Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020618 Camellia sinensis var. sinensis HOM05D005301 ORTHO05D006433 3.0e-76 288.5 152 100.0
Dinv11108 Davidia involucrata HOM05D005301 ORTHO05D006433 5.7e-67 257.7 150 88.0
PGR083G1269 Punica granatum HOM05D005301 ORTHO05D006433 2.1e-66 255.8 150 86.0
Prupe.5G157400 Prunus persica HOM05D005301 ORTHO05D006433 6.3e-66 254.2 150 85.3
AT5G50310 Arabidopsis thaliana HOM05D005301 ORTHO05D006433 4.1e-65 251.5 150 84.7
Psat6g217880 Pisum sativum HOM05D005301 ORTHO05D006433 4.1e-65 251.5 150 84.0
Duzib205G0739 Durio zibethinus HOM05D005301 ORTHO05D006433 5.3e-65 251.1 150 84.0
CiPaw.11G012400 Carya illinoinensis HOM05D005301 ORTHO05D006433 9.0e-65 250.4 150 88.7
AL8G24360 Arabidopsis lyrata HOM05D005301 ORTHO05D006433 1.5e-64 249.6 150 84.7
Eucgr.L01339 Eucalyptus grandis HOM05D005301 ORTHO05D006433 1.5e-64 249.6 150 83.3
Aa31LG3G5920 Aethionema arabicum HOM05D005301 ORTHO05D006433 2.6e-64 248.8 150 84.7
arahy.Tifrunner.gnm1.ann1.11HRG0 Arachis hypogaea HOM05D005301 ORTHO05D006433 2.6e-64 248.8 150 84.0
QL10p005311 Quercus lobata HOM05D005301 ORTHO05D006433 3.4e-64 248.4 150 86.7
MD06G1157400 Malus domestica HOM05D005301 ORTHO05D006433 5.9e-64 247.7 150 85.3
MBI06_g16660_MAGBIO Magnolia biondii HOM05D005301 ORTHO05D006433 7.6e-64 247.3 150 87.3
Cc04_g10470 Coffea canephora HOM05D005301 ORTHO05D006433 1.0e-63 246.9 150 86.7
ECA232G2312 Erigeron canadensis HOM05D005301 ORTHO05D006433 2.9e-63 245.4 150 84.0
PSO782G4848 Papaver somniferum HOM05D005301 ORTHO05D006433 2.9e-63 245.4 150 85.3
Thecc.03G122400 Theobroma cacao HOM05D005301 ORTHO05D006433 2.9e-63 245.4 150 86.0
Haze_07279 Corylus avellana HOM05D005301 ORTHO05D006433 3.8e-63 245.0 150 86.0
Nitab4.5_0003282g0130 Nicotiana tabacum HOM05D005301 ORTHO05D006433 6.5e-63 244.2 150 86.7
PSO063G0990 Papaver somniferum HOM05D005301 ORTHO05D006433 1.1e-62 243.4 150 81.3
Medtr1g107265 Medicago truncatula HOM05D005301 ORTHO05D006433 3.2e-62 241.9 150 81.3
Nitab4.5_0010042g0030 Nicotiana tabacum HOM05D005301 ORTHO05D006433 3.2e-62 241.9 150 86.0
THA.LOC104825004 Tarenaya hassleriana HOM05D005301 ORTHO05D006433 3.2e-62 241.9 150 86.0
Cfa018895 Carpinus fangiana HOM05D005301 ORTHO05D006433 4.2e-62 241.5 147 85.7
Carub.0008s1035 Capsella rubella HOM05D005301 ORTHO05D006433 5.5e-62 241.1 150 85.3
Cpa.g.sc52.37 Carica papaya HOM05D005301 ORTHO05D006433 5.5e-62 241.1 150 85.3
Actinidia16194 Actinidia chinensis HOM05D005301 ORTHO05D006433 7.2e-62 240.7 150 85.3
CARHR258240 Cardamine hirsuta HOM05D005301 ORTHO05D006433 7.2e-62 240.7 150 86.7
RcHm_v2.0_Chr7g0191331 Rosa chinensis HOM05D005301 ORTHO05D006433 9.3e-62 240.4 150 82.0
Glyma.04G192600 Glycine max HOM05D005301 ORTHO05D006433 1.2e-61 240.0 150 84.0
Gohir.D12G190800 Gossypium hirsutum HOM05D005301 ORTHO05D006433 1.6e-61 239.6 150 83.3
Rhsim08G0184700 Rhododendron simsii HOM05D005301 ORTHO05D006433 1.6e-61 239.6 150 84.7
CDE02G1357 Ceratophyllum demersum HOM05D005301 ORTHO05D006433 2.1e-61 239.2 150 82.0
CAN.G352.5 Capsicum annuum HOM05D005301 ORTHO05D006433 2.7e-61 238.8 150 85.3
PGSC0003DMG400015238 Solanum tuberosum HOM05D005301 ORTHO05D006433 2.7e-61 238.8 150 86.0
Ca_16092_v3 Cicer arietinum L. HOM05D005301 ORTHO05D006433 3.6e-61 238.4 136 86.0
Gorai.008G204700 Gossypium raimondii HOM05D005301 ORTHO05D006433 3.6e-61 238.4 150 82.7
