Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020706 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 4.1e-157 558.1 305 100.0
Sabra01G0040400 Salix brachista HOM05D004124 ORTHO05D004779 2.0e-95 353.2 271 77.9
Dinv10949 Davidia involucrata HOM05D004124 ORTHO05D004779 3.4e-95 352.4 227 88.5
Rhsim12G0025300 Rhododendron simsii HOM05D004124 ORTHO05D004779 4.9e-94 348.6 227 88.1
GSVIVG01010495001 Vitis vinifera HOM05D004124 ORTHO05D004779 5.4e-93 345.1 232 85.8
Cc11_g16980 Coffea canephora HOM05D004124 ORTHO05D004779 1.6e-89 333.6 227 82.8
CANSAT01G0376 Cannabis sativa HOM05D004124 ORTHO05D004779 2.8e-89 332.8 229 83.8
Haze_12426 Corylus avellana HOM05D004124 ORTHO05D004779 1.4e-88 330.5 227 84.1
Potri.001G056000 Populus trichocarpa HOM05D004124 ORTHO05D004779 1.4e-88 330.5 229 84.3
COL.COLO4_20412 Corchorus olitorius HOM05D004124 ORTHO05D004779 2.3e-88 329.7 186 84.4
Nitab4.5_0003900g0010 Nicotiana tabacum HOM05D004124 ORTHO05D004779 3.1e-88 329.3 251 77.7
Manes.12G010400 Manihot esculenta HOM05D004124 ORTHO05D004779 1.2e-87 327.4 229 83.8
CSS0002767 Camellia sinensis var. sinensis HOM05D004124 ORTHO05D004779 1.7e-86 323.6 183 85.8
Duzib251G0523 Durio zibethinus HOM05D004124 ORTHO05D004779 2.2e-86 323.2 229 81.2
Duzib268G1736 Durio zibethinus HOM05D004124 ORTHO05D004779 3.8e-86 322.4 230 82.2
Glyma.11G251300 Glycine max HOM05D004124 ORTHO05D004779 1.1e-85 320.9 227 80.6
Glyma.18G005700 Glycine max HOM05D004124 ORTHO05D004779 1.9e-85 320.1 227 80.2
Ciclev10033913m.g Citrus clementina HOM05D004124 ORTHO05D004779 2.4e-85 319.7 230 81.3
Gohir.A04G140100 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.4e-85 319.7 229 80.3
arahy.Tifrunner.gnm1.ann1.JS6392 Arachis hypogaea HOM05D004124 ORTHO05D004779 3.2e-85 319.3 229 81.2
Atru.chr11.2334 Acer truncatum HOM05D004124 ORTHO05D004779 5.4e-85 318.5 228 81.6
Actinidia08066 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.4e-85 318.5 227 82.4
Gorai.012G176300 Gossypium raimondii HOM05D004124 ORTHO05D004779 9.2e-85 317.8 229 79.9
Phvul.001G262500 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 9.2e-85 317.8 227 80.6
VMungo1383G0738 Vigna mungo HOM05D004124 ORTHO05D004779 1.6e-84 317.0 231 78.8
Gohir.A03G125700 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.1e-84 316.6 234 79.1
Gohir.D04G183300 Gossypium hirsutum HOM05D004124 ORTHO05D004779 4.6e-84 315.5 231 79.7
Gorai.005G166600 Gossypium raimondii HOM05D004124 ORTHO05D004779 6.0e-84 315.1 234 78.2
vmacro01057 Vaccinium macrocarpon HOM05D004124 ORTHO05D004779 6.0e-84 315.1 317 63.1
CiPaw.06G103200 Carya illinoinensis HOM05D004124 ORTHO05D004779 3.0e-83 312.8 227 81.1
Sabra03G0126200 Salix brachista HOM05D004124 ORTHO05D004779 3.9e-83 312.4 228 80.7
arahy.Tifrunner.gnm1.ann1.B7Q2TL Arachis hypogaea HOM05D004124 ORTHO05D004779 1.1e-82 310.8 240 77.5
Potri.003G172500 Populus trichocarpa HOM05D004124 ORTHO05D004779 3.3e-82 309.3 228 80.7
