Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020740 Camellia sinensis var. sinensis HOM05D005186 ORTHO05D006278 8.9e-158 560.5 333 100.0
Dinv28566 Davidia involucrata HOM05D005186 ORTHO05D006278 1.4e-81 307.4 349 60.5
Hma1.2p1_0432F.1_g151690 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 9.8e-80 301.2 349 63.6
Actinidia13575 Actinidia chinensis HOM05D005186 ORTHO05D006278 3.7e-79 299.3 383 59.5
vmacro06793 Vaccinium macrocarpon HOM05D005186 ORTHO05D006278 1.3e-76 290.8 350 54.0
RhsimUnG0046700 Rhododendron simsii HOM05D005186 ORTHO05D006278 2.5e-75 286.6 359 58.5
Oeu042561.2 Olea europaea HOM05D005186 ORTHO05D006278 4.2e-75 285.8 345 60.3
Nitab4.5_0001383g0010 Nicotiana tabacum HOM05D005186 ORTHO05D006278 1.6e-74 283.9 340 58.5
Oeu022491.2 Olea europaea HOM05D005186 ORTHO05D006278 1.8e-73 280.4 347 62.8
TAR374G0329 Trochodendron aralioides HOM05D005186 ORTHO05D006278 3.7e-71 272.7 348 58.6
CAN.G48.15 Capsicum annuum HOM05D005186 ORTHO05D006278 1.4e-70 270.8 338 57.1
Hma1.2p1_1640F.1_g295100 Hydrangea macrophylla HOM05D005186 ORTHO05D006278 1.4e-70 270.8 340 60.0
Atru.chr1.716 Acer truncatum HOM05D005186 ORTHO05D006278 2.4e-70 270.0 341 55.7
Dinv22950 Davidia involucrata HOM05D005186 ORTHO05D006278 1.2e-69 267.7 317 61.2
Duzib205G1009 Durio zibethinus HOM05D005186 ORTHO05D006278 3.9e-68 262.7 339 57.8
Cc02_g04200 Coffea canephora HOM05D005186 ORTHO05D006278 8.6e-68 261.5 356 57.6
Thecc.03G156500 Theobroma cacao HOM05D005186 ORTHO05D006278 1.5e-67 260.8 339 58.1
CiPaw.03G094100 Carya illinoinensis HOM05D005186 ORTHO05D006278 1.9e-67 260.4 343 58.6
Cpa.g.sc3.315 Carica papaya HOM05D005186 ORTHO05D006278 4.3e-67 259.2 346 56.6
CiPaw.04G060200 Carya illinoinensis HOM05D005186 ORTHO05D006278 4.3e-67 259.2 337 59.6
Haze_13870 Corylus avellana HOM05D005186 ORTHO05D006278 2.8e-66 256.5 349 56.4
Nn1g01074 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.0e-65 254.6 352 55.7
Lj8A42G21 Lonicera japonica HOM05D005186 ORTHO05D006278 3.1e-65 253.1 344 56.1
Nitab4.5_0003875g0030 Nicotiana tabacum HOM05D005186 ORTHO05D006278 4.0e-65 252.7 338 56.5
Migut.F00469 Erythranthe guttata HOM05D005186 ORTHO05D006278 6.8e-65 251.9 341 56.3
Potri.015G126800 Populus trichocarpa HOM05D005186 ORTHO05D006278 4.4e-64 249.2 341 56.0
TWI23G1038 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 7.5e-64 248.4 343 53.6
Nn6g34030 Nelumbo nucifera HOM05D005186 ORTHO05D006278 1.3e-63 247.7 356 57.0
TWI39G1272 Tripterygium wilfordii HOM05D005186 ORTHO05D006278 1.3e-63 247.7 358 50.8
Gohir.D03G107500 Gossypium hirsutum HOM05D005186 ORTHO05D006278 2.2e-63 246.9 340 56.2
Manes.14G035500 Manihot esculenta HOM05D005186 ORTHO05D006278 2.2e-63 246.9 341 54.8
Solyc03g083970.3 Solanum lycopersicum HOM05D005186 ORTHO05D006278 2.9e-63 246.5 339 56.0
Potri.012G126000 Populus trichocarpa HOM05D005186 ORTHO05D006278 6.4e-63 245.4 346 55.8
