Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020585 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 2.4e-44 181.8 93 100.0
Dinv26882 Davidia involucrata HOM05D003477 ORTHO05D004043 6.4e-29 130.6 92 79.3
Actinidia16453 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.5e-27 124.8 95 73.7
Actinidia21247 Actinidia chinensis HOM05D003477 ORTHO05D004043 3.5e-27 124.8 95 73.7
Cc07_g06600 Coffea canephora HOM05D003477 ORTHO05D004043 8.9e-23 110.2 96 68.8
ECA238G3264 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.5e-22 109.4 96 64.6
Atru.chr3.235 Acer truncatum HOM05D003477 ORTHO05D004043 2.0e-22 109.0 89 64.0
DCAR_025766 Daucus carota HOM05D003477 ORTHO05D004043 2.6e-22 108.6 93 68.8
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.6e-22 108.6 93 69.9
Actinidia03815 Actinidia chinensis HOM05D003477 ORTHO05D004043 4.4e-22 107.8 82 74.4
TAR381G0852 Trochodendron aralioides HOM05D003477 ORTHO05D004043 4.4e-22 107.8 91 67.0
Actinidia08244 Actinidia chinensis HOM05D003477 ORTHO05D004043 7.6e-22 107.1 84 72.6
Lsat_1_v5_gn_2_85381 Lactuca sativa HOM05D003477 ORTHO05D004043 9.9e-22 106.7 99 62.6
VMungo0720G2427 Vigna mungo HOM05D003477 ORTHO05D004043 4.1e-20 101.3 93 63.4
Nn1g04659 Nelumbo nucifera HOM05D003477 ORTHO05D004043 7.1e-20 100.5 93 62.4
QL06p040030 Quercus lobata HOM05D003477 ORTHO05D004043 9.2e-20 100.1 95 64.2
Eucgr.H02262 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.6e-19 99.4 93 61.3
TAR376G0403 Trochodendron aralioides HOM05D003477 ORTHO05D004043 7.8e-19 97.1 93 64.5
Glyma.01G190500 Glycine max HOM05D003477 ORTHO05D004043 1.0e-18 96.7 93 58.1
CiPaw.05G013300 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.3e-18 96.3 95 61.1
Prupe.6G226300 Prunus persica HOM05D003477 ORTHO05D004043 1.7e-18 95.9 93 60.2
Phvul.007G041500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 2.3e-18 95.5 92 59.8
SGA_v2.0_scaffold32G13034 Striga asiatica HOM05D003477 ORTHO05D004043 2.3e-18 95.5 94 60.6
Aqoxy6G02834 Aquilegia oxysepala HOM05D003477 ORTHO05D004043 3.0e-18 95.1 97 61.9
Dinv15774 Davidia involucrata HOM05D003477 ORTHO05D004043 3.0e-18 95.1 92 62.0
ClCG05G010360 Citrullus lanatus HOM05D003477 ORTHO05D004043 3.9e-18 94.7 95 58.9
Phvul.002G014500 Phaseolus vulgaris HOM05D003477 ORTHO05D004043 6.6e-18 94.0 94 59.6
arahy.Tifrunner.gnm1.ann1.VE84TY Arachis hypogaea HOM05D003477 ORTHO05D004043 1.1e-17 93.2 92 58.7
Nn5g30458 Nelumbo nucifera HOM05D003477 ORTHO05D004043 1.1e-17 93.2 94 60.6
Solyc02g092830.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 1.1e-17 93.2 93 61.3
PGSC0003DMG400024979 Solanum tuberosum HOM05D003477 ORTHO05D004043 1.1e-17 93.2 93 61.3
Sopen02g037390 Solanum pennellii HOM05D003477 ORTHO05D004043 1.5e-17 92.8 93 61.3
RcHm_v2.0_Chr2g0107061 Rosa chinensis HOM05D003477 ORTHO05D004043 1.9e-17 92.4 96 60.4
arahy.Tifrunner.gnm1.ann1.K085P0 Arachis hypogaea HOM05D003477 ORTHO05D004043 4.3e-17 91.3 93 59.1
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 5.6e-17 90.9 93 53.8
PSO210G4486 Papaver somniferum HOM05D003477 ORTHO05D004043 5.6e-17 90.9 98 57.1
