Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020729 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.5e-113 412.9 212 100.0
CSS0041988 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.5e-113 412.9 212 100.0
CSS0021373 Camellia sinensis var. sinensis HOM05D004800 ORTHO05D005842 1.1e-97 360.1 187 98.4
Dinv13413 Davidia involucrata HOM05D004800 ORTHO05D005842 2.0e-86 322.8 207 80.2
Dinv08182 Davidia involucrata HOM05D004800 ORTHO05D005842 4.2e-84 315.1 207 78.3
Rhsim07G0165700 Rhododendron simsii HOM05D004800 ORTHO05D005842 1.3e-80 303.5 203 75.4
Lj7A735T34 Lonicera japonica HOM05D004800 ORTHO05D005842 3.1e-79 298.9 202 73.8
vmacro05151 Vaccinium macrocarpon HOM05D004800 ORTHO05D005842 3.1e-79 298.9 197 77.7
Haze_21408 Corylus avellana HOM05D004800 ORTHO05D005842 2.2e-77 292.7 209 73.2
Hma1.2p1_0389F.1_g142470 Hydrangea macrophylla HOM05D004800 ORTHO05D005842 2.4e-76 289.3 210 71.4
Cfa013047 Carpinus fangiana HOM05D004800 ORTHO05D005842 2.7e-75 285.8 208 72.1
Gorai.009G063300 Gossypium raimondii HOM05D004800 ORTHO05D005842 1.8e-74 283.1 212 70.3
Prupe.1G394400 Prunus persica HOM05D004800 ORTHO05D005842 5.1e-74 281.6 212 70.3
Gohir.D05G062200 Gossypium hirsutum HOM05D004800 ORTHO05D005842 1.1e-73 280.4 212 69.3
MSTRG.25830 Avicennia marina HOM05D004800 ORTHO05D005842 2.5e-73 279.3 210 67.6
Thecc.09G015200 Theobroma cacao HOM05D004800 ORTHO05D005842 4.3e-73 278.5 206 72.3
Actinidia14132 Actinidia chinensis HOM05D004800 ORTHO05D005842 1.3e-72 276.9 212 71.2
Lsat_1_v5_gn_5_49760 Lactuca sativa HOM05D004800 ORTHO05D005842 2.1e-72 276.2 209 70.3
COL.COLO4_18955 Corchorus olitorius HOM05D004800 ORTHO05D005842 3.7e-72 275.4 207 69.6
Ciclev10009140m.g Citrus clementina HOM05D004800 ORTHO05D005842 6.2e-72 274.6 212 66.0
Gohir.A05G060000 Gossypium hirsutum HOM05D004800 ORTHO05D005842 8.1e-72 274.2 212 68.9
Cpa.g.sc148.17 Carica papaya HOM05D004800 ORTHO05D005842 1.1e-71 273.9 208 70.7
Duzib168G1619 Durio zibethinus HOM05D004800 ORTHO05D005842 3.1e-71 272.3 206 69.4
Actinidia23108 Actinidia chinensis HOM05D004800 ORTHO05D005842 4.0e-71 271.9 213 70.0
DCAR_022862 Daucus carota HOM05D004800 ORTHO05D005842 5.3e-71 271.6 191 71.2
TAR625G0162 Trochodendron aralioides HOM05D004800 ORTHO05D005842 5.3e-71 271.6 209 67.9
Manes.03G008100 Manihot esculenta HOM05D004800 ORTHO05D005842 1.2e-70 270.4 210 65.7
CiPaw.08G005800 Carya illinoinensis HOM05D004800 ORTHO05D005842 2.0e-70 269.6 210 67.1
TAR625G0311 Trochodendron aralioides HOM05D004800 ORTHO05D005842 2.0e-70 269.6 209 67.9
