Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020784 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.2e-239 832.8 429 100.0
CSS0036880 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 1.6e-207 726.1 424 92.0
Rhsim10G0001700 Rhododendron simsii HOM05D005312 ORTHO05D006459 7.4e-165 584.3 425 76.7
Actinidia37728 Actinidia chinensis HOM05D005312 ORTHO05D006459 1.3e-164 583.6 425 75.5
vmacro22240 Vaccinium macrocarpon HOM05D005312 ORTHO05D006459 1.3e-164 583.6 427 77.5
Dinv33289 Davidia involucrata HOM05D005312 ORTHO05D006459 2.8e-164 582.4 423 74.9
Hma1.2p1_0868F.1_g230570 Hydrangea macrophylla HOM05D005312 ORTHO05D006459 1.7e-153 546.6 424 70.5
Oeu039797.1 Olea europaea HOM05D005312 ORTHO05D006459 3.6e-151 538.9 408 72.5
Cc07_g01210 Coffea canephora HOM05D005312 ORTHO05D006459 1.2e-149 533.9 434 70.3
Peaxi162Scf00420g00087 Petunia axillaris HOM05D005312 ORTHO05D006459 5.4e-147 525.0 425 67.3
PGSC0003DMG400020194 Solanum tuberosum HOM05D005312 ORTHO05D006459 1.7e-145 520.0 426 66.9
Solyc02g094480.4 Solanum lycopersicum HOM05D000001 ORTHO05D000003 5.0e-145 518.5 422 66.1
Sopen02g039150 Solanum pennellii HOM05D005312 ORTHO05D006459 5.0e-145 518.5 422 66.4
CAN.G473.156 Capsicum annuum HOM05D005312 ORTHO05D006459 1.2e-143 513.8 430 67.9
Nitab4.5_0025697g0010 Nicotiana tabacum HOM05D005312 ORTHO05D006459 3.0e-142 509.2 360 73.6
Ciclev10015374m.g Citrus clementina HOM05D005312 ORTHO05D006459 9.8e-141 504.2 426 66.0
SalBow4G2016 Salvia bowleyana HOM05D005312 ORTHO05D006459 1.1e-139 500.7 366 70.2
COL.COLO4_13349 Corchorus olitorius HOM05D005312 ORTHO05D006459 1.4e-139 500.4 390 66.9
Thecc.04G046000 Theobroma cacao HOM05D005312 ORTHO05D006459 1.8e-139 500.0 390 66.2
Prupe.3G312600 Prunus persica HOM05D005312 ORTHO05D006459 3.1e-139 499.2 429 66.7
TAR371G0255 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.1e-139 499.2 370 72.4
QL02p069878 Quercus lobata HOM05D005312 ORTHO05D006459 4.1e-139 498.8 389 68.9
Duzib264G0870 Durio zibethinus HOM05D005312 ORTHO05D006459 9.2e-139 497.7 428 65.2
MSTRG.3045 Avicennia marina HOM05D005312 ORTHO05D006459 2.7e-138 496.1 410 69.8
CiPaw.03G003000 Carya illinoinensis HOM05D005312 ORTHO05D006459 4.5e-138 495.4 404 66.8
TAR629G1483 Trochodendron aralioides HOM05D005312 ORTHO05D006459 3.9e-137 492.3 368 71.2
Atru.chr6.2642 Acer truncatum HOM05D005312 ORTHO05D006459 1.9e-136 490.0 424 64.4
Cpa.g.sc70.78 Carica papaya HOM05D005312 ORTHO05D006459 5.6e-136 488.4 429 65.7
DCAR_002973 Daucus carota HOM05D005312 ORTHO05D006459 9.5e-136 487.6 445 63.6
Duzib147G0684 Durio zibethinus HOM05D005312 ORTHO05D006459 9.5e-136 487.6 414 66.2
Duzib187G0698 Durio zibethinus HOM05D005312 ORTHO05D006459 1.2e-135 487.3 427 63.5
Cfa007172 Carpinus fangiana HOM05D005312 ORTHO05D006459 8.0e-135 484.6 425 63.5
RcHm_v2.0_Chr2g0176401 Rosa chinensis HOM05D005312 ORTHO05D006459 6.8e-134 481.5 432 66.0
FvH4_6g54210 Fragaria vesca HOM05D005312 ORTHO05D006459 8.9e-134 481.1 384 66.9
FAN09G1737 Fragaria x ananassa HOM05D005312 ORTHO05D006459 8.9e-134 481.1 384 66.9
