Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020778 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 0.0e+00 1980.3 1038 100.0
CSS0016995 Camellia sinensis var. sinensis HOM05D005171 ORTHO05D006343 0.0e+00 1964.5 1038 99.2
Actinidia20605 Actinidia chinensis HOM05D005171 ORTHO05D006343 0.0e+00 1112.1 1314 52.8
Actinidia20619 Actinidia chinensis HOM05D005171 ORTHO05D006343 0.0e+00 1100.1 1324 52.2
vmacro12061 Vaccinium macrocarpon HOM05D005171 ORTHO05D000013 1.4e-289 1000.0 1460 46.6
Rhsim06G0179100 Rhododendron simsii HOM05D005171 ORTHO05D006343 1.2e-261 907.1 1319 46.5
GSVIVG01030128001 Vitis vinifera HOM05D005171 ORTHO05D006343 2.0e-192 677.2 1001 43.9
Duzib138G0034 Durio zibethinus HOM05D005171 ORTHO05D006343 4.7e-173 612.8 1369 36.2
Thecc.01G199700 Theobroma cacao HOM05D005171 ORTHO05D006343 4.1e-169 599.7 1379 36.0
Dinv05326 Davidia involucrata HOM05D005171 ORTHO05D006343 1.6e-168 597.8 517 63.8
Oeu056856.1 Olea europaea HOM05D005171 ORTHO05D006343 3.6e-165 586.6 1331 36.5
QL04p066976 Quercus lobata HOM05D005171 ORTHO05D006343 7.6e-163 578.9 1403 34.1
COL.COLO4_19656 Corchorus olitorius HOM05D005171 ORTHO05D006343 1.4e-161 574.7 1272 36.6
Atru.chr6.3433 Acer truncatum HOM05D005171 ORTHO05D006343 1.1e-158 565.1 1432 33.7
Haze_12584 Corylus avellana HOM05D005171 ORTHO05D006343 1.6e-157 561.2 1413 34.3
Cfa014199 Carpinus fangiana HOM05D005171 ORTHO05D006343 2.2e-154 550.8 1351 34.0
MD17G1119600 Malus domestica HOM05D005171 ORTHO05D006343 4.9e-154 549.7 1368 33.6
DCAR_012742 Daucus carota HOM05D005171 ORTHO05D006343 1.1e-153 548.5 1284 35.6
Prupe.3G194100 Prunus persica HOM05D005171 ORTHO05D006343 1.2e-152 545.0 1406 32.9
Gorai.007G164500 Gossypium raimondii HOM05D005171 ORTHO05D006343 5.1e-151 539.7 1356 34.6
Nn1g07734 Nelumbo nucifera HOM05D005171 ORTHO05D006343 1.5e-150 538.1 1337 33.4
HanXRQChr13g0389891 Helianthus annuus HOM05D005171 ORTHO05D006343 9.6e-150 535.4 1129 37.5
MD09G1131900 Malus domestica HOM05D005171 ORTHO05D006343 1.7e-146 524.6 1381 32.8
TWI36G0325 Tripterygium wilfordii HOM05D005171 ORTHO05D006343 4.9e-146 523.1 1349 32.6
Manes.12G067100 Manihot esculenta HOM05D005171 ORTHO05D006343 7.9e-144 515.8 1418 31.7
Potri.001G315950 Populus trichocarpa HOM05D005171 ORTHO05D006343 4.3e-142 510.0 1364 32.6
HanXRQChr09g0257391 Helianthus annuus HOM05D005171 ORTHO05D006343 7.4e-142 509.2 1074 37.4
CANSAT64G2466 Cannabis sativa HOM05D005171 ORTHO05D006343 2.6e-139 500.7 1233 34.5
RcHm_v2.0_Chr2g0155571 Rosa chinensis HOM05D005171 ORTHO05D006343 3.4e-139 500.4 1324 33.3
Lj1C801G5 Lonicera japonica HOM05D005171 ORTHO05D006343 1.2e-136 491.9 1314 33.5
SGA_v2.0_scaffold181G39698 Striga asiatica HOM05D005171 ORTHO05D006343 3.9e-135 486.9 1320 33.1
Solyc07g045170.3 Solanum lycopersicum HOM05D005171 ORTHO05D006343 5.1e-135 486.5 1351 31.8
FAN05G5461 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.9e-134 484.6 1333 32.6
FAN09G0598 Fragaria x ananassa HOM05D005171 ORTHO05D006343 1.3e-133 481.9 1317 32.4