Manes.16G130200 Manihot esculenta HOM05D004800 ORTHO05D005842 4.5e-70 268.5 199 68.8
Potri.006G264700 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.0e-69 267.3 213 63.8
RcHm_v2.0_Chr6g0299361 Rosa chinensis HOM05D004800 ORTHO05D005842 2.9e-69 265.8 215 65.1
Cc08_g07200 Coffea canephora HOM05D004800 ORTHO05D005842 8.4e-69 264.2 208 69.7
SalBow4G3208 Salvia bowleyana HOM05D004800 ORTHO05D005842 1.1e-68 263.8 215 65.6
FAN27G0477 Fragaria x ananassa HOM05D004800 ORTHO05D005842 3.2e-68 262.3 213 64.8
Oeu001621.3 Olea europaea HOM05D004800 ORTHO05D005842 7.1e-68 261.2 210 62.4
QL02p018802 Quercus lobata HOM05D004800 ORTHO05D005842 7.1e-68 261.2 208 65.4
SGA_v2.0_scaffold147G36341 Striga asiatica HOM05D004800 ORTHO05D005842 1.2e-67 260.4 209 63.6
FvH4_2g41170 Fragaria vesca HOM05D004800 ORTHO05D005842 1.6e-67 260.0 213 63.4
FAN20G2958 Fragaria x ananassa HOM05D004800 ORTHO05D005842 1.6e-67 260.0 213 64.3
HanXRQChr13g0411011 Helianthus annuus HOM05D004800 ORTHO05D005842 1.0e-66 257.3 199 66.3
Sed0002840 Sechium edule HOM05D004800 ORTHO05D005842 1.0e-66 257.3 212 63.7
Lj1g0022737 Lotus japonicus HOM05D004800 ORTHO05D005842 3.0e-66 255.8 200 68.0
CANSAT25G3039 Cannabis sativa HOM05D004800 ORTHO05D005842 3.9e-66 255.4 206 65.5
Nitab4.5_0010613g0010 Nicotiana tabacum HOM05D004800 ORTHO05D005842 3.9e-66 255.4 216 64.4
GSVIVG01035974001 Vitis vinifera HOM05D004800 ORTHO05D005842 6.7e-66 254.6 178 73.6
TWI34G0615 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 8.7e-66 254.2 194 66.0
TWI32G1317 Tripterygium wilfordii HOM05D004800 ORTHO05D005842 1.9e-65 253.1 194 66.5
Oeu009650.1 Olea europaea HOM05D004800 ORTHO05D005842 3.3e-65 252.3 210 61.0
Sabra06G0206800 Salix brachista HOM05D004800 ORTHO05D005842 7.4e-65 251.1 202 62.4
Solyc07g008750.4 Solanum lycopersicum HOM05D004800 ORTHO05D005842 2.8e-64 249.2 200 64.5
CAN.G333.3 Capsicum annuum HOM05D004800 ORTHO05D005842 4.8e-64 248.4 202 64.9
Migut.A00358 Erythranthe guttata HOM05D004800 ORTHO05D005842 4.8e-64 248.4 207 63.3
Psat5g033480 Pisum sativum HOM05D004800 ORTHO05D005842 1.8e-63 246.5 202 63.9
Sopen07g004690 Solanum pennellii HOM05D004800 ORTHO05D005842 3.1e-63 245.7 202 63.9
Ca_15781_v3 Cicer arietinum L. HOM05D004800 ORTHO05D005842 4.1e-63 245.4 197 67.0
Eucgr.L02918 Eucalyptus grandis HOM05D004800 ORTHO05D005842 6.9e-63 244.6 207 62.3
Phvul.009G086600 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 9.0e-63 244.2 202 63.4
Sabra18G0021000 Salix brachista HOM05D004800 ORTHO05D005842 9.0e-63 244.2 201 64.2
TPR.G1887 Trifolium pratense HOM05D004800 ORTHO05D005842 3.4e-62 242.3 197 64.5