TWI18G0339 Tripterygium wilfordii HOM05D004124 ORTHO05D004779 3.3e-82 309.3 229 79.0
Actinidia30642 Actinidia chinensis HOM05D004124 ORTHO05D004779 5.6e-82 308.5 227 80.2
CiPaw.05G108900 Carya illinoinensis HOM05D004124 ORTHO05D004779 7.3e-82 308.1 229 79.9
Eucgr.H04636 Eucalyptus grandis HOM05D004124 ORTHO05D004779 7.3e-82 308.1 229 79.0
RcHm_v2.0_Chr4g0430131 Rosa chinensis HOM05D004124 ORTHO05D004779 1.2e-81 307.4 229 78.2
Actinidia09646 Actinidia chinensis HOM05D004124 ORTHO05D004779 2.1e-81 306.6 229 79.5
Gohir.D02G148500 Gossypium hirsutum HOM05D004124 ORTHO05D004779 2.1e-81 306.6 236 77.1
Nitab4.5_0000861g0060 Nicotiana tabacum HOM05D004124 ORTHO05D004779 2.1e-81 306.6 227 79.3
QL03p052498 Quercus lobata HOM05D004124 ORTHO05D004779 8.1e-81 304.7 229 78.2
TAR626G1310 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.4e-80 303.9 184 77.7
MELO3C011859.2 Cucumis melo HOM05D004124 ORTHO05D004779 1.8e-80 303.5 229 77.3
CsaV3_5G030210 Cucumis sativus L. HOM05D004124 ORTHO05D004779 1.8e-80 303.5 229 77.3
FAN17G0270 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.0e-80 302.4 231 75.8
FAN07G1336 Fragaria x ananassa HOM05D004124 ORTHO05D004779 8.9e-80 301.2 231 75.3
PGR102G1761 Punica granatum HOM05D004124 ORTHO05D004779 2.0e-79 300.1 229 77.3
Prupe.1G225000 Prunus persica HOM05D004124 ORTHO05D004779 2.6e-79 299.7 165 85.5
PGSC0003DMG400034304 Solanum tuberosum HOM05D004124 ORTHO05D004779 2.6e-79 299.7 227 78.0
TAR383G0859 Trochodendron aralioides HOM05D004124 ORTHO05D004779 2.6e-79 299.7 229 76.4
AUR62005628 Chenopodium quinoa HOM05D004124 ORTHO05D004779 4.4e-79 298.9 230 79.6
FAN22G1987 Fragaria x ananassa HOM05D004124 ORTHO05D004779 4.4e-79 298.9 231 75.3
Sopen05g010890 Solanum pennellii HOM05D004124 ORTHO05D004779 4.4e-79 298.9 227 78.0
FAN12G0357 Fragaria x ananassa HOM05D004124 ORTHO05D004779 5.8e-79 298.5 231 75.3
Nn5g26967 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.8e-79 298.5 228 77.6
FvH4_4g23660 Fragaria vesca HOM05D004124 ORTHO05D004779 7.6e-79 298.1 229 76.0
Lj6A827G48 Lonicera japonica HOM05D004124 ORTHO05D004779 9.9e-79 297.7 171 80.7
Solyc05g015500.4 Solanum lycopersicum HOM05D004124 ORTHO05D004779 1.7e-78 297.0 227 77.5
Lj6g0002227 Lotus japonicus HOM05D004124 ORTHO05D004779 2.2e-78 296.6 229 76.9
Lj3A1069T45 Lonicera japonica HOM05D004124 ORTHO05D004779 2.9e-78 296.2 236 76.7
Nn8g41237 Nelumbo nucifera HOM05D004124 ORTHO05D004779 2.9e-78 296.2 229 75.5
Peaxi162Scf00128g01335 Petunia axillaris HOM05D004124 ORTHO05D004779 4.9e-78 295.4 227 77.5
CAN.G163.7 Capsicum annuum HOM05D004124 ORTHO05D004779 6.4e-78 295.0 231 77.5
Ca_16453_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 6.4e-78 295.0 229 75.5
MSTRG.8009 Avicennia marina HOM05D004124 ORTHO05D004779 1.1e-77 294.3 227 77.5
DCAR_024098 Daucus carota HOM05D004124 ORTHO05D004779 2.4e-77 293.1 230 75.7
Lalb_Chr11g0075781 Lupinus albus HOM05D004124 ORTHO05D004779 2.4e-77 293.1 183 73.2
MD16G1120200 Malus domestica HOM05D004124 ORTHO05D004779 3.2e-77 292.7 231 77.1