Cc05_g01980 Coffea canephora HOM05D005171 ORTHO05D006343 2.8e-133 480.7 1273 35.2
FvH4_6g40370 Fragaria vesca HOM05D005171 ORTHO05D006343 2.8e-133 480.7 1336 32.3
Lalb_Chr10g0094191 Lupinus albus HOM05D005171 ORTHO05D006343 8.2e-133 479.2 1120 35.7
Sopen07g023720 Solanum pennellii HOM05D005171 ORTHO05D006343 1.4e-132 478.4 1354 31.5
FAN14G5634 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.4e-132 477.6 1341 32.1
Migut.M00063 Erythranthe guttata HOM05D005171 ORTHO05D006343 6.9e-132 476.1 1314 33.3
Sabra16G0199800 Salix brachista HOM05D005171 ORTHO05D006343 1.5e-131 474.9 1401 30.6
FAN02G4474 Fragaria x ananassa HOM05D005171 ORTHO05D006343 2.8e-125 454.1 1316 32.3
Peaxi162Scf00359g00324 Petunia axillaris HOM05D005171 ORTHO05D006343 3.4e-123 447.2 1301 30.6
PGR083G1863 Punica granatum HOM05D005171 ORTHO05D006343 1.3e-122 445.3 1352 31.1
Ca_16333_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.7e-122 444.9 1166 33.4
Ca_30417_v3 Cicer arietinum L. HOM05D005171 ORTHO05D006343 1.7e-122 444.9 1166 33.4
Ciclev10014049m.g Citrus clementina HOM05D005171 ORTHO05D006343 3.8e-122 443.7 1392 30.6
Sed0008164 Sechium edule HOM05D005171 ORTHO05D006343 1.9e-121 441.4 1308 31.3
Sc20g0003130 Simmondsia chinensis HOM05D005171 ORTHO05D006343 1.6e-120 438.3 1324 30.4
Gohir.D11G154400 Gossypium hirsutum HOM05D005171 ORTHO05D006343 7.9e-120 436.0 1210 32.0
Lsat_1_v5_gn_7_97220 Lactuca sativa HOM05D005171 ORTHO05D006343 1.0e-119 435.6 1054 34.4
CsaV3_7G002340 Cucumis sativus L. HOM05D005171 ORTHO05D006343 8.8e-119 432.6 1334 30.1
Hund13065 Selenicereus undatus HOM05D005171 ORTHO05D006343 2.2e-117 427.9 1332 30.2
ClCG02G003060 Citrullus lanatus HOM05D005171 ORTHO05D006343 1.2e-115 422.2 1307 31.0
Lsat_1_v5_gn_9_102901 Lactuca sativa HOM05D005171 ORTHO05D006343 1.7e-114 418.3 1012 34.9
Sed0010628 Sechium edule HOM05D005171 ORTHO05D006343 2.2e-114 417.9 1339 29.9
Thhalv10002382m.g Eutrema salsugineum HOM05D005171 ORTHO05D006343 5.5e-113 413.3 1119 33.4
Sp3g23130 Schrenkiella parvula HOM05D005171 ORTHO05D006343 5.5e-113 413.3 1117 33.5
SalBow7G0294 Salvia bowleyana HOM05D005171 ORTHO05D006343 7.2e-113 412.9 1139 32.0
Aa31sc733G10 Aethionema arabicum HOM05D005171 ORTHO05D006343 2.3e-111 407.9 1168 32.5
Nitab4.5_0003086g0060 Nicotiana tabacum HOM05D005171 ORTHO05D006343 1.4e-108 398.7 1326 30.1
Glyma.13G008500 Glycine max HOM05D005171 ORTHO05D006343 1.2e-107 395.6 1231 30.3
BcaC06g35856 Brassica carinata HOM05D005171 ORTHO05D006343 1.0e-106 392.5 1134 32.8
BolC7t41487H Brassica oleracea HOM05D005171 ORTHO05D006343 1.0e-106 392.5 1134 32.8
Lj6g0011858 Lotus japonicus HOM05D005171 ORTHO05D006343 2.2e-106 391.3 1250 31.3
C07p10370 Brassica napus HOM05D005171 ORTHO05D006343 6.5e-106 389.8 1135 32.9
MBI14_g37363_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 8.5e-106 389.4 1380 30.3
VMungo0540G0527 Vigna mungo HOM05D005171 ORTHO05D006343 2.5e-105 387.9 1105 32.2