CsaV3_4G036490 Cucumis sativus L. HOM05D004800 ORTHO05D005842 4.5e-62 241.9 212 61.3
Sc09g0010680 Simmondsia chinensis HOM05D004800 ORTHO05D005842 4.5e-62 241.9 197 64.0
PGSC0003DMG401028727 Solanum tuberosum HOM05D004800 ORTHO05D005842 4.5e-62 241.9 202 62.9
VMungo1309G1055 Vigna mungo HOM05D004800 ORTHO05D005842 4.5e-62 241.9 202 63.9
Eucgr.C02606 Eucalyptus grandis HOM05D004800 ORTHO05D005842 1.0e-61 240.7 207 61.8
PSO384G2235 Papaver somniferum HOM05D004800 ORTHO05D005842 2.9e-61 239.2 209 60.3
PSO339G1021 Papaver somniferum HOM05D004800 ORTHO05D005842 5.0e-61 238.4 207 60.4
unitig_749.g13819 Utricularia gibba HOM05D004800 ORTHO05D005842 8.4e-61 237.7 203 60.6
Peaxi162Scf00006g00249 Petunia axillaris HOM05D004800 ORTHO05D005842 1.1e-60 237.3 202 63.9
Atru.chr7.2559 Acer truncatum HOM05D004800 ORTHO05D005842 1.4e-60 236.9 198 60.6
AUR62032420 Chenopodium quinoa HOM05D004800 ORTHO05D005842 3.2e-60 235.7 205 60.0
MELO3C016954.2 Cucumis melo HOM05D004800 ORTHO05D005842 4.2e-60 235.3 212 59.0
AUR62024801 Chenopodium quinoa HOM05D004800 ORTHO05D005842 1.2e-59 233.8 205 59.5
Medtr3g105925 Medicago truncatula HOM05D004800 ORTHO05D005842 2.7e-59 232.6 199 62.8
THA.LOC104814986 Tarenaya hassleriana HOM05D004800 ORTHO05D005842 3.5e-59 232.3 198 61.6
Hund02986 Selenicereus undatus HOM05D004800 ORTHO05D005842 4.6e-59 231.9 210 60.0
ClCG05G016220 Citrullus lanatus HOM05D004800 ORTHO05D005842 2.3e-58 229.6 212 59.0
A06p35840 Brassica napus HOM05D004800 ORTHO05D005842 8.7e-58 227.6 217 55.8
BraA06t26509Z Brassica rapa HOM05D004800 ORTHO05D005842 8.7e-58 227.6 217 55.8
Aqoxy7G03382 Aquilegia oxysepala HOM05D004800 ORTHO05D005842 9.7e-57 224.2 208 61.1
Glyma.06G061100 Glycine max HOM05D004800 ORTHO05D005842 1.6e-56 223.4 203 58.6
MD08G1055900 Malus domestica HOM05D004800 ORTHO05D005842 2.2e-56 223.0 206 56.3
EL10Ac2g02494 Beta vulgaris HOM05D004800 ORTHO05D005842 2.8e-56 222.6 205 60.0
BcaNung03198 Brassica carinata HOM05D004800 ORTHO05D005842 2.8e-56 222.6 216 55.1
Sp2g22450 Schrenkiella parvula HOM05D004800 ORTHO05D005842 4.8e-56 221.9 213 55.4
BcaNung02298 Brassica carinata HOM05D004800 ORTHO05D005842 8.2e-56 221.1 219 54.8
Lalb_Chr11g0063501 Lupinus albus HOM05D004800 ORTHO05D005842 8.2e-56 221.1 170 70.0
AT5G25080 Arabidopsis thaliana HOM05D004800 ORTHO05D005842 4.1e-55 218.8 215 54.0
PGR044G1902 Punica granatum HOM05D004800 ORTHO05D005842 4.1e-55 218.8 201 58.2
BcaC04g23570 Brassica carinata HOM05D004800 ORTHO05D005842 3.8e-53 212.2 205 57.1
