 314.3 469 41.8
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 3.4e-80 303.9 540 43.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.9e-79 300.1 436 39.9
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 8.4e-79 299.3 469 39.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.2e-78 297.4 485 37.5
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.2e-78 297.4 485 37.5
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.1e-73 280.8 483 36.4
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 6.9e-73 279.6 383 49.9
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.7e-61 241.1 632 34.3
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 2.0e-56 224.9 197 54.8
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.6e-45 187.6 204 55.9
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.9e-39 167.9 408 38.5
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 6.8e-28 130.2 92 63.0
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 1.8e-20 105.5 71 71.8
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.5e-19 102.4 359 34.3
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 6.0e-16 90.5 81 55.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.3e-14 83.6 209 32.5
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.8e-12 77.0 53 60.4
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.1e-09 69.7 74 47.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-09 69.7 74 47.3
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.4e-09 69.3 53 54.7
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 2.4e-09 68.6 49 69.4
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 4.1e-09 67.8 77 49.4
unitig_61.g26414 Utricularia gibba HOM05D000584 ORTHO05D000458 5.4e-09 67.4 151 32.5
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.1e-09 67.0 85 43.5
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 5.1e-07 60.8 45 64.4
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 7.3e-06 57.0 65 49.2


User provided reference genes

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