Gohir.D08G059000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 5.5e-105 386.7 508 44.7
Gorai.004G060900 Gossypium raimondii HOM05D005171 ORTHO05D006343 1.0e-103 382.5 509 44.2
BcaB06g26770 Brassica carinata HOM05D005171 ORTHO05D006343 8.8e-103 379.4 1125 32.4
TAR627G0484 Trochodendron aralioides HOM05D005171 ORTHO05D006343 8.8e-103 379.4 333 61.0
A07p06800 Brassica napus HOM05D005171 ORTHO05D006343 5.7e-102 376.7 1124 32.7
arahy.Tifrunner.gnm1.ann1.U10BM9 Arachis hypogaea HOM05D005171 ORTHO05D006343 3.7e-101 374.0 1133 32.1
EL10Ac2g03228 Beta vulgaris HOM05D005171 ORTHO05D006343 1.8e-100 371.7 1305 30.0
THA.LOC104815372 Tarenaya hassleriana HOM05D005171 ORTHO05D006343 4.1e-100 370.5 1286 31.2
Cpa.g.sc136.57 Carica papaya HOM05D005171 ORTHO05D006343 1.2e-99 369.0 1210 30.2
arahy.Tifrunner.gnm1.ann1.DUBF95 Arachis hypogaea HOM05D005171 ORTHO05D006343 2.3e-95 354.8 992 32.0
BraA07t28471Z Brassica rapa HOM05D005171 ORTHO05D006343 2.3e-95 354.8 1103 31.7
AL3G41930 Arabidopsis lyrata HOM05D005171 ORTHO05D006343 2.0e-94 351.7 1237 29.2
Phvul.006G005000 Phaseolus vulgaris HOM05D005171 ORTHO05D006343 2.0e-94 351.7 1064 30.4
CiPaw.03G284100 Carya illinoinensis HOM05D005171 ORTHO05D006343 5.7e-94 350.1 453 45.3
Psat5g105360 Pisum sativum HOM05D005171 ORTHO05D006343 2.4e-92 344.7 470 43.8
TAR627G0657 Trochodendron aralioides HOM05D005171 ORTHO05D006343 3.5e-91 340.9 568 44.2
Glyma.20G060900 Glycine max HOM05D005171 ORTHO05D006343 1.7e-90 338.6 465 43.4
AT2G04235 Arabidopsis thaliana HOM05D005171 ORTHO05D006343 6.5e-90 336.7 1241 29.1
Eucgr.A01375 Eucalyptus grandis HOM05D005171 ORTHO05D006343 1.1e-89 335.9 518 38.2
Gohir.A11G147500 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.7e-88 330.5 1108 29.7
PSO541G4744 Papaver somniferum HOM05D005171 ORTHO05D006343 2.7e-83 314.7 653 37.4
Nitab4.5_0004941g0030 Nicotiana tabacum HOM05D005171 ORTHO05D006343 5.6e-81 307.0 1336 26.7
Hma1.2p1_0629F.1_g192130 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 7.2e-81 306.6 280 60.7
arahy.Tifrunner.gnm1.ann1.DEY0FQ Arachis hypogaea HOM05D005171 ORTHO05D006343 9.5e-81 306.2 992 29.5
ECA240G4228 Erigeron canadensis HOM05D005171 ORTHO05D006343 9.5e-81 306.2 823 32.2
MELO3C024178.2 Cucumis melo HOM05D005171 ORTHO05D006343 1.2e-80 305.8 1324 28.3
Aqoxy1G04295 Aquilegia oxysepala HOM05D005171 ORTHO05D006343 1.8e-79 302.0 1089 30.6
AUR62037747 Chenopodium quinoa HOM05D005171 ORTHO05D006343 8.9e-79 299.7 1362 26.5
Ah.10g032550 Amaranthus hybridus HOM05D005171 ORTHO05D006343 9.8e-78 296.2 1244 28.3
PSO017G5154 Papaver somniferum HOM05D005171 ORTHO05D006343 7.0e-76 290.0 1253 27.8
AUR62018228 Chenopodium quinoa HOM05D005171 ORTHO05D006343 2.3e-74 285.0 1350 26.1
VMungo0331G1557 Vigna mungo HOM05D005171 ORTHO05D006343 2.5e-73 281.6 482 38.6
Carub.0003s2593 Capsella rubella HOM05D005171 ORTHO05D006343 1.6e-72 278.9 1363 24.9
arahy.Tifrunner.gnm1.ann1.CJRH42 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.4e-68 265.8 684 31.3
