Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.6e-180 634.4 313 100.0
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.6e-180 634.4 313 100.0
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 2.5e-154 548.9 310 86.8
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 6.2e-153 544.3 331 84.0
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 1.7e-150 536.2 309 86.1
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 2.9e-150 535.4 310 84.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 3.8e-150 535.0 310 85.2
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 8.4e-150 533.9 310 84.8
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 1.4e-149 533.1 309 84.5
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 2.4e-149 532.3 312 83.3
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 2.7e-148 528.9 311 83.3
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.0e-147 526.9 312 82.1
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 2.3e-147 525.8 312 81.7
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 8.7e-147 523.9 312 82.7
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 8.7e-147 523.9 310 82.6
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 1.1e-146 523.5 310 82.3
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.9e-146 522.7 313 82.7
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 3.3e-146 521.9 312 82.7
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 4.3e-146 521.5 312 83.0
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 5.6e-146 521.2 310 81.6
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 9.6e-146 520.4 312 81.7
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.3e-145 520.0 313 81.8
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 2.1e-145 519.2 310 81.0
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 4.8e-145 518.1 310 81.9
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.4e-144 516.5 310 81.3
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.4e-144 516.5 312 80.8
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 1.4e-144 516.5 312 83.0
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 6.9e-144 514.2 312 82.1
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 9.0e-144 513.8 316 79.4
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 9.0e-144 513.8 312 82.1
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.5e-143 513.1 313 80.5
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.6e-143 512.3 312 82.4
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 7.6e-143 510.8 312 82.4
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 1.3e-142 510.0 312 81.1
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.7e-142 509.6 314 79.9
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 2.2e-142 509.2 312 81.7
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 2.9e-142 508.8 311 81.7
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.9e-142 508.8 312 82.1
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 2.9e-142 508.8 312 79.5
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 4.9e-142 508.1 312 80.8
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.5e-142 507.7 306 81.4
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 6.5e-142 507.7 312 80.4
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 1.1e-141 506.9 313 80.2
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 1.4e-141 506.5 311 81.4
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.4e-141 506.5 312 81.7
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.4e-141 506.5 312 79.8
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.9e-141 506.1 311 80.7
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 3.2e-141 505.4 310 81.6
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 4.2e-141 505.0 312 81.4
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 5.5e-141 504.6 312 80.8
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 9.3e-141 503.8 313 79.6
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.2e-140 503.4 313 80.8
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.6e-140 503.1 309 81.2
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 2.1e-140 502.7 312 78.5
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 2.1e-140 502.7 312 79.2
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 3.5e-140 501.9 309 79.3
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 3.5e-140 501.9 312 78.2
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 1.0e-139 500.4 312 79.5
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.8e-139 499.6 307 81.1
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 3.0e-139 498.8 312 81.4
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 5.1e-139 498.0 312 79.5
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 8.7e-139 497.3 314 79.3
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 8.7e-139 497.3 318 77.7
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 1.1e-138 496.9 312 79.8
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 5.7e-138 494.6 312 77.6
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 2.2e-137 492.7 310 78.4
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.1e-136 490.3 310 78.1
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 3.1e-136 488.8 313 79.2
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 9.0e-136 487.3 309 79.3
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.5e-135 486.5 310 77.4
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.4e-135 485.3 313 77.0
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 4.5e-135 485.0 282 83.3
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 4.5e-135 485.0 309 78.6
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 4.5e-135 485.0 313 78.9
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 1.0e-134 483.8 309 76.4
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 1.0e-134 483.8 315 77.8
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.7e-134 483.0 310 77.4
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 3.8e-134 481.9 315 77.8
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 6.5e-134 481.1 315 78.4
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 1.1e-133 480.3 311 76.8
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 2.5e-133 479.2 315 74.9
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 3.2e-133 478.8 315 79.0
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 5.5e-133 478.0 322 74.5
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 1.2e-132 476.9 333 72.7
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.7e-132 475.7 319 74.6
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.8e-131 473.0 330 71.5
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 3.9e-131 471.9 321 74.1
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 5.1e-131 471.5 319 74.3
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 5.7e-130 468.0 299 76.6
