Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 9.1e-140 500.4 277 100.0
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 5.6e-129 464.5 277 92.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.4e-127 459.9 277 91.7
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 3.0e-127 458.8 277 92.1
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 8.9e-127 457.2 277 91.3
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.9e-127 457.2 277 91.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 8.9e-127 457.2 277 91.0
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.5e-126 456.4 277 91.3
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.0e-126 456.1 277 91.3
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 3.4e-126 455.3 277 90.3
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 90.6
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 91.3
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 91.3
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 4.4e-126 454.9 277 91.3
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 89.9
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 91.0
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 5.7e-126 454.5 277 91.7
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 89.5
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 7.5e-126 454.1 277 90.6
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 9.8e-126 453.8 277 91.0
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-125 453.4 277 91.0
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 1.3e-125 453.4 277 90.6
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.7e-125 453.0 277 89.9
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 2.2e-125 452.6 277 89.9
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 90.6
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.9e-125 452.2 277 90.6
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 89.9
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 89.2
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.4e-125 451.1 277 90.6
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 88.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 90.6
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.4e-124 449.9 277 89.5
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 89.9
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 89.9
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.8e-124 449.5 276 90.2
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 89.2
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 5.4e-124 448.0 277 88.4
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 9.2e-124 447.2 277 88.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.6e-123 446.4 277 89.9
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.0e-123 446.0 277 89.2
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.7e-123 445.7 277 88.1
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 4.6e-123 444.9 277 88.4
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 5.9e-123 444.5 277 89.2
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 88.8
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 89.2
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 88.4
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 3.0e-122 442.2 276 88.0
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 3.0e-122 442.2 277 88.4
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 87.7
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 5.0e-122 441.4 277 88.8
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 3.3e-121 438.7 283 86.9
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 87.7
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 88.4
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 7.3e-121 437.6 277 87.4
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 87.0
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 88.4
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 4.7e-120 434.9 278 86.7
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 6.2e-120 434.5 277 86.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 6.2e-120 434.5 301 82.4
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 2.3e-119 432.6 277 85.2
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 8.9e-119 430.6 261 90.8
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 84.1
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 84.1
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.6e-118 429.1 274 84.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.4e-118 428.7 321 76.9
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 84.1
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.8e-118 427.9 320 76.9
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 7.5e-118 427.6 277 87.4
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 9.8e-118 427.2 274 84.3
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.3e-117 426.8 277 83.4
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 2.2e-117 426.0 277 82.3
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 85.9
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.4e-116 422.5 261 89.3
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.4e-116 422.5 261 89.3
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.2e-115 420.2 277 85.6
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.0e-114 417.2 275 83.6
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.0e-114 414.8 275 83.3
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 6.6e-114 414.5 280 83.9
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.6e-114 414.5 318 74.5
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.1e-113 413.7 275 82.9
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.1e-113 413.7 275 82.9
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.1e-113 413.7 299 76.3
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 1.9e-113 412.9 278 82.7
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.3e-113 411.8 318 72.0
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.8e-112 409.1 277 82.7
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.6e-112 408.7 274 84.3
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 1.1e-111 407.1 255 89.8
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 1.1e-111 407.1 278 80.6
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.8e-111 406.4 270 85.2
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 7.5e-110 401.0 273 80.6
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.3e-109 400.2 277 80.5
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.2e-109 399.4 278 79.9
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 2.9e-109 399.1 278 80.6
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 8.3e-109 397.5 264 84.1
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 1.4e-108 396.7 256 87.1
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 5.4e-108 394.8 256 84.4
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 2.7e-107 392.5 260 83.8
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.7e-107 392.5 277 78.7
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 6.0e-107 391.3 269 77.7
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.0e-106 390.6 262 82.4
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.7e-106 389.8 353 62.3
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 3.9e-106 388.7 274 74.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 1.9e-105 386.3 281 77.9
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 3.3e-105 385.6 331 70.7
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 4.0e-103 378.6 275 77.8
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.9e-100 369.8 230 88.7
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 5.4e-100 368.2 230 87.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 7.8e-99 364.4 222 92.3
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 3.1e-95 352.4 277 66.8
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 2.0e-94 349.7 222 89.2
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 1.9e-92 343.2 265 72.1
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.1e-91 339.7 250 78.0
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.1e-91 339.7 250 78.0
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 4.3e-89 332.0 275 66.5
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.3e-89 332.0 224 83.9
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 6.2e-88 328.2 313 66.1
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.4e-87 327.0 277 65.3
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.1e-87 325.9 274 69.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.5e-86 323.6 283 67.1
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 2.6e-86 322.8 281 66.2
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.4e-86 322.4 274 69.3
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.8e-74 283.5 258 63.2
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 6.9e-71 271.6 187 81.8
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 3.8e-69 265.8 274 55.8
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 4.6e-67 258.8 278 56.1
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.5e-60 236.5 156 76.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 2.1e-59 233.4 181 79.0
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.3e-58 229.9 145 91.0
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.1e-57 227.6 129 91.5
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.6e-56 223.8 138 84.1
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.9e-52 210.3 132 81.8
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 8.2e-48 194.9 300 45.0
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 6.1e-43 178.7 97 92.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.3e-42 176.8 106 84.9
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 2.2e-40 170.2 90 94.4
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 4.7e-35 152.5 84 89.3
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.2e-33 147.9 155 58.1
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.7e-32 144.1 80 90.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-30 137.1 74 91.9
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 2.0e-30 137.1 74 91.9
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 1.5e-28 131.0 80 80.0
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 1.2e-22 111.3 257 35.4
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-20 104.4 157 45.9
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-18 97.8 104 56.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.3e-18 97.1 71 87.3
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 2.3e-18 97.1 149 46.3
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-17 94.4 147 39.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.5e-17 94.4 57 78.9
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 3.4e-17 93.2 89 65.2
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.4e-17 93.2 156 39.1
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.5e-17 92.0 71 80.3
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.2e-16 90.5 157 40.1
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 8.3e-16 88.6 160 39.4
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.7e-14 82.0 46 87.0
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 3.8e-13 79.7 46 80.4
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.8e-13 79.7 155 33.5
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 8.6e-13 78.6 46 84.8
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.6e-11 73.2 157 38.9
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 6.1e-11 72.4 43 79.1
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.0e-10 71.6 331 27.2
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.8e-10 68.9 269 29.7
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 2.2e-08 63.9 140 41.4
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 5.9e-06 55.8 38 71.1


User provided reference genes

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