FvH4_1g16960 Fragaria vesca HOM05D003477 ORTHO05D004043 7.3e-17 90.5 96 60.4
Peaxi162Scf00945g00014 Petunia axillaris HOM05D003477 ORTHO05D004043 9.6e-17 90.1 93 58.1
MELO3C018498.2 Cucumis melo HOM05D003477 ORTHO05D004043 1.2e-16 89.7 92 53.3
Nitab4.5_0001439g0010 Nicotiana tabacum HOM05D003477 ORTHO05D004043 1.2e-16 89.7 93 58.1
arahy.Tifrunner.gnm1.ann1.T63M72 Arachis hypogaea HOM05D003477 ORTHO05D004043 1.6e-16 89.4 90 57.8
MBI04_g11440_MAGBIO Magnolia biondii HOM05D003477 ORTHO05D004043 2.1e-16 89.0 93 58.1
arahy.Tifrunner.gnm1.ann1.S3TCSS Arachis hypogaea HOM05D003477 ORTHO05D004043 2.8e-16 88.6 93 58.1
SGA_v2.0_scaffold225G42992 Striga asiatica HOM05D003477 ORTHO05D004043 2.8e-16 88.6 94 56.4
Prupe.8G137400 Prunus persica HOM05D003477 ORTHO05D004043 3.6e-16 88.2 93 59.1
Ciclev10027007m.g Citrus clementina HOM05D003477 ORTHO05D004043 4.7e-16 87.8 93 52.7
Thhalv10022939m.g Eutrema salsugineum HOM05D003477 ORTHO05D004043 4.7e-16 87.8 95 54.7
Lj2g0006602 Lotus japonicus HOM05D003477 ORTHO05D004043 4.7e-16 87.8 93 58.1
Carub.0003s2895 Capsella rubella HOM05D003477 ORTHO05D004043 6.2e-16 87.4 95 55.8
ClCG02G006540 Citrullus lanatus HOM05D003477 ORTHO05D004043 6.2e-16 87.4 93 54.8
Lalb_Chr05g0226121 Lupinus albus HOM05D003477 ORTHO05D004043 8.1e-16 87.0 93 54.8
Nitab4.5_0001119g0150 Nicotiana tabacum HOM05D003477 ORTHO05D004043 8.1e-16 87.0 93 58.1
vmacro19455 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 8.1e-16 87.0 94 59.6
CiPaw.01G009400 Carya illinoinensis HOM05D003477 ORTHO05D004043 1.1e-15 86.7 96 55.2
FAN26G2600 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.1e-15 86.7 93 60.2
FAN19G2238 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.4e-15 86.3 93 60.2
Sed0015852 Sechium edule HOM05D003477 ORTHO05D004043 1.4e-15 86.3 94 58.5
Migut.B00399 Erythranthe guttata HOM05D003477 ORTHO05D004043 1.8e-15 85.9 93 58.1
PSO675G8803 Papaver somniferum HOM05D003477 ORTHO05D004043 1.8e-15 85.9 95 57.9
Cc02_g19410 Coffea canephora HOM05D003477 ORTHO05D004043 3.1e-15 85.1 93 55.9
FAN23G2670 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.1e-15 85.1 93 58.1
QL11p032673 Quercus lobata HOM05D003477 ORTHO05D004043 3.1e-15 85.1 94 61.7
TWI31G0442 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 3.1e-15 85.1 94 57.4
AUR62003947 Chenopodium quinoa HOM05D003477 ORTHO05D004043 4.0e-15 84.7 92 51.1
MD02G1179900 Malus domestica HOM05D003477 ORTHO05D004043 4.0e-15 84.7 96 59.4
Actinidia00402 Actinidia chinensis HOM05D003477 ORTHO05D004043 5.2e-15 84.3 93 60.2
AUR62038261 Chenopodium quinoa HOM05D003477 ORTHO05D004043 5.2e-15 84.3 92 51.1
CsaV3_3G018130 Cucumis sativus L. HOM05D003477 ORTHO05D004043 5.2e-15 84.3 96 59.4
Solyc01g107450.4 Solanum lycopersicum HOM05D003477 ORTHO05D004043 5.2e-15 84.3 91 52.7
Duzib052G0507 Durio zibethinus HOM05D003477 ORTHO05D004043 6.8e-15 84.0 94 55.3
PSO541G5514 Papaver somniferum HOM05D003477 ORTHO05D004043 6.8e-15 84.0 95 56.8
PGSC0003DMG400025859 Solanum tuberosum HOM05D003477 ORTHO05D004043 6.8e-15 84.0 92 52.2
vmacro01991 Vaccinium macrocarpon HOM05D003477 ORTHO05D004043 8.9e-15 83.6 93 59.1
