Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 5.7e-256 887.1 459 100.0
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.3e-247 859.4 466 96.8
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 4.6e-181 638.3 483 71.6
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 1.8e-180 636.3 489 71.6
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 9.1e-177 624.0 474 70.0
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 9.4e-174 614.0 467 70.4
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 1.2e-173 613.6 498 67.1
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 3.9e-172 608.6 497 66.8
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.1e-171 607.1 472 67.8
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 4.1e-169 598.6 475 68.6
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 5.3e-169 598.2 469 66.5
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 1.0e-167 594.0 474 66.7
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 2.5e-166 589.3 467 66.4
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.2e-165 587.0 444 73.0
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 1.6e-165 586.6 473 66.2
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 4.7e-165 585.1 470 65.7
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 4.7e-165 585.1 470 65.7
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 6.1e-165 584.7 468 65.4
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 1.8e-164 583.2 467 67.2
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 4.0e-164 582.0 465 65.4
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 2.0e-163 579.7 507 63.1
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 5.7e-163 578.2 466 65.2
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 5.7e-163 578.2 468 65.2
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 2.8e-162 575.9 474 65.0
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 2.4e-161 572.8 465 65.6
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 4.1e-161 572.0 472 65.3
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 5.3e-161 571.6 466 65.2
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 5.3e-161 571.6 467 64.5
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 5.3e-161 571.6 467 66.0
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 7.0e-161 571.2 471 64.8
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 2.0e-160 569.7 463 64.8
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 1.0e-159 567.4 463 64.4
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 3.8e-159 565.5 487 63.0
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 5.0e-159 565.1 469 65.0
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.9e-158 563.1 469 65.5
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.5e-158 562.8 469 64.8
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 3.2e-158 562.4 475 63.4
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 2.7e-157 559.3 468 64.5
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 3.6e-157 558.9 467 64.0
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 1.0e-156 557.4 475 63.2
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 8.8e-156 554.3 467 64.2
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 3.4e-155 552.4 467 62.7
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 7.5e-155 551.2 469 63.3
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 1.7e-154 550.1 462 63.4
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.2e-154 549.7 485 61.2
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 6.3e-154 548.1 476 62.2
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 8.3e-154 547.7 467 62.3
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 5.4e-153 545.0 469 63.1
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 1.6e-152 543.5 472 63.1
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 5.9e-152 541.6 469 62.5
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 1.5e-150 537.0 470 62.1
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 1.9e-150 536.6 466 62.0
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 7.2e-150 534.6 466 62.7
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 1.2e-149 533.9 468 63.0
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.6e-149 533.5 462 62.8
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 2.1e-149 533.1 468 62.6
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 1.2e-147 527.3 466 60.7
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 1.5e-147 526.9 468 62.0
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 2.0e-147 526.6 469 62.0
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 3.7e-146 522.3 474 60.3
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.7e-146 522.3 465 60.2
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 1.1e-145 520.8 482 59.1
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 7.0e-145 518.1 465 61.5
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 9.2e-145 517.7 460 59.8
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 2.7e-144 516.2 466 59.9
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 7.8e-144 514.6 468 61.3
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 2.5e-142 509.6 490 58.0
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 1.2e-141 507.3 460 57.4
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 2.1e-141 506.5 419 65.4
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 1.0e-140 504.2 467 58.9
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 1.2e-139 500.7 463 57.5
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 3.4e-139 499.2 460 57.2
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 4.4e-139 498.8 460 57.2
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 1.7e-138 496.9 427 62.5
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 2.9e-138 496.1 460 56.5
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 2.9e-138 496.1 424 63.0
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 8.3e-138 494.6 463 56.8
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 1.1e-137 494.2 460 56.7
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 1.1e-137 494.2 460 56.1
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 1.8e-137 493.4 460 56.3
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 4.1e-137 492.3 468 57.5
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 2.0e-136 490.0 460 56.5
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 1.7e-135 486.9 433 62.1
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 4.3e-134 482.3 483 55.5
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 1.6e-133 480.3 466 56.2
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 3.7e-130 469.2 476 55.5
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 3.3e-126 456.1 373 64.1
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 4.3e-126 455.7 486 51.9
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 8.1e-125 451.4 324 74.1
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 8.1e-125 451.4 467 51.6
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 8.9e-124 448.0 467 51.6
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 1.7e-122 443.7 373 63.0
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 4.4e-115 419.1 466 52.4
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 9.9e-115 417.9 368 62.2
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 9.9e-115 417.9 459 49.0
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 6.4e-114 415.2 317 70.3
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 5.6e-110 402.1 481 46.4
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 7.3e-102 375.2 322 63.7
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 2.7e-96 356.7 327 58.7
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 2.3e-95 353.6 510 44.1
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 8.7e-95 351.7 353 56.7
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 9.3e-89 331.6 319 58.0
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 6.2e-85 318.9 359 51.5
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 8.4e-82 308.5 305 56.7
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.5e-75 287.7 342 48.0
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 2.0e-75 287.3 487 35.7
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 6.5e-74 282.3 219 65.8
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 1.3e-66 258.1 265 55.8
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 9.4e-65 251.9 434 38.0
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.3e-53 214.9 492 31.9
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 1.3e-53 214.9 351 40.5
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.1e-44 183.7 147 63.9
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 2.9e-42 177.2 197 51.8
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 6.1e-40 169.5 493 30.4
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 1.7e-37 161.4 370 37.3
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 5.2e-31 139.8 126 60.3
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 1.4e-28 131.7 507 26.6
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 5.9e-27 126.3 135 54.1
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 2.5e-25 120.9 85 69.4
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 2.0e-22 111.3 404 24.5
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 2.3e-18 97.8 100 53.0
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 1.5e-17 95.1 82 57.3
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 5.6e-17 93.2 102 52.9
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 7.3e-17 92.8 82 54.9
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 2.8e-16 90.9 83 56.6
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 3.6e-16 90.5 433 25.2
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 1.9e-12 78.2 85 51.8
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 4.6e-11 73.6 85 49.4


User provided reference genes

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