CANSAT80G2324 Cannabis sativa HOM05D005301 ORTHO05D006433 7.9e-61 237.3 150 83.3
Migut.I00257 Erythranthe guttata HOM05D005301 ORTHO05D006433 7.9e-61 237.3 150 84.0
Lsat_1_v5_gn_4_78900 Lactuca sativa HOM05D005301 ORTHO05D006433 7.9e-61 237.3 150 82.0
Ciclev10019136m.g Citrus clementina HOM05D005301 ORTHO05D006433 1.0e-60 236.9 150 83.3
Gohir.A12G188000 Gossypium hirsutum HOM05D005301 ORTHO05D006433 1.8e-60 236.1 150 82.7
Sp6g12390 Schrenkiella parvula HOM05D005301 ORTHO05D006433 2.3e-60 235.7 150 84.0
Solyc03g111390.4 Solanum lycopersicum HOM05D005301 ORTHO05D006433 3.0e-60 235.3 150 84.0
Sopen03g030520 Solanum pennellii HOM05D005301 ORTHO05D006433 3.0e-60 235.3 150 84.0
BcaB01g02903 Brassica carinata HOM05D005301 ORTHO05D006433 5.1e-60 234.6 140 84.3
Thhalv10012907m.g Eutrema salsugineum HOM05D005301 ORTHO05D006433 5.1e-60 234.6 150 83.3
Glyma.06G173200 Glycine max HOM05D005301 ORTHO05D006433 6.7e-60 234.2 150 82.0
Sed0013046 Sechium edule HOM05D005301 ORTHO05D006433 8.7e-60 233.8 150 83.3
HanXRQChr09g0272861 Helianthus annuus HOM05D005301 ORTHO05D006433 1.5e-59 233.0 150 82.0
Lalb_Chr11g0069731 Lupinus albus HOM05D005301 ORTHO05D006433 1.5e-59 233.0 150 81.3
Peaxi162Scf00089g00721 Petunia axillaris HOM05D005301 ORTHO05D006433 1.5e-59 233.0 150 83.3
ClCG06G017670 Citrullus lanatus HOM05D005301 ORTHO05D006433 1.9e-59 232.6 150 83.3
CsaV3_1G000790 Cucumis sativus L. HOM05D005301 ORTHO05D006433 1.9e-59 232.6 150 83.3
MD14G1164000 Malus domestica HOM05D005301 ORTHO05D006433 3.3e-59 231.9 150 82.0
BolC3t15670H Brassica oleracea HOM05D005301 ORTHO05D006433 5.7e-59 231.1 150 82.7
Sc22g0004050 Simmondsia chinensis HOM05D005301 ORTHO05D006433 5.7e-59 231.1 150 82.0
Aqoxy5G03589 Aquilegia oxysepala HOM05D005301 ORTHO05D006433 7.4e-59 230.7 150 82.0
FvH4_5g07300 Fragaria vesca HOM05D005301 ORTHO05D006433 9.7e-59 230.3 150 82.7
COL.COLO4_09264 Corchorus olitorius HOM05D005301 ORTHO05D006433 1.3e-58 229.9 150 81.3
TWI39G1189 Tripterygium wilfordii HOM05D005301 ORTHO05D006433 3.7e-58 228.4 150 82.0
Oeu011576.1 Olea europaea HOM05D005301 ORTHO05D006433 4.8e-58 228.0 150 80.7
BcaC01g04820 Brassica carinata HOM05D005301 ORTHO05D006433 8.2e-58 227.3 150 81.3
FAN18G2536 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.1e-57 226.9 150 81.3
TAR374G1436 Trochodendron aralioides HOM05D005301 ORTHO05D006433 1.1e-57 226.9 150 80.0
GSVIVG01007548001 Vitis vinifera HOM05D005301 ORTHO05D006433 1.4e-57 226.5 150 80.0
MELO3C026231.2 Cucumis melo HOM05D005301 ORTHO05D006433 4.1e-57 224.9 159 78.6
Nn4g22465 Nelumbo nucifera HOM05D005301 ORTHO05D006433 4.1e-57 224.9 150 80.7
FAN04G2720 Fragaria x ananassa HOM05D005301 ORTHO05D006433 6.9e-57 224.2 155 80.0
Phvul.009G169100 Phaseolus vulgaris HOM05D005301 ORTHO05D006433 5.9e-56 221.1 150 78.0
SalBow4G2023 Salvia bowleyana HOM05D005301 ORTHO05D006433 5.9e-56 221.1 150 77.3
Os04g0483600 Oryza sativa ssp. japonica HOM05D005301 ORTHO05D006433 7.7e-56 220.7 150 77.3
Atru.chr9.1005 Acer truncatum HOM05D005301 ORTHO05D006433 1.0e-55 220.3 150 79.3
Potri.015G090100 Populus trichocarpa HOM05D005301 ORTHO05D006433 2.9e-55 218.8 150 78.7
Lj1g0016804 Lotus japonicus HOM05D005301 ORTHO05D006433 3.8e-55 218.4 150 76.7
SGA_v2.0_scaffold102G29851 Striga asiatica HOM05D005301 ORTHO05D006433 6.5e-55 217.6 141 80.9