EL10Ac6g13513 Beta vulgaris HOM05D004124 ORTHO05D004779 7.1e-77 291.6 229 77.3
AUR62028920 Chenopodium quinoa HOM05D004124 ORTHO05D004779 1.6e-76 290.4 230 78.3
Migut.K00950 Erythranthe guttata HOM05D004124 ORTHO05D004779 2.1e-76 290.0 229 77.3
Hund06093 Selenicereus undatus HOM05D004124 ORTHO05D004779 1.0e-75 287.7 183 78.1
MSTRG.500 Avicennia marina HOM05D004124 ORTHO05D004779 3.0e-75 286.2 252 71.4
MBI13_g33572_MAGBIO Magnolia biondii HOM05D004124 ORTHO05D004779 3.0e-75 286.2 231 73.6
DCAR_026459 Daucus carota HOM05D004124 ORTHO05D004779 1.1e-74 284.3 185 71.9
Psat5g096680 Pisum sativum HOM05D004124 ORTHO05D004779 1.9e-74 283.5 230 73.0
Duzib248G0967 Durio zibethinus HOM05D004124 ORTHO05D004779 4.3e-74 282.3 229 75.5
Carub.0002s1361 Capsella rubella HOM05D004124 ORTHO05D004779 1.5e-71 273.9 185 71.4
Manes.13G011200 Manihot esculenta HOM05D004124 ORTHO05D004779 4.5e-71 272.3 232 71.6
Medtr3g085190 Medicago truncatula HOM05D004124 ORTHO05D004779 4.5e-71 272.3 229 70.3
PSO063G2768 Papaver somniferum HOM05D004124 ORTHO05D004779 5.8e-71 271.9 190 69.5
Sed0002251 Sechium edule HOM05D004124 ORTHO05D004779 1.3e-70 270.8 228 74.6
Aa31sc584G20 Aethionema arabicum HOM05D004124 ORTHO05D004779 1.7e-70 270.4 229 72.5
Thhalv10018870m.g Eutrema salsugineum HOM05D004124 ORTHO05D004779 1.7e-70 270.4 232 72.8
PSO170G5699 Papaver somniferum HOM05D004124 ORTHO05D004779 3.8e-70 269.2 190 68.9
AL2G25860 Arabidopsis lyrata HOM05D004124 ORTHO05D004779 6.4e-70 268.5 186 70.4
THA.LOC104825500 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 8.4e-70 268.1 183 70.5
Oeu006524.1 Olea europaea HOM05D004124 ORTHO05D004779 3.2e-69 266.2 185 73.0
THA.LOC104807133 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.1e-69 265.0 230 71.7
Hund25468 Selenicereus undatus HOM05D004124 ORTHO05D004779 2.7e-68 263.1 267 66.3
AT1G67325 Arabidopsis thaliana HOM05D004124 ORTHO05D004779 4.6e-68 262.3 186 69.4
ECA233G0726 Erigeron canadensis HOM05D004124 ORTHO05D004779 4.6e-68 262.3 227 70.9
Lalb_Chr07g0187111 Lupinus albus HOM05D004124 ORTHO05D004779 4.6e-68 262.3 229 69.9
Sp5g22270 Schrenkiella parvula HOM05D004124 ORTHO05D004779 4.6e-68 262.3 232 72.4
THA.LOC104807526 Tarenaya hassleriana HOM05D004124 ORTHO05D004779 7.9e-68 261.5 228 69.3
SGA_v2.0_scaffold391G50628 Striga asiatica HOM05D004124 ORTHO05D004779 1.3e-67 260.8 184 70.7
Lalb_Chr08g0230601 Lupinus albus HOM05D004124 ORTHO05D004779 1.8e-67 260.4 228 71.1
Thecc.02G206600 Theobroma cacao HOM05D004124 ORTHO05D004779 3.0e-67 259.6 154 81.8
CARHR059820 Cardamine hirsuta HOM05D004124 ORTHO05D004779 6.7e-67 258.5 183 69.4
TPR.G17791 Trifolium pratense HOM05D004124 ORTHO05D004779 6.7e-67 258.5 231 69.3
Lalb_Chr13g0294351 Lupinus albus HOM05D004124 ORTHO05D004779 1.1e-66 257.7 229 68.6
ECA234G0541 Erigeron canadensis HOM05D004124 ORTHO05D004779 1.9e-66 256.9 176 67.0
ATR0626G238 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.5e-66 256.5 231 70.1