C09p07000 Brassica napus HOM05D004800 ORTHO05D005842 3.8e-53 212.2 205 57.1
BraA09t36276Z Brassica rapa HOM05D004800 ORTHO05D005842 8.5e-53 211.1 214 56.1
ECA240G1139 Erigeron canadensis HOM05D004800 ORTHO05D005842 8.5e-53 211.1 137 76.6
C07p42740 Brassica napus HOM05D004800 ORTHO05D005842 1.4e-52 210.3 242 50.0
CDE02G3876 Ceratophyllum demersum HOM05D004800 ORTHO05D005842 1.4e-52 210.3 200 58.5
CANSAT35G0701 Cannabis sativa HOM05D004800 ORTHO05D005842 3.2e-52 209.1 204 59.8
Aa31LG11G4300 Aethionema arabicum HOM05D004800 ORTHO05D005842 7.2e-52 208.0 202 53.5
BcaNung06718 Brassica carinata HOM05D004800 ORTHO05D005842 7.2e-52 208.0 206 54.4
BolC7t44804H Brassica oleracea HOM05D004800 ORTHO05D005842 7.2e-52 208.0 242 49.6
A09p06310 Brassica napus HOM05D004800 ORTHO05D005842 9.4e-52 207.6 214 55.1
AL6G36710 Arabidopsis lyrata HOM05D004800 ORTHO05D005842 2.1e-51 206.5 218 51.4
ATR0580G220 Amborella trichopoda HOM05D004800 ORTHO05D005842 7.9e-51 204.5 200 54.0
Thhalv10004902m.g Eutrema salsugineum HOM05D004800 ORTHO05D005842 3.0e-50 202.6 213 52.1
BolC9t53616H Brassica oleracea HOM05D004800 ORTHO05D005842 8.8e-50 201.1 204 54.9
Carub.0006s2291 Capsella rubella HOM05D004800 ORTHO05D005842 1.1e-49 200.7 199 52.8
HPP92_017174 Vanilla planifolia HOM05D004800 ORTHO05D005842 9.7e-49 197.6 205 50.2
arahy.Tifrunner.gnm1.ann1.D8NHAG Arachis hypogaea HOM05D004800 ORTHO05D005842 1.3e-48 197.2 197 55.8
CARHR188420 Cardamine hirsuta HOM05D004800 ORTHO05D005842 1.4e-47 193.7 218 50.0
Nn2g12411 Nelumbo nucifera HOM05D004800 ORTHO05D005842 1.2e-46 190.7 135 70.4
arahy.Tifrunner.gnm1.ann1.1BAV2G Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-44 184.1 197 52.8
SHI21074 Sapria himalayana HOM05D004800 ORTHO05D005842 8.8e-42 174.5 217 46.1
MBI14_g09103_MAGBIO Magnolia biondii HOM05D004800 ORTHO05D005842 1.5e-41 173.7 212 49.5
Potri.018G018100 Populus trichocarpa HOM05D004800 ORTHO05D005842 1.4e-39 167.2 124 71.0
Os08g0270200 Oryza sativa ssp. japonica HOM05D004800 ORTHO05D005842 2.4e-39 166.4 199 47.2
Peaxi162Scf01038g00137 Petunia axillaris HOM05D004800 ORTHO05D005842 1.2e-38 164.1 124 67.7
BcaB04g19808 Brassica carinata HOM05D004800 ORTHO05D005842 2.2e-37 159.8 203 49.8
Zm00001eb177850 Zea mays HOM05D004800 ORTHO05D005842 9.4e-36 154.5 199 46.7
unitig_26.g9784 Utricularia gibba HOM05D004800 ORTHO05D005842 8.8e-34 147.9 203 43.3
arahy.Tifrunner.gnm1.ann1.D9UBCD Arachis hypogaea HOM05D004800 ORTHO05D005842 1.1e-31 141.0 197 41.1
arahy.Tifrunner.gnm1.ann1.CUZL6Q Arachis hypogaea HOM05D004800 ORTHO05D005842 7.0e-31 138.3 197 40.6