Migut.F00017 Erythranthe guttata HOM05D005312 ORTHO05D006459 1.5e-133 480.3 407 67.8
MD17G1007700 Malus domestica HOM05D005312 ORTHO05D006459 2.6e-133 479.6 385 65.7
FAN14G0182 Fragaria x ananassa HOM05D005312 ORTHO05D006459 4.4e-133 478.8 384 66.7
MD09G1004000 Malus domestica HOM05D005312 ORTHO05D006459 5.8e-133 478.4 385 65.7
FAN05G1132 Fragaria x ananassa HOM05D005312 ORTHO05D006459 7.5e-133 478.0 384 66.1
FAN02G3987 Fragaria x ananassa HOM05D005312 ORTHO05D006459 2.9e-132 476.1 384 66.1
Ah.02g128920 Amaranthus hybridus HOM05D005312 ORTHO05D006459 4.9e-132 475.3 432 62.3
Glyma.02G066000 Glycine max HOM05D005312 ORTHO05D006459 3.2e-131 472.6 409 67.2
Glyma.16G146900 Glycine max HOM05D005312 ORTHO05D006459 3.2e-131 472.6 409 63.8
Nn4g22171 Nelumbo nucifera HOM05D005312 ORTHO05D006459 4.1e-131 472.2 369 67.2
Oeu003422.1 Olea europaea HOM05D005312 ORTHO05D006459 4.1e-131 472.2 402 66.2
ClCG05G012720 Citrullus lanatus HOM05D005312 ORTHO05D006459 5.4e-131 471.9 401 67.3
Lj7A616T62 Lonicera japonica HOM05D005312 ORTHO05D006459 7.0e-131 471.5 374 70.1
Nitab4.5_0002172g0150 Nicotiana tabacum HOM05D005312 ORTHO05D006459 1.2e-130 470.7 394 65.7
Sed0007531 Sechium edule HOM05D005312 ORTHO05D006459 1.3e-129 467.2 365 68.5
Gorai.001G275400 Gossypium raimondii HOM05D005312 ORTHO05D006459 1.7e-129 466.8 429 62.9
Phvul.004G070300 Phaseolus vulgaris HOM05D005312 ORTHO05D006459 3.9e-129 465.7 408 65.7
Gohir.A07G232100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.0e-129 465.3 429 62.9
Eucgr.G01940 Eucalyptus grandis HOM05D005312 ORTHO05D006459 2.5e-128 463.0 427 62.1
Gohir.D07G239300 Gossypium hirsutum HOM05D005312 ORTHO05D006459 4.3e-128 462.2 429 62.5
Aa31LG2G5770 Aethionema arabicum HOM05D005312 ORTHO05D006459 9.5e-128 461.1 387 62.3
CANSAT64G1152 Cannabis sativa HOM05D005312 ORTHO05D006459 1.2e-127 460.7 371 66.0
TWI32G0425 Tripterygium wilfordii HOM05D005312 ORTHO05D006459 1.1e-126 457.6 394 64.0
SGA_v2.0_scaffold44G16946 Striga asiatica HOM05D005312 ORTHO05D006459 2.3e-126 456.4 400 67.0
Psat1g097480 Pisum sativum HOM05D005312 ORTHO05D006459 3.1e-126 456.1 404 64.6
TPR.G36663 Trifolium pratense HOM05D005312 ORTHO05D006459 4.0e-126 455.7 412 64.6
MELO3C014806.2 Cucumis melo HOM05D005312 ORTHO05D006459 8.9e-126 454.5 365 66.3
Lj2g0017210 Lotus japonicus HOM05D005312 ORTHO05D006459 1.5e-125 453.8 404 64.6
Lalb_Chr02g0156821 Lupinus albus HOM05D005312 ORTHO05D006459 2.0e-125 453.4 405 63.5
Sabra14G0109800 Salix brachista HOM05D005312 ORTHO05D006459 2.6e-125 453.0 399 64.7
Manes.04G092300 Manihot esculenta HOM05D005312 ORTHO05D006459 2.9e-124 449.5 402 64.9
Potri.014G145900 Populus trichocarpa HOM05D005312 ORTHO05D006459 1.4e-123 447.2 369 65.0
THA.LOC104805304 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 1.9e-123 446.8 413 64.2
EL10As7g23753 Beta vulgaris HOM05D005312 ORTHO05D006459 2.4e-123 446.4 394 61.4
Aqoxy5G03173 Aquilegia oxysepala HOM05D005312 ORTHO05D006459 1.6e-122 443.7 410 64.6
Manes.11G077500 Manihot esculenta HOM05D005312 ORTHO05D006459 1.6e-122 443.7 418 62.4
THA.LOC104823996 Tarenaya hassleriana HOM05D005312 ORTHO05D006459 3.5e-122 442.6 430 62.1