CsaV3_7G008070 Cucumis sativus L. HOM05D010572 ORTHO05D012753 1.2e-14 83.2 96 52.1
Lalb_Chr02g0145231 Lupinus albus HOM05D003477 ORTHO05D004043 1.2e-14 83.2 92 56.5
Lj5g0009419 Lotus japonicus HOM05D003477 ORTHO05D004043 1.5e-14 82.8 92 54.3
Sed0021400 Sechium edule HOM05D003477 ORTHO05D004043 1.5e-14 82.8 95 51.6
CAN.G606.19 Capsicum annuum HOM05D003477 ORTHO05D004043 2.0e-14 82.4 87 52.9
Duzib132G0501 Durio zibethinus HOM05D003477 ORTHO05D004043 2.0e-14 82.4 93 55.9
Duzib248G0529 Durio zibethinus HOM05D003477 ORTHO05D004043 2.0e-14 82.4 93 55.9
FAN28G0243 Fragaria x ananassa HOM05D003477 ORTHO05D004043 2.0e-14 82.4 96 57.3
Hma1.2p1_1023F.1_g249010 Hydrangea macrophylla HOM05D003477 ORTHO05D004043 2.0e-14 82.4 92 63.0
Rhsim05G0089200 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.0e-14 82.4 90 60.0
Thecc.02G111100 Theobroma cacao HOM05D003477 ORTHO05D004043 2.0e-14 82.4 93 54.8
TWI79G1417 Tripterygium wilfordii HOM05D003477 ORTHO05D004043 2.0e-14 82.4 93 55.9
Actinidia34393 Actinidia chinensis HOM05D003477 ORTHO05D004043 2.6e-14 82.0 94 59.6
CANSAT25G3186 Cannabis sativa HOM05D003477 ORTHO05D004043 2.6e-14 82.0 93 60.2
Gorai.005G234400 Gossypium raimondii HOM05D003477 ORTHO05D004043 2.6e-14 82.0 94 55.3
MD10G1099700 Malus domestica HOM05D003477 ORTHO05D004043 2.6e-14 82.0 96 55.2
Hund16371 Selenicereus undatus HOM05D003477 ORTHO05D004043 2.6e-14 82.0 99 52.5
Sopen01g049690 Solanum pennellii HOM05D003477 ORTHO05D004043 2.6e-14 82.0 91 51.6
Gohir.A03G185500 Gossypium hirsutum HOM05D003477 ORTHO05D004043 3.4e-14 81.6 93 55.9
SalBow6G1705 Salvia bowleyana HOM05D003477 ORTHO05D004043 3.4e-14 81.6 95 56.8
CSS0007946 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.4e-14 81.3 92 58.7
CSS0046932 Camellia sinensis var. sinensis HOM05D003477 ORTHO05D004043 4.4e-14 81.3 92 58.7
CDE01G0745 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 4.4e-14 81.3 92 51.1
Duzib248G0862 Durio zibethinus HOM05D003477 ORTHO05D004043 4.4e-14 81.3 91 56.0
Sed0009886 Sechium edule HOM05D003477 ORTHO05D004043 4.4e-14 81.3 93 49.5
Dinv42204 Davidia involucrata HOM05D003477 ORTHO05D004043 5.8e-14 80.9 91 60.4
Rhsim11G0157900 Rhododendron simsii HOM05D003477 ORTHO05D004043 5.8e-14 80.9 92 58.7
CARHR105430 Cardamine hirsuta HOM05D003477 ORTHO05D004043 7.6e-14 80.5 94 52.1
CDE02G3617 Ceratophyllum demersum HOM05D003477 ORTHO05D004043 7.6e-14 80.5 92 54.3
Manes.07G066700 Manihot esculenta HOM05D003477 ORTHO05D004043 7.6e-14 80.5 95 52.6
Gohir.D02G206836 Gossypium hirsutum HOM05D003477 ORTHO05D004043 9.9e-14 80.1 93 54.8
Gorai.008G021900 Gossypium raimondii HOM05D003477 ORTHO05D004043 9.9e-14 80.1 94 52.1
Psat6g216680 Pisum sativum HOM05D003477 ORTHO05D004043 1.3e-13 79.7 95 55.8
EL10Ac6g15680 Beta vulgaris HOM05D003477 ORTHO05D004043 1.7e-13 79.3 93 48.4
Gohir.D12G021600 Gossypium hirsutum HOM05D003477 ORTHO05D004043 1.7e-13 79.3 93 52.7
Lsat_1_v5_gn_9_111940 Lactuca sativa HOM05D003477 ORTHO05D004043 1.7e-13 79.3 93 53.8
Medtr5g016330 Medicago truncatula HOM05D003477 ORTHO05D004043 1.7e-13 79.3 92 51.1
Psat2g169360 Pisum sativum HOM05D003477 ORTHO05D004043 1.7e-13 79.3 95 51.6