Aqoxy7G02609 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 2.0e-63 246.9 233 69.1
HanXRQChr17g0569011 Helianthus annuus HOM05D004124 ORTHO05D004779 1.1e-61 241.1 181 64.1
BcaB03g15346 Brassica carinata HOM05D004124 ORTHO05D004779 3.5e-60 236.1 188 65.4
HPP92_015269 Vanilla planifolia HOM05D004124 ORTHO05D004779 3.9e-59 232.6 187 63.6
HanXRQChr12g0372641 Helianthus annuus HOM05D004124 ORTHO05D004779 8.7e-59 231.5 225 64.0
Eucgr.B03499 Eucalyptus grandis HOM05D004124 ORTHO05D004779 4.3e-58 229.2 227 65.2
Sed0008103 Sechium edule HOM05D004124 ORTHO05D004779 1.8e-56 223.8 175 64.6
Sc04g0010190 Simmondsia chinensis HOM05D004124 ORTHO05D004779 2.4e-56 223.4 229 67.2
Lsat_1_v5_gn_4_400 Lactuca sativa HOM05D004124 ORTHO05D004779 5.3e-56 222.2 169 71.0
C06p38790 Brassica napus HOM05D004124 ORTHO05D004779 1.0e-54 218.0 235 65.1
C06p42940 Brassica napus HOM05D004124 ORTHO05D004779 3.8e-54 216.1 235 64.7
BolC6t39143H Brassica oleracea HOM05D004124 ORTHO05D004779 6.5e-54 215.3 190 61.1
BolC6t38971H Brassica oleracea HOM05D004124 ORTHO05D004779 8.4e-54 214.9 235 64.7
A07p33920 Brassica napus HOM05D000660 ORTHO05D000766 1.4e-53 214.2 191 61.3
HanXRQChr12g0361221 Helianthus annuus HOM05D004124 ORTHO05D004779 1.4e-53 214.2 225 60.9
A07p32620 Brassica napus HOM05D004124 ORTHO05D004779 3.2e-53 213.0 236 64.4
BraA07t30886Z Brassica rapa HOM05D004124 ORTHO05D004779 3.2e-53 213.0 236 64.4
BraA07t31018Z Brassica rapa HOM05D000660 ORTHO05D000766 2.1e-52 210.3 191 60.7
Ah.03g136110 Amaranthus hybridus HOM05D004124 ORTHO05D004779 5.7e-50 202.2 170 62.9
unitig_749.g13306 Utricularia gibba HOM05D004124 ORTHO05D004779 2.1e-49 200.3 229 61.6
Oeu049141.1 Olea europaea HOM05D004124 ORTHO05D004779 6.3e-49 198.7 173 61.8
Cpa.g.sc43.62 Carica papaya HOM05D004124 ORTHO05D004779 9.0e-48 194.9 154 61.7
Zm00001eb174550 Zea mays HOM05D004124 ORTHO05D004779 7.6e-47 191.8 183 56.8
ClCG11G013590 Citrullus lanatus HOM05D004124 ORTHO05D004779 5.1e-43 179.1 229 57.2
CDE04G3109 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 7.4e-42 175.3 184 56.0
Zm00001eb035500 Zea mays HOM05D004124 ORTHO05D004779 2.2e-41 173.7 182 52.2
Lsat_1_v5_gn_5_94821 Lactuca sativa HOM05D004124 ORTHO05D004779 9.1e-40 168.3 230 59.6
Lsat_1_v5_gn_8_147801 Lactuca sativa HOM05D004124 ORTHO05D004779 3.2e-37 159.8 188 51.6
Os08g0521400 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.8e-33 146.7 192 46.4
AagrBONN_evm.TU.Sc2ySwM_340.309 Anthoceros agrestis HOM05D004124 ORTHO05D004779 6.1e-20 102.4 185 35.7
HanXRQChr08g0221261 Helianthus annuus HOM05D004124 ORTHO05D004779 5.2e-19 99.4 89 58.4
AagrBONN_evm.TU.Sc2ySwM_368.334 Anthoceros agrestis HOM05D004124 ORTHO05D004779 9.7e-18 95.1 182 35.2
HanXRQChr12g0379451 Helianthus annuus HOM05D004124 ORTHO05D004779 7.0e-16 89.0 52 75.0
Mapoly0005s0267 Marchantia polymorpha HOM05D004124 ORTHO05D004779 7.0e-16 89.0 116 43.1
Pp3c4_8110 Physcomitrium patens HOM05D004124 ORTHO05D004779 6.5e-14 82.4 167 35.9