Gorai.003G113800 Gossypium raimondii HOM05D005186 ORTHO05D006278 1.1e-62 244.6 340 55.9
Peaxi162Scf00241g00318 Petunia axillaris HOM05D005186 ORTHO05D006278 2.4e-62 243.4 344 57.6
Sopen03g023730 Solanum pennellii HOM05D005186 ORTHO05D006278 4.1e-62 242.7 341 56.0
Sabra15G0140200 Salix brachista HOM05D005186 ORTHO05D006278 7.0e-62 241.9 340 52.1
Ciclev10005111m.g Citrus clementina HOM05D005186 ORTHO05D006278 1.2e-61 241.1 337 53.7
Gohir.A03G058600 Gossypium hirsutum HOM05D005186 ORTHO05D006278 1.6e-61 240.7 340 55.6
CANSAT56G0052 Cannabis sativa HOM05D005186 ORTHO05D006278 2.0e-61 240.4 348 51.4
PGSC0003DMG400013858 Solanum tuberosum HOM05D005186 ORTHO05D006278 1.3e-60 237.7 344 54.4
HanXRQChr14g0461411 Helianthus annuus HOM05D005186 ORTHO05D006278 5.0e-60 235.7 340 53.2
Manes.06G135200 Manihot esculenta HOM05D005186 ORTHO05D006278 1.9e-59 233.8 343 55.4
Sabra12G0094900 Salix brachista HOM05D005186 ORTHO05D006278 3.3e-59 233.0 340 55.3
SGA_v2.0_scaffold543G52822 Striga asiatica HOM05D005186 ORTHO05D006278 3.3e-59 233.0 344 50.6
Aqoxy7G00728 Aquilegia oxysepala HOM05D005186 ORTHO05D006278 5.6e-59 232.3 341 50.7
MBI04_g37589_MAGBIO Magnolia biondii HOM05D005186 ORTHO05D006278 1.4e-57 227.6 352 50.9
COL.COLO4_14129 Corchorus olitorius HOM05D005186 ORTHO05D006278 6.8e-57 225.3 338 53.3
PGR042G0730 Punica granatum HOM05D005186 ORTHO05D006278 8.9e-57 224.9 349 52.7
Eucgr.A02891 Eucalyptus grandis HOM05D005186 ORTHO05D006278 3.4e-56 223.0 365 50.1
QL09p019611 Quercus lobata HOM05D005186 ORTHO05D006278 7.5e-56 221.9 361 51.8
Sc13g0007880 Simmondsia chinensis HOM05D005186 ORTHO05D006278 7.5e-56 221.9 345 50.1
Lj3g0017931 Lotus japonicus HOM05D005186 ORTHO05D006278 2.2e-55 220.3 353 45.6
Prupe.2G277700 Prunus persica HOM05D005186 ORTHO05D006278 6.4e-55 218.8 348 52.6
Hund11823 Selenicereus undatus HOM05D005186 ORTHO05D006278 6.4e-55 218.8 353 53.8
PSO170G0780 Papaver somniferum HOM05D005186 ORTHO05D006278 1.1e-54 218.0 354 52.0
MSTRG.128 Avicennia marina HOM05D005186 ORTHO05D006278 2.4e-54 216.9 349 50.1
CsaV3_7G006320 Cucumis sativus L. HOM05D005186 ORTHO05D006278 3.2e-54 216.5 350 46.3
SGA_v2.0_scaffold2G01194 Striga asiatica HOM05D005186 ORTHO05D006278 5.4e-54 215.7 341 53.4
PSO017G1100 Papaver somniferum HOM05D005186 ORTHO05D006278 9.2e-54 214.9 353 52.4
SalBow2G2587 Salvia bowleyana HOM05D005186 ORTHO05D006278 1.2e-53 214.5 334 49.1
EL10Ac3g05838 Beta vulgaris HOM05D005186 ORTHO05D006278 2.1e-53 213.8 333 53.2
ClCG09G015150 Citrullus lanatus HOM05D005186 ORTHO05D006278 1.7e-52 210.7 350 47.1
arahy.Tifrunner.gnm1.ann1.7NC073 Arachis hypogaea HOM05D005186 ORTHO05D006278 2.5e-51 206.8 361 48.5
MELO3C018660.2 Cucumis melo HOM05D005186 ORTHO05D006278 2.5e-51 206.8 345 47.0
PGR142G0385 Punica granatum HOM05D005186 ORTHO05D006278 4.3e-51 206.1 365 50.7
DCAR_020192 Daucus carota HOM05D005186 ORTHO05D006278 9.5e-51 204.9 335 48.4
Lsat_1_v5_gn_2_129120 Lactuca sativa HOM05D005186 ORTHO05D006278 9.5e-51 204.9 348 48.6