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 9.7e-130 467.2 321 73.5
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 9.7e-130 467.2 282 80.5
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 1.4e-128 463.4 321 72.3
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 1.4e-128 463.4 319 72.7
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 4.1e-128 461.8 321 72.9
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.3e-128 461.5 291 77.7
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 9.1e-128 460.7 319 73.4
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 1.2e-127 460.3 313 74.4
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 1.2e-127 460.3 257 86.4
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 1.7e-126 456.4 328 71.0
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 2.7e-124 449.1 310 72.3
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.6e-124 448.7 263 81.7
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 4.7e-124 448.4 310 71.6
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 6.1e-124 448.0 314 71.7
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.1e-122 443.7 320 70.6
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 8.2e-121 437.6 312 72.8
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 1.5e-119 433.3 321 66.7
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 2.0e-119 433.0 263 79.5
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.7e-118 429.9 306 71.2
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 8.0e-116 421.0 307 70.4
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 8.0e-116 421.0 325 65.5
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 5.7e-114 414.8 324 65.1
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 1.3e-113 413.7 313 67.4
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 3.5e-111 405.6 312 69.2
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 1.1e-109 400.6 222 86.5
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 4.0e-107 392.1 229 79.9
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 4.1e-104 382.1 232 79.7
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 2.2e-102 376.3 332 59.0
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 6.1e-100 368.2 322 59.0
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.3e-97 360.5 337 54.0
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.1e-96 357.5 310 61.9
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 1.8e-96 356.7 304 63.2
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-92 344.0 226 76.1
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-92 342.4 204 82.8
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 2.7e-87 326.2 316 57.0
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 8.0e-84 314.7 274 57.7
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 2.2e-81 306.6 165 90.3
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 3.7e-81 305.8 211 72.5
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 7.3e-77 291.6 313 50.8
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.8e-75 287.0 238 60.5
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 2.6e-74 283.1 158 86.7
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-68 262.7 171 79.5
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 4.4e-66 255.8 150 82.0
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 4.9e-65 252.3 348 43.1
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.5e-63 246.1 134 88.1
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.6e-60 237.3 171 70.8
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 2.0e-58 230.3 165 69.1
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.1e-54 215.7 121 85.1
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.5e-53 213.4 121 83.5
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-53 213.0 121 83.5
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.3e-53 213.0 121 83.5
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.6e-53 212.2 112 91.1
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-52 211.1 121 82.6
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.8e-52 209.9 118 84.7
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.6e-52 209.5 116 86.2
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 4.7e-52 209.1 132 78.8
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 6.2e-52 208.8 289 42.2
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.2e-52 208.8 118 84.7
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.1e-51 206.5 118 83.1
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 6.9e-51 205.3 118 82.2
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.4e-50 203.0 296 44.3
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.1e-46 189.1 156 62.8
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 3.3e-45 186.4 241 48.5
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 1.1e-43 181.4 102 83.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 1.8e-43 180.6 102 83.3
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.4e-41 171.8 93 89.2
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.4e-35 153.7 84 84.5
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.3e-33 147.9 135 59.3
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 1.9e-32 144.1 94 73.4
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 1.0e-25 121.7 95 61.1
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 1.0e-25 121.7 95 61.1
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-22 111.3 64 85.9
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.0e-22 110.2 64 85.9
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-21 108.2 93 62.4
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 5.7e-21 105.9 106 54.7
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-20 104.8 93 61.3
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 3.7e-20 103.2 93 61.3
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 4.8e-20 102.8 74 74.3
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.8e-19 100.9 230 31.7
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 1.5e-18 97.8 80 61.2
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 4.5e-18 96.3 63 69.8
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.7e-17 94.4 50 88.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.7e-17 94.4 50 88.0
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.0e-17 92.8 50 86.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 5.0e-17 92.8 50 86.0
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 6.5e-17 92.4 81 61.7
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 1.1e-16 91.7 47 87.2
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 3.8e-09 66.6 124 37.9
Medtr2g014570 Medicago truncatula HOM05D003958 ORTHO05D004864 1.8e-06 57.8 67 53.7
QL05p086362 Quercus lobata HOM05D003958 ORTHO05D044828 5.1e-06 56.2 83 38.6


User provided reference genes

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