Eucgr.L03169 Eucalyptus grandis HOM05D004124 ORTHO05D004779 5.5e-13 79.3 103 46.6
SMO200G0023 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.6e-12 77.8 190 33.7
CiPaw.14G021000 Carya illinoinensis HOM05D004124 ORTHO05D004779 1.8e-11 74.3 166 33.1
QL04p030567 Quercus lobata HOM05D004124 ORTHO05D004779 4.0e-11 73.2 169 33.1
CANSAT21G0875 Cannabis sativa HOM05D004124 ORTHO05D004779 1.3e-09 68.2 172 33.1
GSVIVG01018266001 Vitis vinifera HOM05D004124 ORTHO05D004779 1.3e-09 68.2 173 32.4
CDE06G1514 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.7e-09 66.6 183 33.3
CDE06G1866 Ceratophyllum demersum HOM05D004124 ORTHO05D004779 3.7e-09 66.6 153 34.6
PSO782G3756 Papaver somniferum HOM05D004124 ORTHO05D004779 3.7e-09 66.6 180 33.3
arahy.Tifrunner.gnm1.ann1.FNBZ5S Arachis hypogaea HOM05D004124 ORTHO05D004779 6.3e-09 65.9 174 32.8
SMO181G0003 Selaginella moellendorffii HOM05D004124 ORTHO05D004779 1.4e-08 64.7 37 70.3
arahy.Tifrunner.gnm1.ann1.4H3LGZ Arachis hypogaea HOM05D004124 ORTHO05D004779 1.8e-08 64.3 172 32.6
TAR375G0412 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.8e-08 64.3 195 28.7
ATR0057G076 Amborella trichopoda HOM05D004124 ORTHO05D004779 2.4e-08 63.9 51 51.0
Cfa011079 Carpinus fangiana HOM05D002637 ORTHO05D008095 3.1e-08 63.5 40 65.0
Haze_02835 Corylus avellana HOM05D004124 ORTHO05D004779 3.1e-08 63.5 40 65.0
BcaNung07398 Brassica carinata HOM05D004124 ORTHO05D004779 5.4e-08 62.8 40 60.0
Nn1g00866 Nelumbo nucifera HOM05D004124 ORTHO05D004779 5.4e-08 62.8 179 36.3
Zm00001eb105300 Zea mays HOM05D004124 ORTHO05D004779 5.4e-08 62.8 48 52.1
VMungo1383G0643 Vigna mungo HOM05D004124 ORTHO05D004779 7.0e-08 62.4 131 34.4
QL04p030562 Quercus lobata HOM05D004124 ORTHO05D000004 1.2e-07 61.6 45 55.6
TAR374G0532 Trochodendron aralioides HOM05D004124 ORTHO05D004779 1.6e-07 61.2 45 53.3
CiPaw.13G027200 Carya illinoinensis HOM05D002637 ORTHO05D008095 2.0e-07 60.8 45 53.3
Phvul.008G046200 Phaseolus vulgaris HOM05D004124 ORTHO05D004779 2.0e-07 60.8 45 51.1
Glyma.09G242400 Glycine max HOM05D004124 ORTHO05D004779 2.7e-07 60.5 44 56.8
Glyma.18G252600 Glycine max HOM05D004124 ORTHO05D004779 2.7e-07 60.5 60 46.7
Os07g0490600 Oryza sativa ssp. japonica HOM05D004124 ORTHO05D004779 2.7e-07 60.5 52 50.0
Actinidia20714 Actinidia chinensis HOM05D004124 ORTHO05D004779 4.5e-07 59.7 61 45.9
Aqoxy3G02746 Aquilegia oxysepala HOM05D004124 ORTHO05D004779 4.5e-07 59.7 162 30.9
Lj3g0004507 Lotus japonicus HOM05D004124 ORTHO05D004779 5.9e-07 59.3 67 41.8
CBR_g53713 Chara braunii HOM05D004124 ORTHO05D004779 7.7e-07 58.9 76 42.1
PSO063G6881 Papaver somniferum HOM05D004124 ORTHO05D004779 1.3e-06 58.2 47 46.8
Ca_14066_v3 Cicer arietinum L. HOM05D004124 ORTHO05D004779 1.7e-06 57.8 60 45.0
Psat7g021520 Pisum sativum HOM05D004124 ORTHO05D004779 6.5e-06 55.8 37 56.8
PGR083G0898 Punica granatum HOM05D004124 ORTHO05D004779 6.5e-06 55.8 45 55.6


User provided reference genes

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