Ca_11060_v3 Cicer arietinum L. HOM05D003477 ORTHO05D004043 2.2e-13 79.0 94 55.3
Lalb_Chr21g0308261 Lupinus albus HOM05D003477 ORTHO05D004043 2.2e-13 79.0 92 53.3
Rhsim11G0156400 Rhododendron simsii HOM05D003477 ORTHO05D004043 2.2e-13 79.0 92 57.6
Glyma.20G130500 Glycine max HOM05D003477 ORTHO05D004043 2.9e-13 78.6 93 57.0
Medtr1g107085 Medicago truncatula HOM05D003477 ORTHO05D004043 2.9e-13 78.6 95 54.7
Sc16g0001450 Simmondsia chinensis HOM05D003477 ORTHO05D004043 2.9e-13 78.6 94 50.0
PSO675G3465 Papaver somniferum HOM05D003477 ORTHO05D004043 3.8e-13 78.2 93 54.8
Haze_10200 Corylus avellana HOM05D003477 ORTHO05D004043 1.4e-12 76.3 94 54.3
Eucgr.I01090 Eucalyptus grandis HOM05D003477 ORTHO05D004043 1.4e-12 76.3 97 53.6
SalBow3G1026 Salvia bowleyana HOM05D003477 ORTHO05D004043 1.4e-12 76.3 95 53.7
Aa31LG2G16840 Aethionema arabicum HOM05D003477 ORTHO05D004043 1.9e-12 75.9 94 54.3
Potri.001G298800 Populus trichocarpa HOM05D003477 ORTHO05D004043 1.9e-12 75.9 95 55.8
Manes.10G075200 Manihot esculenta HOM05D003477 ORTHO05D004043 2.4e-12 75.5 95 50.5
A03p45360 Brassica napus HOM05D003477 ORTHO05D004043 4.2e-12 74.7 94 50.0
BraA03t13668Z Brassica rapa HOM05D003477 ORTHO05D004043 4.2e-12 74.7 94 50.0
Glyma.18G192300 Glycine max HOM05D003477 ORTHO05D004043 4.2e-12 74.7 93 50.5
Oeu013760.1 Olea europaea HOM05D003477 ORTHO05D004043 5.4e-12 74.3 95 54.7
Gohir.A12G021300 Gossypium hirsutum HOM05D003477 ORTHO05D004043 7.1e-12 73.9 93 49.5
GSVIVG01037899001 Vitis vinifera HOM05D003477 ORTHO05D004043 1.2e-11 73.2 80 52.5
Carub.0007s0610 Capsella rubella HOM05D003477 ORTHO05D004043 1.6e-11 72.8 92 50.0
HanXRQChr03g0068771 Helianthus annuus HOM05D003477 ORTHO05D004043 1.6e-11 72.8 92 53.3
DCAR_029094 Daucus carota HOM05D003477 ORTHO05D004043 2.1e-11 72.4 93 51.6
Sed0004332 Sechium edule HOM05D003477 ORTHO05D004043 2.1e-11 72.4 88 54.5
ATR0315G039 Amborella trichopoda HOM05D003477 ORTHO05D004043 7.8e-11 70.5 93 48.4
Cfa004078 Carpinus fangiana HOM05D003477 ORTHO05D004043 7.8e-11 70.5 99 50.5
Peaxi162Scf00152g00313 Petunia axillaris HOM05D003477 ORTHO05D004043 1.0e-10 70.1 80 53.8
DCAR_001659 Daucus carota HOM05D003477 ORTHO05D004043 1.3e-10 69.7 94 52.1
ECA240G1244 Erigeron canadensis HOM05D003477 ORTHO05D004043 1.7e-10 69.3 92 52.2
PSO675G6764 Papaver somniferum HOM05D003477 ORTHO05D004043 2.3e-10 68.9 93 49.5
Nitab4.5_0003699g0030 Nicotiana tabacum HOM05D003477 ORTHO05D004043 3.0e-10 68.6 92 52.2
FAN27G0803 Fragaria x ananassa HOM05D003477 ORTHO05D004043 3.9e-10 68.2 87 51.7
RcHm_v2.0_Chr6g0254531 Rosa chinensis HOM05D003477 ORTHO05D004043 3.9e-10 68.2 88 54.5
BcaC01g03076 Brassica carinata HOM05D003477 ORTHO05D004043 6.6e-10 67.4 72 52.8
FAN15G1392 Fragaria x ananassa HOM05D003477 ORTHO05D004043 6.6e-10 67.4 87 50.6
Sabra16G0187400 Salix brachista HOM05D003477 ORTHO05D004043 6.6e-10 67.4 93 49.5
BcaC01g03075 Brassica carinata HOM05D003477 ORTHO05D004043 1.1e-09 66.6 94 47.9
C03p56260 Brassica napus HOM05D003477 ORTHO05D004043 1.1e-09 66.6 94 47.9
BolC3t17914H Brassica oleracea HOM05D003477 ORTHO05D004043 1.1e-09 66.6 94 47.9
