Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 6.0e-25 117.1 68 100.0
CSS0041171 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.1e-22 108.6 68 94.1
CSS0041767 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.1e-18 96.3 68 83.8
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.5e-18 94.0 67 85.1
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.9e-17 90.1 67 82.1
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 1.1e-13 79.7 67 80.6
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 4.1e-13 77.8 67 79.1
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 4.1e-13 77.8 67 79.1
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 4.1e-13 77.8 67 79.1
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 4.5e-12 74.3 67 68.7
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.0e-11 73.2 67 55.2
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.0e-11 73.2 67 70.1
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 1.7e-11 72.4 68 69.1
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 6.5e-11 70.5 67 70.1
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 1.2e-09 66.2 78 60.3
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 1.6e-09 65.9 68 63.2
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 1.6e-09 65.9 67 70.1
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 2.7e-09 65.1 67 68.7
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 4.6e-09 64.3 67 67.2
AL6G11600 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 6.1e-09 63.9 73 61.6
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 6.1e-09 63.9 73 61.6
Manes.08G079000 Manihot esculenta HOM05D002160 ORTHO05D002012 7.9e-09 63.5 76 64.5
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 1.4e-08 62.8 69 63.8
AT5G02380 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.0e-08 61.6 73 60.3
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 3.0e-08 61.6 74 62.2
Rhsim13G0082700 Rhododendron simsii HOM05D002160 ORTHO05D002012 3.9e-08 61.2 68 64.7
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.1e-08 60.8 75 52.0
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 5.1e-08 60.8 66 63.6
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 6.7e-08 60.5 75 65.3
CAN.G405.1 Capsicum annuum HOM05D002160 ORTHO05D002012 6.7e-08 60.5 74 62.2
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 6.7e-08 60.5 67 65.7
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 8.8e-08 60.1 68 69.1
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 1.1e-07 59.7 75 62.7
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.1e-07 59.7 73 57.5
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.1e-07 59.7 75 60.0
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 2.0e-07 58.9 74 58.1
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 2.6e-07 58.5 68 61.8
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 3.3e-07 58.2 77 58.4
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 3.3e-07 58.2 75 62.7
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 3.3e-07 58.2 75 62.7
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.3e-07 58.2 75 61.3
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.3e-07 58.2 75 61.3
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 3.3e-07 58.2 60 75.0
CSS0046936 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 4.4e-07 57.8 58 77.6
CSS0049920 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 4.4e-07 57.8 58 77.6
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 5.7e-07 57.4 76 56.6
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 5.7e-07 57.4 75 64.0
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.7e-07 57.4 70 48.6
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.7e-07 57.4 75 58.7
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.7e-07 57.4 75 61.3
CSS0041307 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 7.4e-07 57.0 58 75.9
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 7.4e-07 57.0 70 65.7
Thecc.05G039800 Theobroma cacao HOM05D002160 ORTHO05D002012 7.4e-07 57.0 71 64.8
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 1.3e-06 56.2 77 57.1
Rhsim04G0157100 Rhododendron simsii HOM05D002160 ORTHO05D002012 1.3e-06 56.2 70 60.0
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 61 67.2
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.7e-06 55.8 76 61.8
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 2.2e-06 55.5 76 60.5
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 2.2e-06 55.5 77 45.5
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 2.2e-06 55.5 77 45.5
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 2.2e-06 55.5 77 45.5
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 2.2e-06 55.5 77 45.5
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 2.2e-06 55.5 77 45.5
Cfa017382 Carpinus fangiana HOM05D002160 ORTHO05D002012 2.2e-06 55.5 75 60.0
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 77 45.5
HanXRQChr08g0235781 Helianthus annuus HOM05D002160 ORTHO05D002012 2.2e-06 55.5 67 64.2
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 89 51.7
Solyc04g058150.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 2.2e-06 55.5 57 70.2
Sopen04g026050 Solanum pennellii HOM05D002160 ORTHO05D002012 2.2e-06 55.5 57 70.2
Haze_20789 Corylus avellana HOM05D002160 ORTHO05D002012 2.8e-06 55.1 75 60.0
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 2.8e-06 55.1 76 57.9
Os05g0111300 Oryza sativa ssp. japonica HOM05D024798 ORTHO05D002012 2.8e-06 55.1 67 61.2
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 2.8e-06 55.1 61 63.9
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 3.7e-06 54.7 76 55.3
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 3.7e-06 54.7 77 44.2
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 3.7e-06 54.7 77 44.2
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 3.7e-06 54.7 76 55.3
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 3.7e-06 54.7 61 67.2
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 4.8e-06 54.3 77 44.2
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 4.8e-06 54.3 77 44.2
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 4.8e-06 54.3 76 59.2
PSO151G0128 Papaver somniferum HOM05D002160 ORTHO05D002012 6.3e-06 53.9 64 67.2
PSO339G1859 Papaver somniferum HOM05D002160 ORTHO05D002012 6.3e-06 53.9 64 70.3
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 6.3e-06 53.9 70 47.1
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 6.3e-06 53.9 61 68.9
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 8.2e-06 53.5 76 52.6
Sopen04g025910 Solanum pennellii HOM05D002160 ORTHO05D002012 8.2e-06 53.5 69 56.5


User provided reference genes

Program Settings