unitig_1.g29355 Utricularia gibba HOM05D005186 ORTHO05D006278 9.5e-51 204.9 338 47.6
unitig_747.g22057 Utricularia gibba HOM05D005186 ORTHO05D006278 9.5e-51 204.9 338 47.6
CDE02G0091 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 6.2e-50 202.2 339 43.4
FAN01G3063 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.1e-49 199.9 341 49.6
FAN10G1701 Fragaria x ananassa HOM05D005186 ORTHO05D006278 3.1e-49 199.9 345 48.1
FAN03G1399 Fragaria x ananassa HOM05D005186 ORTHO05D006278 4.0e-49 199.5 344 48.8
RcHm_v2.0_Chr1g0374461 Rosa chinensis HOM05D005186 ORTHO05D006278 5.2e-49 199.1 349 47.9
Ah.07g207900 Amaranthus hybridus HOM05D005186 ORTHO05D006278 8.9e-49 198.4 340 49.4
arahy.Tifrunner.gnm1.ann1.UNN1LQ Arachis hypogaea HOM05D005186 ORTHO05D006278 8.9e-49 198.4 373 47.2
FvH4_7g27600 Fragaria vesca HOM05D005186 ORTHO05D006278 1.2e-48 198.0 345 49.3
FAN06G2498 Fragaria x ananassa HOM05D005186 ORTHO05D006278 1.2e-48 198.0 344 48.8
Sed0012571 Sechium edule HOM05D005186 ORTHO05D006278 3.4e-48 196.4 342 52.0
FAN06G5126 Fragaria x ananassa HOM05D005186 ORTHO05D006278 2.2e-47 193.7 342 49.4
Sed0005126 Sechium edule HOM05D005186 ORTHO05D006278 8.3e-47 191.8 340 43.5
Phvul.011G006100 Phaseolus vulgaris HOM05D005186 ORTHO05D006278 1.1e-46 191.4 376 46.8
VMungo1127G0816 Vigna mungo HOM05D005186 ORTHO05D006278 1.1e-46 191.4 376 49.2
Glyma.12G005300 Glycine max HOM05D005186 ORTHO05D006278 7.1e-46 188.7 361 46.0
ECA238G0955 Erigeron canadensis HOM05D005186 ORTHO05D006278 1.6e-45 187.6 322 51.6
Glyma.09G231200 Glycine max HOM05D005186 ORTHO05D006278 1.6e-45 187.6 364 46.2
TAR375G0993 Trochodendron aralioides HOM05D005186 ORTHO05D006278 7.8e-45 185.3 270 57.0
TPR.G3671 Trifolium pratense HOM05D005186 ORTHO05D006278 2.3e-44 183.7 360 44.2
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 2.5e-43 180.3 349 45.6
Lalb_Chr01g0000291 Lupinus albus HOM05D005186 ORTHO05D006278 9.6e-43 178.3 239 52.3
Lalb_Chr19g0140361 Lupinus albus HOM05D005186 ORTHO05D006278 1.2e-42 177.9 250 52.0
HPP92_022436 Vanilla planifolia HOM05D005186 ORTHO05D006278 3.2e-38 163.3 302 44.0
GSVIVG01018630001 Vitis vinifera HOM05D005186 ORTHO05D006278 7.1e-38 162.2 210 53.8
Thhalv10004201m.g Eutrema salsugineum HOM05D005186 ORTHO05D006278 5.1e-36 156.0 397 40.3
C03p64500 Brassica napus HOM05D005186 ORTHO05D006278 2.5e-35 153.7 363 45.5
Hund04601 Selenicereus undatus HOM05D005186 ORTHO05D006278 2.5e-35 153.7 339 43.4
AUR62015515 Chenopodium quinoa HOM05D005186 ORTHO05D006278 4.3e-35 152.9 114 76.3
BcaC01g02463 Brassica carinata HOM05D005186 ORTHO05D006278 7.3e-35 152.1 363 45.2
Sp2g25560 Schrenkiella parvula HOM05D005186 ORTHO05D006278 7.3e-35 152.1 416 39.2
AL8G39220 Arabidopsis lyrata HOM05D005186 ORTHO05D006278 2.1e-34 150.6 397 39.8
AUR62002195 Chenopodium quinoa HOM05D005186 ORTHO05D006278 3.6e-34 149.8 114 75.4
Psat7g207000 Pisum sativum HOM05D005186 ORTHO05D006278 8.1e-34 148.7 158 62.0