FvH4_2g04800 Fragaria vesca HOM05D003477 ORTHO05D004043 1.1e-09 66.6 87 51.7
Cfa004605 Carpinus fangiana HOM05D003477 ORTHO05D004043 1.5e-09 66.2 94 51.1
FAN24G0602 Fragaria x ananassa HOM05D003477 ORTHO05D004043 4.3e-09 64.7 87 50.6
Oeu029533.3 Olea europaea HOM05D003477 ORTHO05D004043 4.3e-09 64.7 89 50.6
Aa31LG8G13000 Aethionema arabicum HOM05D003477 ORTHO05D004043 5.6e-09 64.3 94 45.7
Atru.chr5.2447 Acer truncatum HOM05D003477 ORTHO05D004043 1.3e-08 63.2 93 49.5
AL3G46800 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 1.3e-08 63.2 94 45.7
Sp3g28420 Schrenkiella parvula HOM05D003477 ORTHO05D004043 1.3e-08 63.2 94 45.7
FAN20G0459 Fragaria x ananassa HOM05D003477 ORTHO05D004043 1.6e-08 62.8 87 49.4
Potri.009G093400 Populus trichocarpa HOM05D003477 ORTHO05D004043 2.1e-08 62.4 94 47.9
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 2.1e-08 62.4 86 47.7
AT2G15000 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.8e-08 62.0 94 44.7
AT4G34265 Arabidopsis thaliana HOM05D003477 ORTHO05D004043 2.8e-08 62.0 94 46.8
Cpa.g.sc106.115 Carica papaya HOM05D003477 ORTHO05D004043 3.6e-08 61.6 101 45.5
VMungo1215G1682 Vigna mungo HOM05D002634 ORTHO05D003100 3.6e-08 61.6 79 46.8
BcaB08g34577 Brassica carinata HOM05D003477 ORTHO05D004043 6.2e-08 60.8 95 44.2
Sabra09G0072000 Salix brachista HOM05D003477 ORTHO05D004043 1.8e-07 59.3 93 45.2
C01p04520 Brassica napus HOM05D003477 ORTHO05D004043 3.1e-07 58.5 101 40.6
BolC1t00438H Brassica oleracea HOM05D003477 ORTHO05D004043 4.0e-07 58.2 101 40.6
A01p04150 Brassica napus HOM05D003477 ORTHO05D004043 5.3e-07 57.8 101 40.6
BraA01t00404Z Brassica rapa HOM05D003477 ORTHO05D004043 5.3e-07 57.8 101 40.6
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 5.3e-07 57.8 87 43.7
BcaC06g36034 Brassica carinata HOM05D003477 ORTHO05D004043 6.9e-07 57.4 93 39.8
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.9e-07 57.4 87 43.7
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 6.9e-07 57.4 87 43.7
Sp7g32050 Schrenkiella parvula HOM05D003477 ORTHO05D004043 6.9e-07 57.4 41 63.4
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.2e-06 56.6 90 38.9
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.5e-06 56.2 85 44.7
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 2.0e-06 55.8 96 43.8
HanXRQChr09g0251061 Helianthus annuus HOM05D003477 ORTHO05D004043 2.6e-06 55.5 95 49.5
A07p05410 Brassica napus HOM05D003477 ORTHO05D004043 3.4e-06 55.1 90 40.0
C07p08710 Brassica napus HOM05D003477 ORTHO05D004043 3.4e-06 55.1 90 40.0
BolC7t41282H Brassica oleracea HOM05D003477 ORTHO05D004043 3.4e-06 55.1 90 40.0
BraA07t28337Z Brassica rapa HOM05D003477 ORTHO05D004043 3.4e-06 55.1 90 40.0
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 3.4e-06 55.1 83 44.6
FAN15G0619 Fragaria x ananassa HOM05D006766 ORTHO05D008534 5.8e-06 54.3 84 44.0
AL7G17010 Arabidopsis lyrata HOM05D003477 ORTHO05D004043 7.6e-06 53.9 92 42.4
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 9.9e-06 53.5 90 42.2


User provided reference genes

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