Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.7e-272 941.4 485 100.0
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 4.8e-253 877.5 473 96.8
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 6.6e-194 681.0 434 83.2
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.7e-186 656.4 434 78.3
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 1.4e-172 610.1 416 76.2
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 9.3e-164 580.9 447 70.2
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 3.5e-163 578.9 440 70.5
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 9.6e-161 570.9 433 70.9
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 4.0e-159 565.5 435 69.4
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.3e-157 560.5 442 68.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 6.0e-155 551.6 434 67.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 4.3e-153 545.4 432 65.5
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 3.7e-152 542.3 436 66.5
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.8e-151 540.0 435 66.2
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 3.4e-150 535.8 517 59.8
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 4.5e-150 535.4 440 65.2
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 3.8e-149 532.3 435 65.5
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 3.2e-148 529.3 365 75.3
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 4.2e-148 528.9 435 64.6
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 5.5e-148 528.5 437 64.5
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.2e-147 527.3 435 63.4
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 3.6e-147 525.8 429 64.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.8e-146 523.5 435 63.4
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 8.7e-146 521.2 429 63.4
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 1.1e-145 520.8 435 64.4
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 1.9e-145 520.0 435 64.8
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 4.3e-145 518.8 430 64.7
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 5.7e-145 518.5 435 63.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 4.8e-144 515.4 435 63.2
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 2.4e-143 513.1 436 64.0
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 3.1e-143 512.7 437 62.0
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 3.1e-143 512.7 435 63.2
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.0e-142 510.0 438 64.2
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 3.4e-142 509.2 435 62.1
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 4.5e-142 508.8 432 65.3
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.9e-142 508.4 432 65.0
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 8.5e-141 504.6 432 62.3
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 9.4e-140 501.1 438 61.6
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.2e-139 500.7 444 59.7
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 2.7e-139 499.6 431 65.2
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 2.7e-139 499.6 435 61.1
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.1e-139 498.4 435 60.9
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 6.1e-139 498.4 438 61.4
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 1.8e-138 496.9 437 60.9
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.9e-138 495.7 435 60.9
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 2.0e-137 493.4 391 68.0
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.7e-136 489.2 447 59.5
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 4.8e-136 488.8 437 61.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 1.8e-135 486.9 370 68.6
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 9.1e-135 484.6 434 60.4
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 5.0e-133 478.8 443 59.1
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 4.2e-132 475.7 444 60.1
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.5e-132 475.3 441 58.7
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 1.2e-131 474.2 439 58.5
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.3e-130 469.9 446 57.4
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.3e-128 464.2 431 63.3
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.7e-128 463.8 436 59.6
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 3.7e-128 462.6 438 57.8
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 8.2e-128 461.5 439 58.5
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 1.1e-127 461.1 439 57.2
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 2.0e-126 456.8 382 63.9
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 2.6e-126 456.4 437 57.2
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.5e-126 456.1 429 58.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 4.5e-126 455.7 440 58.0
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 2.2e-125 453.4 358 65.9
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 8.5e-125 451.4 436 56.9
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.5e-124 450.7 435 57.0
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 2.5e-124 449.9 435 56.1
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 3.2e-124 449.5 435 56.3
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 4.2e-124 449.1 435 56.6
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 4.2e-124 449.1 435 56.6
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.2e-123 447.6 435 57.0
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.7e-121 438.7 531 49.2
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 1.1e-119 434.5 479 54.1
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 7.0e-119 431.8 411 59.1
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.2e-115 421.0 379 59.1
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 3.6e-115 419.5 353 64.0
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 5.2e-114 415.6 415 55.7
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.2e-113 414.5 426 56.6
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 2.6e-113 413.3 400 58.0
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 3.4e-113 412.9 440 54.5
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.7e-112 410.6 435 54.7
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.4e-111 407.5 371 62.0
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 2.0e-110 403.7 376 57.2
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 1.3e-109 401.0 298 69.8
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 1.8e-106 390.6 449 50.1
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 3.0e-106 389.8 419 53.9
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 4.4e-105 386.0 401 54.6
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.8e-103 380.6 495 49.5
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 2.7e-102 376.7 353 60.3
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.7e-102 376.7 350 59.7
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 1.3e-101 374.4 356 56.7
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 2.9e-101 373.2 272 69.5
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 3.4e-97 359.8 460 46.7
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.3e-96 357.8 273 68.1
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 1.7e-96 357.5 393 52.9
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 7.8e-94 348.6 255 71.8
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 7.8e-94 348.6 455 45.1
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 2.0e-89 334.0 294 60.9
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 2.2e-88 330.5 437 47.4
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.4e-87 327.8 247 69.2
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 2.1e-86 323.9 315 56.2
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 6.6e-85 318.9 452 44.7
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.2e-83 314.7 304 56.6
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.8e-83 313.5 236 69.9
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 7.1e-79 298.9 218 67.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 6.6e-77 292.4 345 49.6
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 3.3e-76 290.0 242 63.2
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 5.6e-76 289.3 370 47.3
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 9.2e-71 271.9 305 54.4
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 6.0e-70 269.2 429 41.5
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 9.9e-65 251.9 487 38.4
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 4.9e-64 249.6 446 41.0
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.2e-63 246.9 289 50.5
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.5e-60 238.0 169 69.8
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.3e-60 236.5 300 47.3
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.9e-45 186.8 195 54.9
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.8e-42 177.9 141 66.0
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 2.9e-40 170.6 528 29.5
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.5e-39 167.5 160 56.9
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 3.3e-36 157.1 107 72.9
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 2.4e-34 151.0 537 31.1
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 2.6e-33 147.5 369 30.9
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 3.4e-33 147.1 154 52.6
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-32 144.4 166 53.0
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 2.2e-24 117.9 145 47.6
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 5.5e-23 113.2 161 41.6
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 4.7e-22 110.2 66 83.3
TPR.G3338 Trifolium pratense HOM05D004949 ORTHO05D006006 5.7e-20 103.2 133 46.6
ClCG10G001480 Citrullus lanatus HOM05D004949 ORTHO05D006006 8.2e-19 99.4 106 49.1
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 4.1e-18 97.1 121 46.3
Lj8A304G49 Lonicera japonica HOM05D004949 ORTHO05D006006 1.3e-16 92.0 86 57.0
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 1.2e-14 85.5 81 56.8
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.6e-14 84.0 75 57.3
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.6e-14 84.0 75 57.3
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.0e-14 82.8 75 56.0
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 2.3e-13 81.3 109 45.0
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.0e-13 80.9 75 57.3
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 2.6e-12 77.8 59 69.5
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 9.1e-10 69.3 73 50.7
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 1.6e-09 68.6 54 66.7
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 4.7e-06 57.0 32 78.1
Gohir.A12G128750 Gossypium hirsutum HOM05D004949 ORTHO05D006006 4.7e-06 57.0 44 59.1


User provided reference genes

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