Sp2g15910 Schrenkiella parvula HOM05D005312 ORTHO05D006459 6.0e-122 441.8 375 64.8
Sc03g0004830 Simmondsia chinensis HOM05D005312 ORTHO05D006459 6.6e-121 438.3 401 66.8
Carub.0005s0483 Capsella rubella HOM05D005312 ORTHO05D006459 8.6e-121 438.0 373 63.3
Lalb_Chr06g0173771 Lupinus albus HOM05D005312 ORTHO05D006459 8.6e-121 438.0 404 61.6
Thhalv10004350m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 1.1e-120 437.6 413 63.7
Sabra02G0180200 Salix brachista HOM05D005312 ORTHO05D006459 3.3e-120 436.0 415 61.9
Medtr6g033275 Medicago truncatula HOM05D005312 ORTHO05D006459 5.6e-120 435.3 369 63.7
AT3G26780 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 1.2e-119 434.1 369 62.6
PSO017G1316 Papaver somniferum HOM05D005312 ORTHO05D006459 2.1e-119 433.3 413 62.7
arahy.Tifrunner.gnm1.ann1.ZY683S Arachis hypogaea HOM05D005312 ORTHO05D006459 2.8e-119 433.0 390 60.5
Potri.002G236600 Populus trichocarpa HOM05D005312 ORTHO05D006459 4.7e-119 432.2 373 61.7
BraA02t08484Z Brassica rapa HOM05D005312 ORTHO05D006459 1.1e-118 431.0 409 62.6
A02p34780 Brassica napus HOM05D005312 ORTHO05D006459 1.8e-118 430.3 409 63.1
PSO478G3188 Papaver somniferum HOM05D005312 ORTHO05D006459 6.8e-118 428.3 414 62.8
AL5G15650 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 8.9e-118 427.9 411 61.3
AUR62041074 Chenopodium quinoa HOM05D005312 ORTHO05D006459 2.0e-117 426.8 390 59.5
C02p53340 Brassica napus HOM05D005312 ORTHO05D006459 2.6e-117 426.4 376 62.2
BcaC03g17388 Brassica carinata HOM05D005312 ORTHO05D006459 3.4e-117 426.0 376 62.2
BolC2t11405H Brassica oleracea HOM05D005312 ORTHO05D006459 3.4e-117 426.0 376 62.2
Aa31LG1G1910 Aethionema arabicum HOM05D005312 ORTHO05D006459 5.8e-117 425.2 385 59.7
BcaB07g30210 Brassica carinata HOM05D005312 ORTHO05D006459 2.2e-116 423.3 388 62.1
arahy.Tifrunner.gnm1.ann1.JN3C7K Arachis hypogaea HOM05D005312 ORTHO05D006459 2.9e-116 422.9 393 60.1
MBI07_g40342_MAGBIO Magnolia biondii HOM05D005312 ORTHO05D006459 2.9e-116 422.9 350 65.7
PGR083G1093 Punica granatum HOM05D005312 ORTHO05D006459 2.9e-116 422.9 372 63.4
AL1G24500 Arabidopsis lyrata HOM05D005312 ORTHO05D006459 1.9e-115 420.2 411 62.5
HanXRQChr14g0451381 Helianthus annuus HOM05D005312 ORTHO05D006459 2.1e-114 416.8 362 61.3
AT1G12850 Arabidopsis thaliana HOM05D005312 ORTHO05D006459 7.8e-114 414.8 415 60.0
CARHR013180 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.1e-111 406.8 407 59.7
Carub.0001s1260 Capsella rubella HOM05D005312 ORTHO05D006459 2.8e-111 406.4 408 57.8
BcaB03g13161 Brassica carinata HOM05D005312 ORTHO05D006459 6.2e-111 405.2 408 60.8
Lsat_1_v5_gn_2_94460 Lactuca sativa HOM05D005312 ORTHO05D006459 1.4e-110 404.1 392 60.7
BolC8t49199H Brassica oleracea HOM05D005312 ORTHO05D006459 1.8e-110 403.7 415 60.5
Sp1g11430 Schrenkiella parvula HOM05D005312 ORTHO05D006459 4.0e-110 402.5 407 59.0
CARHR147850 Cardamine hirsuta HOM05D005312 ORTHO05D006459 6.8e-110 401.7 411 59.1
A08p32570 Brassica napus HOM05D005312 ORTHO05D006459 2.6e-109 399.8 407 59.2
Thhalv10007881m.g Eutrema salsugineum HOM05D005312 ORTHO05D006459 3.4e-109 399.4 416 59.4