Thecc.01G380900 Theobroma cacao HOM05D005186 ORTHO05D006278 1.5e-32 144.4 318 40.6
Migut.F01178 Erythranthe guttata HOM05D005186 ORTHO05D006278 2.6e-32 143.7 103 76.7
AT5G62390 Arabidopsis thaliana HOM05D005186 ORTHO05D006278 4.4e-32 142.9 394 38.6
ATR1153G063 Amborella trichopoda HOM05D005186 ORTHO05D006278 7.6e-32 142.1 379 39.1
Aa31LG11G1230 Aethionema arabicum HOM05D005186 ORTHO05D006278 6.4e-31 139.0 388 40.2
BolC3t18705H Brassica oleracea HOM05D005186 ORTHO05D006278 6.4e-31 139.0 388 40.5
Carub.0008s2307 Capsella rubella HOM05D005186 ORTHO05D006278 1.4e-30 137.9 409 38.1
CDE11G1075 Ceratophyllum demersum HOM05D005186 ORTHO05D006278 1.4e-30 137.9 344 39.0
BolC1t01505H Brassica oleracea HOM05D005186 ORTHO05D006278 1.9e-30 137.5 398 34.4
C01p15530 Brassica napus HOM05D005186 ORTHO05D006278 4.2e-30 136.3 403 35.2
COL.COLO4_12507 Corchorus olitorius HOM05D005186 ORTHO05D006278 9.3e-30 135.2 314 37.6
THA.LOC104821410 Tarenaya hassleriana HOM05D005186 ORTHO05D006278 2.7e-29 133.7 405 40.2
CARHR276170 Cardamine hirsuta HOM05D005186 ORTHO05D006278 6.0e-29 132.5 397 38.8
Ca_25005_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 2.3e-28 130.6 100 72.0
BraA01t01233Z Brassica rapa HOM05D005186 ORTHO05D006278 1.9e-27 127.5 404 38.6
A01p12890 Brassica napus HOM05D005186 ORTHO05D006278 9.6e-27 125.2 411 37.0
BcaNung02779 Brassica carinata HOM05D005186 ORTHO05D006278 1.3e-26 124.8 105 64.8
Zm00001eb229450 Zea mays HOM05D005186 ORTHO05D006278 1.3e-26 124.8 160 50.0
Zm00001eb379410 Zea mays HOM05D005186 ORTHO05D006278 1.6e-26 124.4 313 36.4
SHI13968 Sapria himalayana HOM05D005186 ORTHO05D006278 2.4e-25 120.6 341 33.4
Os06g0104400 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 2.6e-24 117.1 106 62.3
HanXRQChr05g0146091 Helianthus annuus HOM05D005186 ORTHO05D006278 4.5e-24 116.3 96 67.7
Os02g0105500 Oryza sativa ssp. japonica HOM05D005186 ORTHO05D006278 2.2e-23 114.0 136 48.5
BcaC01g02462 Brassica carinata HOM05D005186 ORTHO05D006278 4.6e-21 106.3 79 70.9
CAN.G319.13 Capsicum annuum HOM05D005186 ORTHO05D006278 3.3e-19 100.1 74 70.3
GSVIVG01000691001 Vitis vinifera HOM05D005186 ORTHO05D006278 1.6e-18 97.8 85 67.1
COL.COLO4_07114 Corchorus olitorius HOM05D005186 ORTHO05D006278 2.1e-18 97.4 80 71.2
GSVIVG01000692001 Vitis vinifera HOM05D005186 ORTHO05D006278 4.8e-18 96.3 85 67.1
Atru.chr5.265 Acer truncatum HOM05D005186 ORTHO05D006278 1.4e-14 84.7 62 67.7
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 7.4e-11 72.4 83 43.4
CAN.G1067.7 Capsicum annuum HOM05D005186 ORTHO05D006278 8.2e-10 68.9 53 69.8
RcHm_v2.0_Chr1g0335331 Rosa chinensis HOM05D005186 ORTHO05D006278 2.0e-08 64.3 62 66.1
A06p29100 Brassica napus HOM05D005186 ORTHO05D006278 3.8e-07 60.1 137 35.8
Ca_25004_v3 Cicer arietinum L. HOM05D005186 ORTHO05D006278 3.2e-06 57.0 270 30.4


User provided reference genes

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