Gohir.A08G049000 Gossypium hirsutum HOM05D005171 ORTHO05D006343 4.1e-68 264.2 394 41.1
unitig_37.g12589 Utricularia gibba HOM05D005171 ORTHO05D006343 1.0e-66 259.6 1220 27.0
CDE01G0402 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 1.1e-65 256.1 1282 26.2
Hma1.2p1_0629F.1_g192120 Hydrangea macrophylla HOM05D005171 ORTHO05D006343 4.7e-64 250.8 322 52.8
HPP92_000125 Vanilla planifolia HOM05D005171 ORTHO05D006343 7.5e-62 243.4 1128 25.4
Zm00001eb386590 Zea mays HOM05D005171 ORTHO05D006343 2.9e-61 241.5 1079 25.9
PSO478G2888 Papaver somniferum HOM05D005171 ORTHO05D006343 2.7e-59 235.0 311 46.0
ATR0751G269 Amborella trichopoda HOM05D005171 ORTHO05D006343 3.6e-56 224.6 408 36.5
MBI14_g33664_MAGBIO Magnolia biondii HOM05D005171 ORTHO05D006343 3.1e-55 221.5 261 49.4
Dinv21324 Davidia involucrata HOM05D005171 ORTHO05D006343 4.6e-51 207.6 146 75.3
Actinidia12355 Actinidia chinensis HOM05D005171 ORTHO05D006343 7.8e-43 180.3 302 45.0
Duzib211G0583 Durio zibethinus HOM05D005171 ORTHO05D006343 4.4e-38 164.5 141 56.0
TPR.G27424 Trifolium pratense HOM05D005171 ORTHO05D006343 1.7e-37 162.5 257 47.1
arahy.Tifrunner.gnm1.ann1.AZD9M5 Arachis hypogaea HOM05D005171 ORTHO05D006343 1.0e-34 153.3 333 40.2
PSO478G0307 Papaver somniferum HOM05D005171 ORTHO05D006343 3.8e-29 134.8 257 41.2
TPR.G30970 Trifolium pratense HOM05D005171 ORTHO05D006343 1.1e-25 123.2 150 42.7
Os06g0608100 Oryza sativa ssp. japonica HOM05D005171 ORTHO05D006343 4.3e-25 121.3 250 38.0
PSO675G6191 Papaver somniferum HOM05D005171 ORTHO05D006343 1.4e-23 116.3 130 50.0
Glyma.20G061000 Glycine max HOM05D005171 ORTHO05D006343 1.7e-21 109.4 283 37.1
PGSC0003DMG400017412 Solanum tuberosum HOM05D005171 ORTHO05D006343 1.7e-21 109.4 115 49.6
Oeu036991.1 Olea europaea HOM05D005171 ORTHO05D006343 2.4e-15 89.0 262 30.9
ECA240G0272 Erigeron canadensis HOM05D004103 ORTHO05D005242 1.2e-14 86.7 143 45.5
DCAR_030669 Daucus carota HOM05D001959 ORTHO05D006343 4.5e-14 84.7 153 34.6
DCAR_030665 Daucus carota HOM05D005171 ORTHO05D006343 6.5e-13 80.9 80 52.5
Actinidia12356 Actinidia chinensis HOM05D005171 ORTHO05D006343 3.2e-12 78.6 56 71.4
Actinidia12354 Actinidia chinensis HOM05D005171 ORTHO05D006343 1.0e-10 73.6 89 49.4
CANSAT11G0838 Cannabis sativa HOM05D005171 ORTHO05D006343 3.9e-10 71.6 79 48.1
SEGI_15711 Sequoiadendron giganteum HOM05D005171 ORTHO05D006343 3.9e-10 71.6 113 38.1
SEGI_14020 Sequoiadendron giganteum HOM05D005171 ORTHO05D026698 6.7e-10 70.9 261 28.4
MD09G1132400 Malus domestica HOM05D005171 ORTHO05D006343 1.9e-09 69.3 65 60.0
CDE02G3322 Ceratophyllum demersum HOM05D005171 ORTHO05D006343 3.3e-09 68.6 129 38.8
Gohir.A11G147450 Gossypium hirsutum HOM05D005171 ORTHO05D006343 1.6e-08 66.2 117 47.9
SalBow7G0566 Salvia bowleyana HOM05D005171 ORTHO05D006343 6.9e-07 60.8 100 44.0
Gohir.D11G154350 Gossypium hirsutum HOM05D005171 ORTHO05D006343 9.0e-07 60.5 117 47.9


User provided reference genes

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