C08p15720 Brassica napus HOM05D005312 ORTHO05D006459 4.4e-109 399.1 415 60.0
BraA08t35181Z Brassica rapa HOM05D005312 ORTHO05D006459 1.1e-107 394.4 407 58.7
Gohir.D10G081000 Gossypium hirsutum HOM05D005312 ORTHO05D006459 5.6e-104 382.1 381 54.1
Gorai.011G088100 Gossypium raimondii HOM05D005312 ORTHO05D006459 3.6e-103 379.4 381 53.5
CDE02G3855 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 4.0e-102 375.9 345 60.0
Gohir.A10G070100 Gossypium hirsutum HOM05D005312 ORTHO05D006459 9.0e-102 374.8 380 53.4
CDE06G1073 Ceratophyllum demersum HOM05D005312 ORTHO05D006459 8.4e-100 368.2 345 58.6
ATR0582G189 Amborella trichopoda HOM05D005312 ORTHO05D006459 1.2e-98 364.4 442 51.6
AUR62037835 Chenopodium quinoa HOM05D005312 ORTHO05D006459 7.8e-98 361.7 292 63.7
GSVIVG01033003001 Vitis vinifera HOM05D005312 ORTHO05D006459 1.7e-97 360.5 290 65.9
SEGI_01379 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 1.2e-93 347.8 369 51.8
ECA238G3491 Erigeron canadensis HOM05D000001 ORTHO05D000003 3.2e-91 339.7 287 62.4
Zm00001eb170350 Zea mays HOM05D005312 ORTHO05D006459 7.1e-91 338.6 356 55.1
Os11g0522000 Oryza sativa ssp. japonica HOM05D005312 ORTHO05D006459 3.5e-90 336.3 357 52.9
CSS0007293 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D006459 4.3e-88 329.3 191 97.9
Ca_26608_v3 Cicer arietinum L. HOM05D005312 ORTHO05D006459 7.6e-85 318.5 420 46.9
Actinidia19557 Actinidia chinensis HOM05D005312 ORTHO05D006459 5.3e-70 269.2 157 84.7
ECA246G2144 Erigeron canadensis HOM05D005312 ORTHO05D006459 2.2e-68 263.8 235 58.3
SEGI_20575 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 3.8e-68 263.1 292 48.6
HPP92_008243 Vanilla planifolia HOM05D005312 ORTHO05D006459 2.4e-62 243.8 225 60.0
VMungo0464G0174 Vigna mungo HOM05D005312 ORTHO05D006459 2.4e-62 243.8 214 62.1
Pp3c21_20660 Physcomitrium patens HOM05D005312 ORTHO05D006459 3.9e-57 226.5 362 38.1
VMungo0464G1790 Vigna mungo HOM05D005312 ORTHO05D006459 1.7e-55 221.1 192 70.8
unitig_37.g12040 Utricularia gibba HOM05D005312 ORTHO05D006459 1.2e-53 214.9 194 61.9
unitig_37.g12041 Utricularia gibba HOM05D005312 ORTHO05D006459 5.9e-53 212.6 207 54.6
Haze_14938 Corylus avellana HOM05D005312 ORTHO05D006459 3.8e-52 209.9 190 70.0
Nn3g16305 Nelumbo nucifera HOM05D005312 ORTHO05D006459 7.4e-48 195.7 178 57.9
CBR_g2835 Chara braunii HOM05D005312 ORTHO05D006459 1.8e-38 164.5 352 32.4
AagrBONN_evm.TU.Sc2ySwM_344.1953 Anthoceros agrestis HOM05D005312 ORTHO05D006459 1.0e-33 148.7 271 35.4
SGA_v2.0_scaffold173G39196 Striga asiatica HOM05D005312 ORTHO05D006459 9.8e-24 115.5 111 60.4
CSS0035997 Camellia sinensis var. sinensis HOM05D005312 ORTHO05D109635 5.0e-20 103.2 49 89.8
SEGI_29311 Sequoiadendron giganteum HOM05D005312 ORTHO05D006459 4.7e-18 96.7 79 59.5
CARHR120940 Cardamine hirsuta HOM05D005312 ORTHO05D006459 2.3e-12 77.8 69 58.0
Actinidia19558 Actinidia chinensis HOM05D005312 ORTHO05D006459 9.5e-11 72.4 72 61.1
Pp3c8_13210 Physcomitrium patens HOM05D003180 ORTHO05D003664 9.2e-06 55.8 137 34.3


User provided reference genes

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