arahy.Tifrunner.gnm1.ann1.N4WP0Z Arachis hypogaea HOM05D004800 ORTHO05D005842 7.0e-31 138.3 197 40.6
arahy.Tifrunner.gnm1.ann1.YE5PM3 Arachis hypogaea HOM05D004800 ORTHO05D005842 7.7e-30 134.8 197 39.6
Lj5g0013304 Lotus japonicus HOM05D004800 ORTHO05D005842 1.7e-29 133.7 201 40.8
Phvul.001G041300 Phaseolus vulgaris HOM05D004800 ORTHO05D005842 1.9e-28 130.2 207 39.1
Nitab4.5_0000617g0080 Nicotiana tabacum HOM05D004800 ORTHO05D005842 2.5e-28 129.8 82 79.3
VMungo0647G1387 Vigna mungo HOM05D004800 ORTHO05D005842 4.4e-25 119.0 207 39.1
Glyma.14G101700 Glycine max HOM05D004800 ORTHO05D005842 3.7e-24 115.9 201 36.8
SMO140G0030 Selaginella moellendorffii HOM05D004800 ORTHO05D005842 8.3e-24 114.8 184 37.5
Mapoly0130s0032 Marchantia polymorpha HOM05D004800 ORTHO05D005842 1.4e-23 114.0 185 33.0
Pp3c2_14120 Physcomitrium patens HOM05D004800 ORTHO05D005842 4.5e-22 109.0 180 36.1
AagrBONN_evm.TU.Sc2ySwM_368.3173 Anthoceros agrestis HOM05D004800 ORTHO05D005842 5.5e-20 102.1 178 33.7
TPR.G38911 Trifolium pratense HOM05D004800 ORTHO05D005842 2.1e-19 100.1 194 35.6
Psat6g026000 Pisum sativum HOM05D004800 ORTHO05D005842 3.0e-18 96.3 187 34.8
Sopen01g020190 Solanum pennellii HOM05D004800 ORTHO05D005842 1.5e-17 94.0 74 67.6
Sopen01g040360 Solanum pennellii HOM05D004800 ORTHO05D005842 4.4e-17 92.4 74 64.9
Sopen07g026310 Solanum pennellii HOM05D004800 ORTHO05D005842 4.4e-17 92.4 74 64.9
Medtr1g014130 Medicago truncatula HOM05D004800 ORTHO05D005842 7.5e-17 91.7 182 37.4
Sopen11g020420 Solanum pennellii HOM05D004800 ORTHO05D010331 4.9e-16 89.0 65 73.8
Sopen07g029020 Solanum pennellii HOM05D004800 ORTHO05D005842 1.8e-15 87.0 61 72.1
SEGI_18119 Sequoiadendron giganteum HOM05D004800 ORTHO05D005842 1.2e-14 84.3 95 42.1
CBR_g8579 Chara braunii HOM05D004800 ORTHO05D005842 3.5e-14 82.8 139 32.4
Sed0015580 Sechium edule HOM05D004800 ORTHO05D005842 1.5e-12 77.4 72 51.4
Lalb_Chr24g0401961 Lupinus albus HOM05D004800 ORTHO05D005842 1.9e-12 77.0 95 45.3
TPR.G28957 Trifolium pratense HOM05D000201 ORTHO05D000421 4.7e-11 72.4 50 70.0
Zm00001eb353150 Zea mays HOM05D004800 ORTHO05D005842 6.8e-10 68.6 127 40.2
arahy.Tifrunner.gnm1.ann1.Y76JQK Arachis hypogaea HOM05D004800 ORTHO05D005842 6.4e-08 62.0 188 28.7
Oeu042654.1 Olea europaea HOM05D004800 ORTHO05D005842 1.1e-07 61.2 94 44.7
MCO11G643 Micromonas commoda HOM05D004800 ORTHO05D005842 7.0e-07 58.5 154 26.0
TPR.G31499 Trifolium pratense HOM05D000201 ORTHO05D016113 9.2e-07 58.2 50 62.0


User provided reference genes

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