EL10Ac7g18070 Beta vulgaris HOM05D005301 ORTHO05D006433 8.5e-55 217.2 150 78.0
Ah.08g218140 Amaranthus hybridus HOM05D005301 ORTHO05D006433 1.4e-54 216.5 150 78.0
Pp3c16_5780 Physcomitrium patens HOM05D005301 ORTHO05D006433 1.4e-54 216.5 150 72.7
Sabra15G0112300 Salix brachista HOM05D005301 ORTHO05D006433 2.5e-54 215.7 117 88.0
FAN13G0064 Fragaria x ananassa HOM05D005301 ORTHO05D006433 3.2e-54 215.3 178 69.7
vmacro19243 Vaccinium macrocarpon HOM05D005301 ORTHO05D006433 6.1e-53 211.1 230 56.5
AUR62001274 Chenopodium quinoa HOM05D005301 ORTHO05D006433 1.0e-52 210.3 150 77.3
HPP92_004584 Vanilla planifolia HOM05D005301 ORTHO05D006433 2.3e-52 209.1 150 75.3
SMO339G0058 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.9e-52 208.4 148 69.6
A03p27760 Brassica napus HOM05D005301 ORTHO05D006433 6.7e-52 207.6 150 76.7
C03p33480 Brassica napus HOM05D005301 ORTHO05D006433 6.7e-52 207.6 146 76.7
BraA03t11987Z Brassica rapa HOM05D005301 ORTHO05D006433 6.7e-52 207.6 150 76.7
AagrBONN_evm.TU.Sc2ySwM_344.1825 Anthoceros agrestis HOM05D005301 ORTHO05D006433 7.4e-51 204.1 150 68.0
Mapoly0001s0540 Marchantia polymorpha HOM05D005301 ORTHO05D006433 1.2e-48 196.8 150 68.7
FAN08G2537 Fragaria x ananassa HOM05D005301 ORTHO05D006433 1.5e-48 196.4 125 84.8
CBR_g40809 Chara braunii HOM05D005301 ORTHO05D006433 4.5e-48 194.9 152 67.8
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 2.5e-46 189.1 107 81.3
Hund05643 Selenicereus undatus HOM05D005301 ORTHO05D006433 9.4e-46 187.2 150 71.3
AUR62025732 Chenopodium quinoa HOM05D005301 ORTHO05D006433 2.7e-45 185.7 107 82.2
Manes.06G114900 Manihot esculenta HOM05D005301 ORTHO05D006433 4.1e-33 145.2 77 88.3
Eucgr.B00150 Eucalyptus grandis HOM05D005301 ORTHO05D006433 4.5e-32 141.7 77 84.4
Eucgr.B00154 Eucalyptus grandis HOM05D005301 ORTHO05D006433 3.6e-29 132.1 78 79.5
SEGI_22253 Sequoiadendron giganteum HOM05D005301 ORTHO05D006433 4.0e-28 128.6 75 77.3
QL04p021669 Quercus lobata HOM05D005301 ORTHO05D006433 6.8e-28 127.9 77 80.5
Lj9A475G63 Lonicera japonica HOM05D005301 ORTHO05D006433 2.0e-27 126.3 110 60.0
PRCOL_00006105 Prasinoderma coloniale HOM05D005301 ORTHO05D006433 1.1e-25 120.6 117 53.0
SMO200G0172 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 9.1e-25 117.5 131 51.1
MCO16G658 Micromonas commoda HOM05D005301 ORTHO05D006433 3.5e-24 115.5 157 43.9
Cre09.g398200 Chlamydomonas reinhardtii HOM05D005301 ORTHO05D006433 1.2e-19 100.5 148 48.0
Hma1.2p1_0941F.1_g239720 Hydrangea macrophylla HOM05D005301 ORTHO05D006433 9.8e-19 97.4 63 76.2
Hma1.2p1_3384F.1_g335740 Hydrangea macrophylla HOM05D005301 ORTHO05D006433 3.7e-18 95.5 46 91.3
BcaC01g04819 Brassica carinata HOM05D005301 ORTHO05D006433 8.3e-18 94.4 144 49.3
SMO200G0119 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 3.6e-13 79.0 131 37.4
SMO024G0003 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 1.5e-11 73.6 38 76.3
CAN.G352.12 Capsicum annuum HOM05D005301 ORTHO05D006433 5.9e-08 61.6 61 49.2
SMO089G0014 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 6.6e-07 58.2 35 68.6
SMO200G0165 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 6.6e-07 58.2 31 71.0
SMO200G0253 Selaginella moellendorffii HOM05D005301 ORTHO05D006433 6.6e-07 58.2 35 68.6
Lsat_1_v5_gn_0_20160 Lactuca sativa HOM05D003043 ORTHO05D003652 1.1e-06 57.4 40 65.0


User provided reference genes

Program Settings